Rw6G007220

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0000093
Physical Location & Seq
Forward (+)
11889021 .. 11889443
423 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G007220.1

Sequence Viewer

Length: 423 bp
ATGATCCGAAATCATCAGTGTGCTGTGATGGGTGGCTCTGCTAGATCGGTCTGCTGCAGCTCCGTCCCTATTGCAGAGGCAATGGCTGTGTTGGACGGCATCAATTCTGCTTTGGAGCACAATTTCACAAAGGTTATTGTGGAATCGGACTCACTAGGAGTGATCACAGACATCAAATCAAAGAAAAAGAGTAGAGTTTGGGAGACTTACCCTTTAATTGAAGAGATTAGAAGAAGAAGCCTCCAGTTCTCTGAAATATGCTGGGATTGGATCCCCCGAGAAGCGAATTCAGTCGCTCACACTACGGCTTCGCTTGCCAAAGGGATGGTGGGTCTAAACAGATGGGCAAACACACCACCACCATCCTTACTTCGAGTACTGAAGACTGATGGCCTTCCATGCCCTCCGCTAGATAGCAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 zf-RVT

Protein Analysis

140

Amino Acids

15.4

Weight (kDa)

8.33

Isoelectric Point (pI)

54.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 2 - 105 9.8e-20 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000093)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G09490
fragaria_vesca FvH4_1g23791 FvH4_2g01641 FvH4_2g04612 FvH4_2g06831 FvH4_2g07841 FvH4_2g13581 FvH4_2g27220 FvH4_2g30621 FvH4_2g34753 FvH4_3g10392 FvH4_3g24291 FvH4_3g25030 FvH4_3g29361 FvH4_3g31372 FvH4_3g32402 FvH4_3g43651 FvH4_4g03830 FvH4_4g05481 FvH4_4g20431 FvH4_4g21421 FvH4_4g25931 FvH4_5g08801 FvH4_5g21021 FvH4_5g26254 FvH4_5g30931 FvH4_5g31281 FvH4_5g33581 FvH4_5g35622 FvH4_6g02100 FvH4_6g07963 FvH4_6g11620 FvH4_6g16031 FvH4_6g19041 FvH4_6g24211 FvH4_6g24271 FvH4_6g30670 FvH4_6g49540 FvH4_7g25914
malus_domestica MD03G1245200.v1.1 MD04G1168000.v1.1 MD09G1242600.v1.1 MD15G1334000.v1.1 MD17G1165700.v1.1
prunus_persica Prupe.1G073500_v2.0.a1 Prupe.1G283700_v2.0.a1 Prupe.1G524100_v2.0.a1 Prupe.2G022700_v2.0.a1 Prupe.2G022800_v2.0.a1 Prupe.2G022800_v2.0.a1 Prupe.2G044300_v2.0.a1 Prupe.2G048800_v2.0.a1 Prupe.2G092000_v2.0.a1 Prupe.2G216500_v2.0.a1 Prupe.2G216600_v2.0.a1 Prupe.2G216600_v2.0.a1 Prupe.3G103400_v2.0.a1 Prupe.3G143300_v2.0.a1 Prupe.3G190000_v2.0.a1 Prupe.3G219800_v2.0.a1 Prupe.4G177800_v2.0.a1 Prupe.4G261300_v2.0.a1 Prupe.5G044600_v2.0.a1 Prupe.5G067400_v2.0.a1 Prupe.7G083900_v2.0.a1 Prupe.7G120900_v2.0.a1 Prupe.8G032200_v2.0.a1 Prupe.8G036100_v2.0.a1 Prupe.8G042700_v2.0.a1
pyrus_communis pycom01g21710 pycom02g19770 pycom03g05120 pycom05g01370 pycom05g08780 pycom05g10120 pycom07g01370 pycom07g05930 pycom08g15760 pycom08g18090 pycom08g21060 pycom09g03880 pycom10g03870 pycom13g22240 pycom16g05120 pycom16g17170 pycom17g12180 pycom17g16290 pycom17g21230 pycom17g24990 pycom215g00100
rosa_chinensis RchiOBHm_Chr1g0323031 RchiOBHm_Chr1g0324391 RchiOBHm_Chr1g0326401 RchiOBHm_Chr1g0327811 RchiOBHm_Chr1g0332521 RchiOBHm_Chr1g0336501 RchiOBHm_Chr1g0346021 RchiOBHm_Chr1g0347191 RchiOBHm_Chr1g0367181 RchiOBHm_Chr2g0089441 RchiOBHm_Chr2g0115441 RchiOBHm_Chr3g0490691 RchiOBHm_Chr4g0395251 RchiOBHm_Chr4g0398081 RchiOBHm_Chr4g0409451 RchiOBHm_Chr4g0413041 RchiOBHm_Chr4g0415471 RchiOBHm_Chr4g0420961 RchiOBHm_Chr5g0040301 RchiOBHm_Chr5g0070651 RchiOBHm_Chr6g0263011 RchiOBHm_Chr6g0270721 RchiOBHm_Chr6g0277111 RchiOBHm_Chr7g0179771 RchiOBHm_Chr7g0223051 RchiOBHm_Chr7g0225031 RchiOBHm_Chr7g0225091
rosa_laevigata RLG00000001668 RLG00000001672 RLG00000001676 RLG00000007762 RLG00000008994 RLG00000011117 RLG00000013729 RLG00000013839 RLG00000014759 RLG00000016638 RLG00000018535 RLG00000018614 RLG00000018646 RLG00000020679 RLG00000023337 RLG00000029348 RLG00000035891 RLG00000035912
rosa_multiflora Rmu_co8152500.1_g000001 Rmu_co8203314.1_g000001 Rmu_co8383183.1_g000001 Rmu_sc0000293.1_g000033 Rmu_sc0000367.1_g000226 Rmu_sc0000512.1_g000023 Rmu_sc0000594.1_g000059 Rmu_sc0000654.1_g000022 Rmu_sc0000654.1_g000047 Rmu_sc0000706.1_g000037 Rmu_sc0001348.1_g000008 Rmu_sc0001385.1_g000024 Rmu_sc0001405.1_g000002 Rmu_sc0001521.1_g000048 Rmu_sc0001932.1_g000008 Rmu_sc0001932.1_g000009 Rmu_sc0002535.1_g000011 Rmu_sc0002908.1_g000019 Rmu_sc0003709.1_g000004 Rmu_sc0003882.1_g000054 Rmu_sc0004035.1_g000007 Rmu_sc0004041.1_g000007 Rmu_sc0004288.1_g000011 Rmu_sc0004569.1_g000004 Rmu_sc0004677.1_g000016 Rmu_sc0004834.1_g000010 Rmu_sc0005193.1_g000008 Rmu_sc0005354.1_g000009 Rmu_sc0006514.1_g000021 Rmu_sc0006691.1_g000001 Rmu_sc0006888.1_g000021 Rmu_sc0006889.1_g000013 Rmu_sc0008096.1_g000017 Rmu_sc0008378.1_g000003 Rmu_sc0009127.1_g000005 Rmu_sc0009191.1_g000016 Rmu_sc0009687.1_g000018 Rmu_sc0009709.1_g000005 Rmu_sc0009880.1_g000015 Rmu_sc0011710.1_g000001 Rmu_sc0012615.1_g000004 Rmu_sc0016091.1_g000002 Rmu_sc0022339.1_g000006 Rmu_sc0026537.1_g000002 Rmu_sc0027689.1_g000002 Rmu_sc0036222.1_g000001 Rmu_sc0040890.1_g000001 Rmu_ssc0000148.1_g000006 Rmu_ssc0000151.1_g000017 Rmu_ssc0000404.1_g000018 Rmu_ssc0000449.1_g000009
rosa_roxburghii Rroxscaffold_1G00017760 Rroxscaffold_1G00059150 Rroxscaffold_2G00142560 Rroxscaffold_3G00220440 Rroxscaffold_3G00231700 Rroxscaffold_3G00232400 Rroxscaffold_3G00274510 Rroxscaffold_4G00288790 Rroxscaffold_4G00305680 Rroxscaffold_4G00314880 Rroxscaffold_4G00314900 Rroxscaffold_5G00334590 Rroxscaffold_6G00394110 Rroxscaffold_6G00415860 Rroxscaffold_7G00168240 Rroxscaffold_7G00204400 Rroxscaffold_7G00207840
rosa_rugosa Rorug01G0034900 Rorug02G0079500 Rorug02G0229000 Rorug02G0229100 Rorug02G0291400 Rorug02G0298800 Rorug03G0046400 Rorug03G0064700 Rorug03G0077300 Rorug03G0199000 Rorug03G0200400 Rorug04G0205200 Rorug05G0025400 Rorug05G0127400 Rorug05G0192100 Rorug05G0453400 Rorug05G0538300 Rorug06G0035200 Rorug06G0241000 Rorug06G0268300 Rorug07G0120300 Rorug07G0145000 Rorug07G0209100 Rorug07G0240500 Rorug07G0271700
rosa_samantha Rh1AG179100 Rh1BG106900 Rh1BG163400 Rh1BG163500 Rh1BG323500 Rh2CG447900 Rh2DG503700 Rh3AG293600 Rh3CG229100 Rh3DG221500 Rh4AG106000 Rh4BG267700 Rh4CG062500 Rh4CG090100 Rh4CG114800 Rh5AG038400 Rh5BG395400 Rh5CG441700 Rh5CG572000 Rh6AG222400 Rh6AG264500 Rh6BG137400 Rh6BG225700 Rh6CG144300 Rh6DG087600 Rh6DG096000 Rh6DG362400 Rh6DG390200 Rh7AG207500 Rh7AG324700 Rh7AG388800 Rh7AG437100 Rh7BG019000 Rh7BG374600 Rh7CG028700 Rh7CG341500 Rh7CG408000 Rh7CG408300 Rh7DG354600
rosa_wichuraiana Rw0G009630 Rw0G012170 Rw4G022700 Rw5G028420 Rw5G029490 Rw6G007220 Rw6G007410 Rw6G017880 Rw7G012440 Rw7G021830 Rw7G027490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 407
AclWI GGATC 2 cut(s) 265, 278
AcsI RAATTY 1 cut(s) 286
AcuI CTGAAG 1 cut(s) 401
AfaI GTAC 1 cut(s) 378
AgsI TTSAA 1 cut(s) 221
AluBI AGCT 1 cut(s) 60
AluI AGCT 1 cut(s) 60
Alw21I GWGCWC 1 cut(s) 120
Alw26I GTCTC 1 cut(s) 197
AlwI GGATC 2 cut(s) 265, 278
Ama87I CYCGRG 1 cut(s) 276
AoxI GGCC 1 cut(s) 391
ApeKI GCWGC 2 cut(s) 54, 57
ApoI RAATTY 1 cut(s) 286
AvaI CYCGRG 1 cut(s) 276
BamHI GGATCC 1 cut(s) 270
BbsI GAAGAC 1 cut(s) 389
Bbv12I GWGCWC 1 cut(s) 120
BbvI GCAGC 2 cut(s) 41, 69
BccI CCATC 5 cut(s) 22, 319, 336, 370, 383
BceAI ACGGC 2 cut(s) 112, 321
BclI TGATCA 1 cut(s) 162
BcoDI GTCTC 1 cut(s) 197
BfaI CTAG 3 cut(s) 42, 155, 410
BfmI CTRYAG 1 cut(s) 55
BisI GCNGC 2 cut(s) 55, 58
BlsI GCNGC 2 cut(s) 56, 59
BmcAI AGTACT 1 cut(s) 378
BmeT110I CYCGRG 1 cut(s) 276
BmiI GGNNCC 1 cut(s) 272
BmsI GCATC 1 cut(s) 108
BpiI GAAGAC 1 cut(s) 389
BpmI CTGGAG 1 cut(s) 227
Bse1I ACTGG 1 cut(s) 244
Bse3DI GCAATG 1 cut(s) 87
BseGI GGATG 2 cut(s) 330, 362
BseMI GCAATG 1 cut(s) 87
BseNI ACTGG 1 cut(s) 244
BseXI GCAGC 2 cut(s) 41, 69
BseYI CCCAGC 1 cut(s) 261
BshFI GGCC 1 cut(s) 393
BsiHKAI GWGCWC 1 cut(s) 120
BsiHKCI CYCGRG 1 cut(s) 276
BslFI GGGAC 1 cut(s) 50
BsmAI GTCTC 1 cut(s) 197
BsmFI GGGAC 1 cut(s) 50
BsnI GGCC 1 cut(s) 393
BsoBI CYCGRG 1 cut(s) 276
Bsp1286I GDGCHC 1 cut(s) 120
Bsp143I GATC 4 cut(s) 3, 44, 162, 270
BspACI CCGC 1 cut(s) 407
BspANI GGCC 1 cut(s) 393
BspLI GGNNCC 1 cut(s) 272
BspMAI CTGCAG 1 cut(s) 59
BspPI GGATC 2 cut(s) 265, 278
BsrDI GCAATG 1 cut(s) 87
BsrI ACTGG 1 cut(s) 244
BssMI GATC 4 cut(s) 3, 44, 162, 270
Bst6I CTCTTC 1 cut(s) 216
BstC8I GCNNGC 1 cut(s) 315
BstF5I GGATG 2 cut(s) 330, 362
BstKTI GATC 4 cut(s) 6, 47, 165, 273
BstMAI GTCTC 1 cut(s) 197
BstMBI GATC 4 cut(s) 3, 44, 162, 270
BstMWI GCNNNNNNNGC 2 cut(s) 314, 399
BstSFI CTRYAG 1 cut(s) 55
BstV1I GCAGC 2 cut(s) 41, 69
BstV2I GAAGAC 1 cut(s) 389
BstX2I RGATCY 1 cut(s) 270
BstXI CCANNNNNNTGG 1 cut(s) 325
BstYI RGATCY 1 cut(s) 270
BsuRI GGCC 1 cut(s) 393
BtsCI GGATG 2 cut(s) 330, 362
BtsIMutI CAGTG 1 cut(s) 23
Cac8I GCNNGC 1 cut(s) 315
Csp6I GTAC 1 cut(s) 377
CviAII CATG 1 cut(s) 399
CviJI RGCY 6 cut(s) 36, 60, 86, 240, 308, 393
CviKI_1 RGCY 6 cut(s) 36, 60, 86, 240, 308, 393
CviQI GTAC 1 cut(s) 377
DpnI GATC 4 cut(s) 5, 46, 164, 272
DpnII GATC 4 cut(s) 3, 44, 162, 270
Eam1104I CTCTTC 1 cut(s) 216
EarI CTCTTC 1 cut(s) 216
Eco57I CTGAAG 1 cut(s) 401
Eco88I CYCGRG 1 cut(s) 276
EcoRI GAATTC 1 cut(s) 286
FaeI CATG 1 cut(s) 402
FaiI YATR 2 cut(s) 259, 400
FaqI GGGAC 1 cut(s) 50
FatI CATG 1 cut(s) 398
FbaI TGATCA 1 cut(s) 162
Fnu4HI GCNGC 2 cut(s) 55, 58
FokI GGATG 2 cut(s) 337, 349
Fsp4HI GCNGC 2 cut(s) 55, 58
FspBI CTAG 3 cut(s) 42, 155, 410
GluI GCNGC 2 cut(s) 55, 58
GsaI CCCAGC 1 cut(s) 265
GsuI CTGGAG 1 cut(s) 227
HaeIII GGCC 1 cut(s) 393
Hin1II CATG 1 cut(s) 402
HinfI GANTC 2 cut(s) 143, 149
Hpy188I TCNGA 3 cut(s) 8, 148, 253
HpyAV CCTTC 1 cut(s) 404
HpyCH4V TGCA 2 cut(s) 57, 74
HpyF10VI GCNNNNNNNGC 2 cut(s) 314, 399
Hsp92II CATG 1 cut(s) 402
Ksp22I TGATCA 1 cut(s) 162
Kzo9I GATC 4 cut(s) 3, 44, 162, 270
LmnI GCTCC 2 cut(s) 65, 115
LpnPI CCDG 2 cut(s) 247, 257
Lsp1109I GCAGC 2 cut(s) 41, 69
LweI GCATC 1 cut(s) 108
MaeI CTAG 3 cut(s) 42, 155, 410
MalI GATC 4 cut(s) 5, 46, 164, 272
MboI GATC 4 cut(s) 3, 44, 162, 270
MboII GAAGA 4 cut(s) 233, 243, 246, 394
MflI RGATCY 1 cut(s) 270
MhlI GDGCHC 1 cut(s) 120
MluCI AATT 5 cut(s) 103, 121, 216, 286, 418
MlyI GAGTC 1 cut(s) 143
MmeI TCCRAC 1 cut(s) 72
MnlI CCTC 3 cut(s) 70, 251, 414
MseI TTAA 2 cut(s) 215, 421
MslI CAYNNNNRTG 1 cut(s) 18
MwoI GCNNNNNNNGC 2 cut(s) 314, 399
NdeII GATC 4 cut(s) 3, 44, 162, 270
NlaIII CATG 1 cut(s) 402
NlaIV GGNNCC 1 cut(s) 272
PfeI GAWTC 1 cut(s) 143
PkrI GCNGC 2 cut(s) 56, 59
PleI GAGTC 1 cut(s) 143
PpsI GAGTC 1 cut(s) 143
PspFI CCCAGC 1 cut(s) 261
PspN4I GGNNCC 1 cut(s) 272
PstI CTGCAG 1 cut(s) 59
PsuI RGATCY 1 cut(s) 270
RsaI GTAC 1 cut(s) 378
RsaNI GTAC 1 cut(s) 377
RseI CAYNNNNRTG 1 cut(s) 18
SaqAI TTAA 2 cut(s) 215, 421
SatI GCNGC 2 cut(s) 55, 58
Sau3AI GATC 4 cut(s) 3, 44, 162, 270
ScaI AGTACT 1 cut(s) 378
SchI GAGTC 1 cut(s) 143
SduI GDGCHC 1 cut(s) 120
SetI ASST 2 cut(s) 62, 135
SfaNI GCATC 1 cut(s) 108
SfcI CTRYAG 1 cut(s) 55
SgeI CNNG 9 cut(s) 54, 167, 256, 274, 288, 290, 326, 386, 411
SmiMI CAYNNNNRTG 1 cut(s) 18
Sse9I AATT 5 cut(s) 103, 121, 216, 286, 418
SsiI CCGC 1 cut(s) 407
SspMI CTAG 3 cut(s) 42, 155, 410
TaqI TCGA 1 cut(s) 373
TaqII GACCGA 1 cut(s) 37
TasI AATT 5 cut(s) 103, 121, 216, 286, 418
TatI WGTACW 1 cut(s) 376
TfiI GAWTC 1 cut(s) 143
Tru1I TTAA 2 cut(s) 215, 421
Tru9I TTAA 2 cut(s) 215, 421
TscAI CASTG 1 cut(s) 23
TseI GCWGC 2 cut(s) 54, 57
TspGWI ACGGA 1 cut(s) 52
TspRI CASTG 1 cut(s) 23
XapI RAATTY 1 cut(s) 286
XcmI CCANNNNNNNNNTGG 1 cut(s) 325
XspI CTAG 3 cut(s) 42, 155, 410
ZrmI AGTACT 1 cut(s) 378
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.