ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 41 - 161 | 2.3e-15 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 570 |
| AccB1I | GGYRCC | 1 cut(s) | 442 |
| AccBSI | CCGCTC | 1 cut(s) | 284 |
| AccII | CGCG | 2 cut(s) | 178, 209 |
| AccIII | TCCGGA | 1 cut(s) | 493 |
| AciI | CCGC | 8 cut(s) | 5, 35, 85, 178, 207, 236, 245, 284 |
| AclI | AACGTT | 1 cut(s) | 257 |
| AfaI | GTAC | 1 cut(s) | 215 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 87 |
| AgsI | TTSAA | 1 cut(s) | 553 |
| AjnI | CCWGG | 1 cut(s) | 324 |
| AluBI | AGCT | 4 cut(s) | 135, 332, 351, 455 |
| AluI | AGCT | 4 cut(s) | 135, 332, 351, 455 |
| Alw21I | GWGCWC | 1 cut(s) | 97 |
| Ama87I | CYCGRG | 1 cut(s) | 393 |
| Aor13HI | TCCGGA | 1 cut(s) | 493 |
| AoxI | GGCC | 5 cut(s) | 78, 144, 249, 375, 524 |
| ApeKI | GCWGC | 4 cut(s) | 32, 203, 239, 242 |
| AseI | ATTAAT | 1 cut(s) | 120 |
| AspLEI | GCGC | 2 cut(s) | 178, 469 |
| AspS9I | GGNCC | 1 cut(s) | 138 |
| AsuHPI | GGTGA | 1 cut(s) | 19 |
| AsuNHI | GCTAGC | 1 cut(s) | 131 |
| AvaI | CYCGRG | 1 cut(s) | 393 |
| AvaII | GGWCC | 1 cut(s) | 138 |
| BaeGI | GKGCMC | 1 cut(s) | 447 |
| BanI | GGYRCC | 1 cut(s) | 442 |
| BanII | GRGCYC | 1 cut(s) | 229 |
| Bbv12I | GWGCWC | 1 cut(s) | 97 |
| BbvI | GCAGC | 4 cut(s) | 44, 215, 226, 229 |
| BccI | CCATC | 3 cut(s) | 190, 538, 554 |
| BceAI | ACGGC | 2 cut(s) | 65, 414 |
| BciT130I | CCWGG | 1 cut(s) | 326 |
| BfaI | CTAG | 2 cut(s) | 132, 348 |
| BisI | GCNGC | 8 cut(s) | 33, 36, 204, 207, 237, 240, 243, 285 |
| BlsI | GCNGC | 8 cut(s) | 34, 37, 205, 208, 238, 241, 244, 286 |
| Bme1390I | CCNGG | 1 cut(s) | 326 |
| Bme18I | GGWCC | 1 cut(s) | 138 |
| BmeT110I | CYCGRG | 1 cut(s) | 393 |
| BmgT120I | GGNCC | 1 cut(s) | 138 |
| BmiI | GGNNCC | 2 cut(s) | 228, 444 |
| BmrFI | CCNGG | 1 cut(s) | 326 |
| BmsI | GCATC | 3 cut(s) | 118, 252, 260 |
| BmtI | GCTAGC | 1 cut(s) | 135 |
| Bpu10I | CCTNAGC | 1 cut(s) | 27 |
| BsaJI | CCNNGG | 2 cut(s) | 141, 324 |
| BsaWI | WCCGGW | 2 cut(s) | 97, 493 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 87 |
| BseAI | TCCGGA | 1 cut(s) | 493 |
| BseBI | CCWGG | 1 cut(s) | 326 |
| BseDI | CCNNGG | 2 cut(s) | 141, 324 |
| BseGI | GGATG | 3 cut(s) | 133, 201, 275 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 87 |
| BseSI | GKGCMC | 1 cut(s) | 447 |
| BseXI | GCAGC | 4 cut(s) | 44, 215, 226, 229 |
| Bsh1236I | CGCG | 2 cut(s) | 178, 209 |
| BshFI | GGCC | 5 cut(s) | 80, 146, 251, 377, 526 |
| BshNI | GGYRCC | 1 cut(s) | 442 |
| BsiHKAI | GWGCWC | 1 cut(s) | 97 |
| BsiHKCI | CYCGRG | 1 cut(s) | 393 |
| BsiSI | CCGG | 3 cut(s) | 98, 165, 494 |
| BslFI | GGGAC | 1 cut(s) | 195 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 87 |
| BsmFI | GGGAC | 1 cut(s) | 195 |
| BsnI | GGCC | 5 cut(s) | 80, 146, 251, 377, 526 |
| BsoBI | CYCGRG | 1 cut(s) | 393 |
| Bsp1286I | GDGCHC | 3 cut(s) | 97, 229, 447 |
| Bsp13I | TCCGGA | 1 cut(s) | 493 |
| BspACI | CCGC | 8 cut(s) | 5, 35, 85, 178, 207, 236, 245, 284 |
| BspANI | GGCC | 5 cut(s) | 80, 146, 251, 377, 526 |
| BspEI | TCCGGA | 1 cut(s) | 493 |
| BspFNI | CGCG | 2 cut(s) | 178, 209 |
| BspLI | GGNNCC | 2 cut(s) | 228, 444 |
| BspOI | GCTAGC | 1 cut(s) | 135 |
| BspT107I | GGYRCC | 1 cut(s) | 442 |
| BsrBI | CCGCTC | 1 cut(s) | 284 |
| BssECI | CCNNGG | 2 cut(s) | 141, 324 |
| BssT1I | CCWWGG | 1 cut(s) | 141 |
| Bst2UI | CCWGG | 1 cut(s) | 326 |
| BstC8I | GCNNGC | 2 cut(s) | 133, 353 |
| BstDEI | CTNAG | 1 cut(s) | 27 |
| BstF5I | GGATG | 3 cut(s) | 133, 201, 275 |
| BstFNI | CGCG | 2 cut(s) | 178, 209 |
| BstHHI | GCGC | 2 cut(s) | 178, 469 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 32, 215, 224, 233, 242, 248 |
| BstNI | CCWGG | 1 cut(s) | 326 |
| BstSCI | CCNGG | 1 cut(s) | 324 |
| BstSLI | GKGCMC | 1 cut(s) | 447 |
| BstUI | CGCG | 2 cut(s) | 178, 209 |
| BstV1I | GCAGC | 4 cut(s) | 44, 215, 226, 229 |
| BsuRI | GGCC | 5 cut(s) | 80, 146, 251, 377, 526 |
| BtsCI | GGATG | 3 cut(s) | 133, 201, 275 |
| Cac8I | GCNNGC | 2 cut(s) | 133, 353 |
| CfoI | GCGC | 2 cut(s) | 178, 469 |
| Cfr13I | GGNCC | 1 cut(s) | 138 |
| CseI | GACGC | 1 cut(s) | 468 |
| Csp6I | GTAC | 1 cut(s) | 214 |
| CviAII | CATG | 4 cut(s) | 266, 385, 438, 470 |
| CviQI | GTAC | 1 cut(s) | 214 |
| DdeI | CTNAG | 1 cut(s) | 27 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 570 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 570 |
| Eco130I | CCWWGG | 1 cut(s) | 141 |
| Eco147I | AGGCCT | 3 cut(s) | 146, 377, 526 |
| Eco24I | GRGCYC | 1 cut(s) | 229 |
| Eco47I | GGWCC | 1 cut(s) | 138 |
| Eco88I | CYCGRG | 1 cut(s) | 393 |
| EcoRII | CCWGG | 1 cut(s) | 324 |
| EcoT14I | CCWWGG | 1 cut(s) | 141 |
| EcoT22I | ATGCAT | 1 cut(s) | 267 |
| EcoT38I | GRGCYC | 1 cut(s) | 229 |
| ErhI | CCWWGG | 1 cut(s) | 141 |
| FaeI | CATG | 4 cut(s) | 269, 388, 441, 473 |
| FaiI | YATR | 7 cut(s) | 267, 303, 335, 386, 439, 471, 514 |
| FaqI | GGGAC | 1 cut(s) | 195 |
| FatI | CATG | 4 cut(s) | 265, 384, 437, 469 |
| FauI | CCCGC | 1 cut(s) | 171 |
| Fnu4HI | GCNGC | 8 cut(s) | 33, 36, 204, 207, 237, 240, 243, 285 |
| FokI | GGATG | 3 cut(s) | 140, 208, 282 |
| FriOI | GRGCYC | 1 cut(s) | 229 |
| Fsp4HI | GCNGC | 8 cut(s) | 33, 36, 204, 207, 237, 240, 243, 285 |
| FspBI | CTAG | 2 cut(s) | 132, 348 |
| GlaI | GCGC | 2 cut(s) | 177, 468 |
| GluI | GCNGC | 8 cut(s) | 33, 36, 204, 207, 237, 240, 243, 285 |
| HaeIII | GGCC | 5 cut(s) | 80, 146, 251, 377, 526 |
| HapII | CCGG | 3 cut(s) | 98, 165, 494 |
| HgaI | GACGC | 1 cut(s) | 468 |
| HhaI | GCGC | 2 cut(s) | 178, 469 |
| Hin1II | CATG | 4 cut(s) | 269, 388, 441, 473 |
| Hin6I | GCGC | 2 cut(s) | 176, 467 |
| HinP1I | GCGC | 2 cut(s) | 176, 467 |
| HinfI | GANTC | 2 cut(s) | 314, 320 |
| HpaII | CCGG | 3 cut(s) | 98, 165, 494 |
| HphI | GGTGA | 1 cut(s) | 19 |
| Hpy188I | TCNGA | 1 cut(s) | 319 |
| Hpy188III | TCNNGA | 2 cut(s) | 422, 494 |
| Hpy99I | CGWCG | 1 cut(s) | 484 |
| HpyAV | CCTTC | 3 cut(s) | 61, 186, 240 |
| HpyCH4IV | ACGT | 1 cut(s) | 257 |
| HpyCH4V | TGCA | 1 cut(s) | 265 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 32, 215, 224, 233, 242, 248 |
| HpyF3I | CTNAG | 1 cut(s) | 27 |
| HpySE526I | ACGT | 1 cut(s) | 257 |
| Hsp92II | CATG | 4 cut(s) | 269, 388, 441, 473 |
| HspAI | GCGC | 2 cut(s) | 176, 467 |
| Kpn2I | TCCGGA | 1 cut(s) | 493 |
| LmnI | GCTCC | 3 cut(s) | 100, 232, 281 |
| Lsp1109I | GCAGC | 4 cut(s) | 44, 215, 226, 229 |
| LweI | GCATC | 3 cut(s) | 118, 252, 260 |
| MaeI | CTAG | 2 cut(s) | 132, 348 |
| MaeII | ACGT | 1 cut(s) | 257 |
| MbiI | CCGCTC | 1 cut(s) | 284 |
| MboII | GAAGA | 2 cut(s) | 127, 525 |
| MhlI | GDGCHC | 3 cut(s) | 97, 229, 447 |
| MluCI | AATT | 3 cut(s) | 152, 275, 457 |
| MlyI | GAGTC | 1 cut(s) | 314 |
| MnlI | CCTC | 7 cut(s) | 57, 157, 204, 241, 367, 405, 537 |
| Mph1103I | ATGCAT | 1 cut(s) | 267 |
| MroI | TCCGGA | 1 cut(s) | 493 |
| MseI | TTAA | 3 cut(s) | 120, 296, 399 |
| MspA1I | CMGCKG | 1 cut(s) | 35 |
| MspI | CCGG | 3 cut(s) | 98, 165, 494 |
| MspR9I | CCNGG | 1 cut(s) | 326 |
| MvaI | CCWGG | 1 cut(s) | 326 |
| MvnI | CGCG | 2 cut(s) | 178, 209 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 32, 215, 224, 233, 242, 248 |
| NheI | GCTAGC | 1 cut(s) | 131 |
| NlaIII | CATG | 4 cut(s) | 269, 388, 441, 473 |
| NlaIV | GGNNCC | 2 cut(s) | 228, 444 |
| NsiI | ATGCAT | 1 cut(s) | 267 |
| PceI | AGGCCT | 3 cut(s) | 146, 377, 526 |
| PfeI | GAWTC | 1 cut(s) | 314 |
| PkrI | GCNGC | 8 cut(s) | 34, 37, 205, 208, 238, 241, 244, 286 |
| PleI | GAGTC | 1 cut(s) | 314 |
| PpsI | GAGTC | 1 cut(s) | 314 |
| PshBI | ATTAAT | 1 cut(s) | 120 |
| Psp1406I | AACGTT | 1 cut(s) | 257 |
| Psp6I | CCWGG | 1 cut(s) | 324 |
| PspGI | CCWGG | 1 cut(s) | 324 |
| PspN4I | GGNNCC | 2 cut(s) | 228, 444 |
| PspPI | GGNCC | 1 cut(s) | 138 |
| RsaI | GTAC | 1 cut(s) | 215 |
| RsaNI | GTAC | 1 cut(s) | 214 |
| SaqAI | TTAA | 3 cut(s) | 120, 296, 399 |
| SatI | GCNGC | 8 cut(s) | 33, 36, 204, 207, 237, 240, 243, 285 |
| Sau96I | GGNCC | 1 cut(s) | 138 |
| SchI | GAGTC | 1 cut(s) | 314 |
| ScrFI | CCNGG | 1 cut(s) | 326 |
| SduI | GDGCHC | 3 cut(s) | 97, 229, 447 |
| SetI | ASST | 7 cut(s) | 137, 215, 260, 302, 334, 353, 457 |
| SfaNI | GCATC | 3 cut(s) | 118, 252, 260 |
| SinI | GGWCC | 1 cut(s) | 138 |
| Sse9I | AATT | 3 cut(s) | 152, 275, 457 |
| SseBI | AGGCCT | 3 cut(s) | 146, 377, 526 |
| SsiI | CCGC | 8 cut(s) | 5, 35, 85, 178, 207, 236, 245, 284 |
| SspMI | CTAG | 2 cut(s) | 132, 348 |
| StuI | AGGCCT | 3 cut(s) | 146, 377, 526 |
| StyD4I | CCNGG | 1 cut(s) | 324 |
| StyI | CCWWGG | 1 cut(s) | 141 |
| TaiI | ACGT | 1 cut(s) | 260 |
| TaqI | TCGA | 1 cut(s) | 519 |
| TasI | AATT | 3 cut(s) | 152, 275, 457 |
| TauI | GCSGC | 4 cut(s) | 38, 209, 239, 287 |
| TfiI | GAWTC | 1 cut(s) | 314 |
| Tru1I | TTAA | 3 cut(s) | 120, 296, 399 |
| Tru9I | TTAA | 3 cut(s) | 120, 296, 399 |
| TseI | GCWGC | 4 cut(s) | 32, 203, 239, 242 |
| VpaK11BI | GGWCC | 1 cut(s) | 138 |
| VspI | ATTAAT | 1 cut(s) | 120 |
| XspI | CTAG | 2 cut(s) | 132, 348 |
| Zsp2I | ATGCAT | 1 cut(s) | 267 |