ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 3 - 123 | 1.9e-23 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 237 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 453 |
| AclWI | GGATC | 3 cut(s) | 177, 319, 332 |
| AcsI | RAATTY | 2 cut(s) | 279, 340 |
| AcuI | CTGAAG | 1 cut(s) | 150 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 464 |
| AgsI | TTSAA | 2 cut(s) | 275, 304 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 229 |
| AluBI | AGCT | 1 cut(s) | 362 |
| AluI | AGCT | 1 cut(s) | 362 |
| AlwI | GGATC | 3 cut(s) | 177, 319, 332 |
| ApeKI | GCWGC | 4 cut(s) | 119, 161, 359, 362 |
| ApoI | RAATTY | 2 cut(s) | 279, 340 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 250, 277, 282, 309 |
| AseI | ATTAAT | 1 cut(s) | 156 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 279 |
| AspLEI | GCGC | 1 cut(s) | 367 |
| AsuHPI | GGTGA | 1 cut(s) | 199 |
| AsuII | TTCGAA | 1 cut(s) | 283 |
| BamHI | GGATCC | 1 cut(s) | 324 |
| BauI | CACGAG | 1 cut(s) | 330 |
| BbsI | GAAGAC | 3 cut(s) | 24, 287, 380 |
| BbvI | GCAGC | 4 cut(s) | 131, 148, 349, 371 |
| BccI | CCATC | 6 cut(s) | 118, 149, 184, 373, 424, 437 |
| BfaI | CTAG | 1 cut(s) | 96 |
| BfmI | CTRYAG | 1 cut(s) | 357 |
| BisI | GCNGC | 4 cut(s) | 120, 162, 360, 363 |
| BlsI | GCNGC | 4 cut(s) | 121, 163, 361, 364 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 229 |
| BmiI | GGNNCC | 1 cut(s) | 326 |
| BmrI | ACTGGG | 1 cut(s) | 325 |
| BmsI | GCATC | 1 cut(s) | 193 |
| BmuI | ACTGGG | 1 cut(s) | 325 |
| BpiI | GAAGAC | 3 cut(s) | 24, 287, 380 |
| Bpu14I | TTCGAA | 1 cut(s) | 283 |
| BsaAI | YACGTR | 1 cut(s) | 62 |
| BsaJI | CCNNGG | 1 cut(s) | 372 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 464 |
| Bse1I | ACTGG | 1 cut(s) | 320 |
| BseDI | CCNNGG | 1 cut(s) | 372 |
| BseGI | GGATG | 2 cut(s) | 261, 448 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 464 |
| BseNI | ACTGG | 1 cut(s) | 320 |
| BseRI | GAGGAG | 1 cut(s) | 304 |
| BseXI | GCAGC | 4 cut(s) | 131, 148, 349, 371 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 464 |
| Bsp119I | TTCGAA | 1 cut(s) | 283 |
| Bsp143I | GATC | 4 cut(s) | 25, 98, 169, 324 |
| BspHI | TCATGA | 1 cut(s) | 54 |
| BspLI | GGNNCC | 1 cut(s) | 326 |
| BspMAI | CTGCAG | 1 cut(s) | 361 |
| BspPI | GGATC | 3 cut(s) | 177, 319, 332 |
| BspT104I | TTCGAA | 1 cut(s) | 283 |
| BsrI | ACTGG | 1 cut(s) | 320 |
| BssECI | CCNNGG | 1 cut(s) | 372 |
| BssMI | GATC | 4 cut(s) | 25, 98, 169, 324 |
| BssSI | CACGAG | 1 cut(s) | 330 |
| BssT1I | CCWWGG | 1 cut(s) | 372 |
| Bst2BI | CACGAG | 1 cut(s) | 330 |
| Bst6I | CTCTTC | 1 cut(s) | 426 |
| BstBAI | YACGTR | 1 cut(s) | 62 |
| BstBI | TTCGAA | 1 cut(s) | 283 |
| BstC8I | GCNNGC | 1 cut(s) | 369 |
| BstDEI | CTNAG | 1 cut(s) | 474 |
| BstF5I | GGATG | 2 cut(s) | 261, 448 |
| BstHHI | GCGC | 1 cut(s) | 367 |
| BstKTI | GATC | 4 cut(s) | 28, 101, 172, 327 |
| BstMBI | GATC | 4 cut(s) | 25, 98, 169, 324 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 125, 356, 368 |
| BstSFI | CTRYAG | 1 cut(s) | 357 |
| BstV1I | GCAGC | 4 cut(s) | 131, 148, 349, 371 |
| BstV2I | GAAGAC | 3 cut(s) | 24, 287, 380 |
| BstX2I | RGATCY | 2 cut(s) | 169, 324 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 379 |
| BstYI | RGATCY | 2 cut(s) | 169, 324 |
| BtgZI | GCGATG | 2 cut(s) | 24, 137 |
| BtsCI | GGATG | 2 cut(s) | 261, 448 |
| Cac8I | GCNNGC | 1 cut(s) | 369 |
| CciI | TCATGA | 1 cut(s) | 54 |
| CfoI | GCGC | 1 cut(s) | 367 |
| CviAII | CATG | 3 cut(s) | 18, 55, 453 |
| CviJI | RGCY | 4 cut(s) | 45, 90, 128, 362 |
| CviKI_1 | RGCY | 4 cut(s) | 45, 90, 128, 362 |
| DdeI | CTNAG | 1 cut(s) | 474 |
| DpnI | GATC | 4 cut(s) | 27, 100, 171, 326 |
| DpnII | GATC | 4 cut(s) | 25, 98, 169, 324 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 453 |
| DriI | GACNNNNNGTC | 1 cut(s) | 229 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 453 |
| Eam1104I | CTCTTC | 1 cut(s) | 426 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 229 |
| EarI | CTCTTC | 1 cut(s) | 426 |
| Eco130I | CCWWGG | 1 cut(s) | 372 |
| Eco57I | CTGAAG | 1 cut(s) | 150 |
| EcoRI | GAATTC | 1 cut(s) | 340 |
| EcoT14I | CCWWGG | 1 cut(s) | 372 |
| ErhI | CCWWGG | 1 cut(s) | 372 |
| FaeI | CATG | 3 cut(s) | 21, 58, 456 |
| FaiI | YATR | 8 cut(s) | 19, 48, 56, 237, 395, 397, 454, 464 |
| FatI | CATG | 3 cut(s) | 17, 54, 452 |
| FauNDI | CATATG | 1 cut(s) | 395 |
| Fnu4HI | GCNGC | 4 cut(s) | 120, 162, 360, 363 |
| FokI | GGATG | 2 cut(s) | 268, 455 |
| Fsp4HI | GCNGC | 4 cut(s) | 120, 162, 360, 363 |
| FspBI | CTAG | 1 cut(s) | 96 |
| GlaI | GCGC | 1 cut(s) | 366 |
| GluI | GCNGC | 4 cut(s) | 120, 162, 360, 363 |
| HhaI | GCGC | 1 cut(s) | 367 |
| Hin1II | CATG | 3 cut(s) | 21, 58, 456 |
| Hin6I | GCGC | 1 cut(s) | 365 |
| HinP1I | GCGC | 1 cut(s) | 365 |
| HinfI | GANTC | 3 cut(s) | 51, 197, 292 |
| HphI | GGTGA | 1 cut(s) | 199 |
| Hpy188I | TCNGA | 3 cut(s) | 25, 202, 428 |
| Hpy188III | TCNNGA | 2 cut(s) | 55, 332 |
| HpyAV | CCTTC | 2 cut(s) | 279, 310 |
| HpyCH4IV | ACGT | 1 cut(s) | 61 |
| HpyCH4V | TGCA | 2 cut(s) | 164, 359 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 125, 356, 368 |
| HpyF3I | CTNAG | 1 cut(s) | 474 |
| HpySE526I | ACGT | 1 cut(s) | 61 |
| Hsp92II | CATG | 3 cut(s) | 21, 58, 456 |
| HspAI | GCGC | 1 cut(s) | 365 |
| Kzo9I | GATC | 4 cut(s) | 25, 98, 169, 324 |
| LpnPI | CCDG | 4 cut(s) | 19, 56, 197, 301 |
| Lsp1109I | GCAGC | 4 cut(s) | 131, 148, 349, 371 |
| LweI | GCATC | 1 cut(s) | 193 |
| MaeI | CTAG | 1 cut(s) | 96 |
| MaeII | ACGT | 1 cut(s) | 61 |
| MaeIII | GTNAC | 1 cut(s) | 62 |
| MalI | GATC | 4 cut(s) | 27, 100, 171, 326 |
| MboI | GATC | 4 cut(s) | 25, 98, 169, 324 |
| MboII | GAAGA | 5 cut(s) | 24, 287, 287, 380, 413 |
| MflI | RGATCY | 2 cut(s) | 169, 324 |
| MluCI | AATT | 4 cut(s) | 175, 238, 279, 340 |
| MlyI | GAGTC | 2 cut(s) | 60, 301 |
| MnlI | CCTC | 4 cut(s) | 25, 282, 339, 468 |
| MroXI | GAANNNNTTC | 1 cut(s) | 279 |
| MseI | TTAA | 1 cut(s) | 156 |
| MspA1I | CMGCKG | 1 cut(s) | 362 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 125, 356, 368 |
| NdeI | CATATG | 1 cut(s) | 395 |
| NdeII | GATC | 4 cut(s) | 25, 98, 169, 324 |
| NlaIII | CATG | 3 cut(s) | 21, 58, 456 |
| NlaIV | GGNNCC | 1 cut(s) | 326 |
| NmuCI | GTSAC | 1 cut(s) | 62 |
| NspV | TTCGAA | 1 cut(s) | 283 |
| PagI | TCATGA | 1 cut(s) | 54 |
| PdmI | GAANNNNTTC | 1 cut(s) | 279 |
| PfeI | GAWTC | 1 cut(s) | 197 |
| PkrI | GCNGC | 4 cut(s) | 121, 163, 361, 364 |
| PleI | GAGTC | 2 cut(s) | 59, 300 |
| PpsI | GAGTC | 2 cut(s) | 59, 300 |
| Ppu21I | YACGTR | 1 cut(s) | 62 |
| PshBI | ATTAAT | 1 cut(s) | 156 |
| PsiI | TTATAA | 1 cut(s) | 237 |
| PspN4I | GGNNCC | 1 cut(s) | 326 |
| PstI | CTGCAG | 1 cut(s) | 361 |
| PsuI | RGATCY | 2 cut(s) | 169, 324 |
| PvuII | CAGCTG | 1 cut(s) | 362 |
| SaqAI | TTAA | 1 cut(s) | 156 |
| SatI | GCNGC | 4 cut(s) | 120, 162, 360, 363 |
| Sau3AI | GATC | 4 cut(s) | 25, 98, 169, 324 |
| SchI | GAGTC | 2 cut(s) | 60, 301 |
| SetI | ASST | 4 cut(s) | 64, 116, 216, 364 |
| SfaNI | GCATC | 1 cut(s) | 193 |
| SfcI | CTRYAG | 1 cut(s) | 357 |
| SfuI | TTCGAA | 1 cut(s) | 283 |
| Sse9I | AATT | 4 cut(s) | 175, 238, 279, 340 |
| SspMI | CTAG | 1 cut(s) | 96 |
| StyI | CCWWGG | 1 cut(s) | 372 |
| TaiI | ACGT | 1 cut(s) | 64 |
| TaqI | TCGA | 1 cut(s) | 283 |
| TasI | AATT | 4 cut(s) | 175, 238, 279, 340 |
| TfiI | GAWTC | 1 cut(s) | 197 |
| Tru1I | TTAA | 1 cut(s) | 156 |
| Tru9I | TTAA | 1 cut(s) | 156 |
| TseFI | GTSAC | 1 cut(s) | 62 |
| TseI | GCWGC | 4 cut(s) | 119, 161, 359, 362 |
| Tsp45I | GTSAC | 1 cut(s) | 62 |
| TspDTI | ATGAA | 1 cut(s) | 321 |
| TspGWI | ACGGA | 1 cut(s) | 455 |
| VspI | ATTAAT | 1 cut(s) | 156 |
| XapI | RAATTY | 2 cut(s) | 279, 340 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 379 |
| XmnI | GAANNNNTTC | 1 cut(s) | 279 |
| XspI | CTAG | 1 cut(s) | 96 |