ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 18 - 135 | 1.3e-16 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 331 |
| AciI | CCGC | 5 cut(s) | 134, 176, 395, 398, 435 |
| AcsI | RAATTY | 1 cut(s) | 217 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 331 |
| AgsI | TTSAA | 3 cut(s) | 245, 353, 484 |
| AluBI | AGCT | 2 cut(s) | 35, 188 |
| AluI | AGCT | 2 cut(s) | 35, 188 |
| Alw21I | GWGCWC | 1 cut(s) | 460 |
| Alw26I | GTCTC | 2 cut(s) | 27, 69 |
| Ama87I | CYCGRG | 1 cut(s) | 121 |
| ApoI | RAATTY | 1 cut(s) | 217 |
| AspS9I | GGNCC | 1 cut(s) | 304 |
| AsuHPI | GGTGA | 3 cut(s) | 148, 223, 414 |
| AvaI | CYCGRG | 1 cut(s) | 121 |
| AvaII | GGWCC | 1 cut(s) | 304 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 189, 221 |
| BauI | CACGAG | 1 cut(s) | 409 |
| BbsI | GAAGAC | 2 cut(s) | 488, 497 |
| Bbv12I | GWGCWC | 1 cut(s) | 460 |
| BccI | CCATC | 1 cut(s) | 166 |
| BcoDI | GTCTC | 2 cut(s) | 27, 69 |
| BfaI | CTAG | 1 cut(s) | 185 |
| BfmI | CTRYAG | 1 cut(s) | 227 |
| BisI | GCNGC | 2 cut(s) | 396, 436 |
| BlsI | GCNGC | 2 cut(s) | 397, 437 |
| Bme18I | GGWCC | 1 cut(s) | 304 |
| BmeT110I | CYCGRG | 1 cut(s) | 121 |
| BmgT120I | GGNCC | 1 cut(s) | 304 |
| BmiI | GGNNCC | 1 cut(s) | 305 |
| BmrI | ACTGGG | 1 cut(s) | 49 |
| BmsI | GCATC | 4 cut(s) | 13, 49, 191, 241 |
| BmuI | ACTGGG | 1 cut(s) | 49 |
| BpiI | GAAGAC | 2 cut(s) | 488, 497 |
| Bpu10I | CCTNAGC | 1 cut(s) | 320 |
| BsaI | GGTCTC | 1 cut(s) | 27 |
| BsaWI | WCCGGW | 1 cut(s) | 424 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 331 |
| Bse1I | ACTGG | 2 cut(s) | 44, 213 |
| BseGI | GGATG | 1 cut(s) | 206 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 331 |
| BseMII | CTCAG | 1 cut(s) | 281 |
| BseNI | ACTGG | 2 cut(s) | 44, 213 |
| BseRI | GAGGAG | 2 cut(s) | 15, 358 |
| BseYI | CCCAGC | 2 cut(s) | 31, 444 |
| BsiHKAI | GWGCWC | 1 cut(s) | 460 |
| BsiHKCI | CYCGRG | 1 cut(s) | 121 |
| BsiSI | CCGG | 1 cut(s) | 425 |
| BslFI | GGGAC | 2 cut(s) | 256, 317 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 331 |
| BsmAI | GTCTC | 2 cut(s) | 27, 69 |
| BsmFI | GGGAC | 2 cut(s) | 256, 317 |
| Bso31I | GGTCTC | 1 cut(s) | 27 |
| BsoBI | CYCGRG | 1 cut(s) | 121 |
| Bsp1286I | GDGCHC | 1 cut(s) | 460 |
| Bsp143I | GATC | 1 cut(s) | 380 |
| BspACI | CCGC | 5 cut(s) | 134, 176, 395, 398, 435 |
| BspCNI | CTCAG | 1 cut(s) | 282 |
| BspLI | GGNNCC | 1 cut(s) | 305 |
| BspMAI | CTGCAG | 1 cut(s) | 231 |
| BspTNI | GGTCTC | 1 cut(s) | 27 |
| BsrI | ACTGG | 2 cut(s) | 44, 213 |
| BssMI | GATC | 1 cut(s) | 380 |
| BssSI | CACGAG | 1 cut(s) | 409 |
| Bst2BI | CACGAG | 1 cut(s) | 409 |
| Bst6I | CTCTTC | 1 cut(s) | 65 |
| BstDEI | CTNAG | 2 cut(s) | 290, 320 |
| BstF5I | GGATG | 1 cut(s) | 206 |
| BstKTI | GATC | 1 cut(s) | 383 |
| BstMAI | GTCTC | 2 cut(s) | 27, 69 |
| BstMBI | GATC | 1 cut(s) | 380 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 441 |
| BstNSI | RCATGY | 1 cut(s) | 158 |
| BstSFI | CTRYAG | 1 cut(s) | 227 |
| BstV2I | GAAGAC | 2 cut(s) | 488, 497 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 39 |
| BtgZI | GCGATG | 1 cut(s) | 185 |
| BtsCI | GGATG | 1 cut(s) | 206 |
| Cfr13I | GGNCC | 1 cut(s) | 304 |
| CviAII | CATG | 4 cut(s) | 155, 326, 357, 501 |
| CviJI | RGCY | 6 cut(s) | 35, 182, 188, 324, 438, 444 |
| CviKI_1 | RGCY | 6 cut(s) | 35, 182, 188, 324, 438, 444 |
| DdeI | CTNAG | 2 cut(s) | 290, 320 |
| DpnI | GATC | 1 cut(s) | 382 |
| DpnII | GATC | 1 cut(s) | 380 |
| Eam1104I | CTCTTC | 1 cut(s) | 65 |
| EarI | CTCTTC | 1 cut(s) | 65 |
| EciI | GGCGGA | 2 cut(s) | 191, 413 |
| Eco31I | GGTCTC | 1 cut(s) | 27 |
| Eco47I | GGWCC | 1 cut(s) | 304 |
| Eco88I | CYCGRG | 1 cut(s) | 121 |
| EcoO109I | RGGNCCY | 1 cut(s) | 304 |
| EcoT22I | ATGCAT | 1 cut(s) | 6 |
| FaeI | CATG | 4 cut(s) | 158, 329, 360, 504 |
| FaiI | YATR | 8 cut(s) | 156, 266, 327, 358, 392, 419, 463, 502 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 480, 512 |
| FaqI | GGGAC | 2 cut(s) | 256, 317 |
| FatI | CATG | 4 cut(s) | 154, 325, 356, 500 |
| Fnu4HI | GCNGC | 2 cut(s) | 396, 436 |
| FokI | GGATG | 1 cut(s) | 213 |
| Fsp4HI | GCNGC | 2 cut(s) | 396, 436 |
| FspBI | CTAG | 1 cut(s) | 185 |
| GluI | GCNGC | 2 cut(s) | 396, 436 |
| GsaI | CCCAGC | 2 cut(s) | 35, 448 |
| HapII | CCGG | 1 cut(s) | 425 |
| Hin1II | CATG | 4 cut(s) | 158, 329, 360, 504 |
| HinfI | GANTC | 3 cut(s) | 77, 245, 373 |
| HpaII | CCGG | 1 cut(s) | 425 |
| HphI | GGTGA | 3 cut(s) | 148, 223, 414 |
| Hpy166II | GTNNAC | 1 cut(s) | 162 |
| Hpy188I | TCNGA | 1 cut(s) | 250 |
| Hpy188III | TCNNGA | 3 cut(s) | 194, 289, 409 |
| Hpy8I | GTNNAC | 1 cut(s) | 162 |
| HpyAV | CCTTC | 2 cut(s) | 21, 191 |
| HpyCH4V | TGCA | 5 cut(s) | 4, 154, 229, 254, 268 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 441 |
| HpyF3I | CTNAG | 2 cut(s) | 290, 320 |
| Hsp92II | CATG | 4 cut(s) | 158, 329, 360, 504 |
| Kzo9I | GATC | 1 cut(s) | 380 |
| LpnPI | CCDG | 9 cut(s) | 25, 45, 121, 179, 194, 215, 302, 430, 438 |
| LweI | GCATC | 4 cut(s) | 13, 49, 191, 241 |
| MaeI | CTAG | 1 cut(s) | 185 |
| MaeIII | GTNAC | 1 cut(s) | 89 |
| MalI | GATC | 1 cut(s) | 382 |
| MboI | GATC | 1 cut(s) | 380 |
| MboII | GAAGA | 3 cut(s) | 82, 488, 497 |
| MhlI | GDGCHC | 1 cut(s) | 460 |
| MluCI | AATT | 2 cut(s) | 217, 277 |
| MlyI | GAGTC | 1 cut(s) | 71 |
| MmeI | TCCRAC | 1 cut(s) | 47 |
| MnlI | CCTC | 7 cut(s) | 36, 141, 172, 226, 328, 336, 405 |
| Mph1103I | ATGCAT | 1 cut(s) | 6 |
| MseI | TTAA | 3 cut(s) | 45, 50, 276 |
| MspI | CCGG | 1 cut(s) | 425 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 441 |
| NdeII | GATC | 1 cut(s) | 380 |
| NlaIII | CATG | 4 cut(s) | 158, 329, 360, 504 |
| NlaIV | GGNNCC | 1 cut(s) | 305 |
| NmuCI | GTSAC | 1 cut(s) | 89 |
| NsiI | ATGCAT | 1 cut(s) | 6 |
| NspI | RCATGY | 1 cut(s) | 158 |
| PfeI | GAWTC | 2 cut(s) | 245, 373 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 331 |
| PkrI | GCNGC | 2 cut(s) | 397, 437 |
| PleI | GAGTC | 1 cut(s) | 71 |
| PpsI | GAGTC | 1 cut(s) | 71 |
| PpuMI | RGGWCCY | 1 cut(s) | 304 |
| Psp5II | RGGWCCY | 1 cut(s) | 304 |
| PspFI | CCCAGC | 2 cut(s) | 31, 444 |
| PspN4I | GGNNCC | 1 cut(s) | 305 |
| PspPI | GGNCC | 1 cut(s) | 304 |
| PspPPI | RGGWCCY | 1 cut(s) | 304 |
| PstI | CTGCAG | 1 cut(s) | 231 |
| SaqAI | TTAA | 3 cut(s) | 45, 50, 276 |
| SatI | GCNGC | 2 cut(s) | 396, 436 |
| Sau3AI | GATC | 1 cut(s) | 380 |
| Sau96I | GGNCC | 1 cut(s) | 304 |
| SchI | GAGTC | 1 cut(s) | 71 |
| SduI | GDGCHC | 1 cut(s) | 460 |
| SetI | ASST | 6 cut(s) | 13, 37, 190, 237, 309, 339 |
| SfaNI | GCATC | 4 cut(s) | 13, 49, 191, 241 |
| SfcI | CTRYAG | 1 cut(s) | 227 |
| SinI | GGWCC | 1 cut(s) | 304 |
| Sse9I | AATT | 2 cut(s) | 217, 277 |
| SsiI | CCGC | 5 cut(s) | 134, 176, 395, 398, 435 |
| SspMI | CTAG | 1 cut(s) | 185 |
| TaqI | TCGA | 1 cut(s) | 7 |
| TaqII | GACCGA | 1 cut(s) | 482 |
| TasI | AATT | 2 cut(s) | 217, 277 |
| TauI | GCSGC | 2 cut(s) | 398, 438 |
| TfiI | GAWTC | 2 cut(s) | 245, 373 |
| Tru1I | TTAA | 3 cut(s) | 45, 50, 276 |
| Tru9I | TTAA | 3 cut(s) | 45, 50, 276 |
| TseFI | GTSAC | 1 cut(s) | 89 |
| Tsp45I | GTSAC | 1 cut(s) | 89 |
| TspDTI | ATGAA | 1 cut(s) | 394 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 331 |
| VpaK11BI | GGWCC | 1 cut(s) | 304 |
| XapI | RAATTY | 1 cut(s) | 217 |
| XceI | RCATGY | 1 cut(s) | 158 |
| XspI | CTAG | 1 cut(s) | 185 |
| Zsp2I | ATGCAT | 1 cut(s) | 6 |