Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 80 - 152 | 1.6e-10 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 443 |
| AccI | GTMKAC | 1 cut(s) | 483 |
| AciI | CCGC | 2 cut(s) | 216, 544 |
| AclWI | GGATC | 3 cut(s) | 251, 264, 331 |
| AcsI | RAATTY | 1 cut(s) | 128 |
| AcuI | CTGAAG | 2 cut(s) | 96, 384 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 147, 182, 221 |
| AgsI | TTSAA | 2 cut(s) | 70, 123 |
| AjnI | CCWGG | 1 cut(s) | 220 |
| AluBI | AGCT | 4 cut(s) | 80, 353, 362, 427 |
| AluI | AGCT | 4 cut(s) | 80, 353, 362, 427 |
| AlwI | GGATC | 3 cut(s) | 251, 264, 331 |
| AoxI | GGCC | 2 cut(s) | 3, 173 |
| ApeKI | GCWGC | 4 cut(s) | 248, 359, 496, 499 |
| ApoI | RAATTY | 1 cut(s) | 128 |
| AspS9I | GGNCC | 1 cut(s) | 476 |
| AsuC2I | CCSGG | 1 cut(s) | 541 |
| AvaII | GGWCC | 1 cut(s) | 476 |
| BaeGI | GKGCMC | 1 cut(s) | 541 |
| BamHI | GGATCC | 1 cut(s) | 256 |
| BbvCI | CCTCAGC | 1 cut(s) | 349 |
| BbvI | GCAGC | 4 cut(s) | 235, 371, 483, 486 |
| BccI | CCATC | 1 cut(s) | 269 |
| BciT130I | CCWGG | 1 cut(s) | 222 |
| BcnI | CCSGG | 1 cut(s) | 541 |
| BfaI | CTAG | 1 cut(s) | 383 |
| BfmI | CTRYAG | 1 cut(s) | 500 |
| BisI | GCNGC | 4 cut(s) | 249, 360, 497, 500 |
| BlsI | GCNGC | 4 cut(s) | 250, 361, 498, 501 |
| Bme1390I | CCNGG | 2 cut(s) | 222, 541 |
| Bme18I | GGWCC | 1 cut(s) | 476 |
| BmgT120I | GGNCC | 1 cut(s) | 476 |
| BmiI | GGNNCC | 2 cut(s) | 258, 286 |
| BmrFI | CCNGG | 2 cut(s) | 222, 541 |
| BmsI | GCATC | 4 cut(s) | 44, 235, 407, 532 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 163, 195 |
| Bpu10I | CCTNAGC | 1 cut(s) | 349 |
| BpuEI | CTTGAG | 1 cut(s) | 88 |
| BpuMI | CCSGG | 1 cut(s) | 541 |
| BsaBI | GATNNNNATC | 1 cut(s) | 455 |
| BsaJI | CCNNGG | 3 cut(s) | 220, 369, 441 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 147, 182, 221 |
| Bse1I | ACTGG | 3 cut(s) | 472, 479, 553 |
| Bse8I | GATNNNNATC | 1 cut(s) | 455 |
| BseBI | CCWGG | 1 cut(s) | 222 |
| BseDI | CCNNGG | 3 cut(s) | 220, 369, 441 |
| BseJI | GATNNNNATC | 1 cut(s) | 455 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 147, 182, 221 |
| BseMII | CTCAG | 1 cut(s) | 363 |
| BseNI | ACTGG | 3 cut(s) | 472, 479, 553 |
| BseRI | GAGGAG | 1 cut(s) | 337 |
| BseSI | GKGCMC | 1 cut(s) | 541 |
| BseXI | GCAGC | 4 cut(s) | 235, 371, 483, 486 |
| BseYI | CCCAGC | 1 cut(s) | 280 |
| Bsh1285I | CGRYCG | 1 cut(s) | 459 |
| BshFI | GGCC | 2 cut(s) | 5, 175 |
| BsiEI | CGRYCG | 1 cut(s) | 459 |
| BsiSI | CCGG | 1 cut(s) | 541 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 147, 182, 221 |
| BsnI | GGCC | 2 cut(s) | 5, 175 |
| Bsp1286I | GDGCHC | 1 cut(s) | 541 |
| Bsp143I | GATC | 4 cut(s) | 256, 323, 375, 456 |
| Bsp19I | CCATGG | 1 cut(s) | 369 |
| BspACI | CCGC | 2 cut(s) | 216, 544 |
| BspANI | GGCC | 2 cut(s) | 5, 175 |
| BspCNI | CTCAG | 1 cut(s) | 362 |
| BspHI | TCATGA | 1 cut(s) | 135 |
| BspLI | GGNNCC | 2 cut(s) | 258, 286 |
| BspMAI | CTGCAG | 1 cut(s) | 504 |
| BspPI | GGATC | 3 cut(s) | 251, 264, 331 |
| BsrI | ACTGG | 3 cut(s) | 472, 479, 553 |
| BssECI | CCNNGG | 3 cut(s) | 220, 369, 441 |
| BssMI | GATC | 4 cut(s) | 256, 323, 375, 456 |
| BssT1I | CCWWGG | 2 cut(s) | 369, 441 |
| Bst2UI | CCWGG | 1 cut(s) | 222 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 197 |
| BstDEI | CTNAG | 1 cut(s) | 349 |
| BstDSI | CCRYGG | 1 cut(s) | 369 |
| BstKTI | GATC | 4 cut(s) | 259, 326, 378, 459 |
| BstMBI | GATC | 4 cut(s) | 256, 323, 375, 456 |
| BstMCI | CGRYCG | 1 cut(s) | 459 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 107, 116, 197, 350, 359, 365, 496, 520 |
| BstNI | CCWGG | 1 cut(s) | 222 |
| BstNSI | RCATGY | 1 cut(s) | 490 |
| BstSCI | CCNGG | 2 cut(s) | 220, 539 |
| BstSFI | CTRYAG | 1 cut(s) | 500 |
| BstSLI | GKGCMC | 1 cut(s) | 541 |
| BstV1I | GCAGC | 4 cut(s) | 235, 371, 483, 486 |
| BstX2I | RGATCY | 2 cut(s) | 256, 323 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 268 |
| BstYI | RGATCY | 2 cut(s) | 256, 323 |
| BsuRI | GGCC | 2 cut(s) | 5, 175 |
| BtgI | CCRYGG | 1 cut(s) | 369 |
| BtsIMutI | CAGTG | 1 cut(s) | 227 |
| CciI | TCATGA | 1 cut(s) | 135 |
| Cfr13I | GGNCC | 1 cut(s) | 476 |
| CviAII | CATG | 5 cut(s) | 17, 136, 341, 370, 487 |
| DdeI | CTNAG | 1 cut(s) | 349 |
| DpnI | GATC | 4 cut(s) | 258, 325, 377, 458 |
| DpnII | GATC | 4 cut(s) | 256, 323, 375, 456 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 443 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 443 |
| Eco130I | CCWWGG | 2 cut(s) | 369, 441 |
| Eco47I | GGWCC | 1 cut(s) | 476 |
| Eco57I | CTGAAG | 2 cut(s) | 96, 384 |
| EcoRII | CCWGG | 1 cut(s) | 220 |
| EcoT14I | CCWWGG | 2 cut(s) | 369, 441 |
| ErhI | CCWWGG | 2 cut(s) | 369, 441 |
| FaeI | CATG | 5 cut(s) | 20, 139, 344, 373, 490 |
| FaiI | YATR | 5 cut(s) | 18, 137, 342, 371, 488 |
| FatI | CATG | 5 cut(s) | 16, 135, 340, 369, 486 |
| FauI | CCCGC | 1 cut(s) | 223 |
| FblI | GTMKAC | 1 cut(s) | 483 |
| Fnu4HI | GCNGC | 4 cut(s) | 249, 360, 497, 500 |
| Fsp4HI | GCNGC | 4 cut(s) | 249, 360, 497, 500 |
| FspBI | CTAG | 1 cut(s) | 383 |
| GluI | GCNGC | 4 cut(s) | 249, 360, 497, 500 |
| GsaI | CCCAGC | 1 cut(s) | 284 |
| HaeIII | GGCC | 2 cut(s) | 5, 175 |
| HapII | CCGG | 1 cut(s) | 541 |
| Hin1II | CATG | 5 cut(s) | 20, 139, 344, 373, 490 |
| HincII | GTYRAC | 2 cut(s) | 336, 465 |
| HindII | GTYRAC | 2 cut(s) | 336, 465 |
| HinfI | GANTC | 3 cut(s) | 299, 431, 437 |
| HpaI | GTTAAC | 1 cut(s) | 465 |
| HpaII | CCGG | 1 cut(s) | 541 |
| Hpy166II | GTNNAC | 3 cut(s) | 336, 465, 484 |
| Hpy188I | TCNGA | 4 cut(s) | 76, 84, 320, 436 |
| Hpy188III | TCNNGA | 4 cut(s) | 105, 136, 296, 448 |
| Hpy8I | GTNNAC | 3 cut(s) | 336, 465, 484 |
| HpyAV | CCTTC | 1 cut(s) | 16 |
| HpyCH4V | TGCA | 5 cut(s) | 191, 200, 359, 398, 502 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 107, 116, 197, 350, 359, 365, 496, 520 |
| HpyF3I | CTNAG | 1 cut(s) | 349 |
| Hsp92II | CATG | 5 cut(s) | 20, 139, 344, 373, 490 |
| KspAI | GTTAAC | 1 cut(s) | 465 |
| Kzo9I | GATC | 4 cut(s) | 256, 323, 375, 456 |
| LmnI | GCTCC | 1 cut(s) | 85 |
| LpnPI | CCDG | 9 cut(s) | 167, 207, 234, 266, 413, 453, 492, 500, 534 |
| Lsp1109I | GCAGC | 4 cut(s) | 235, 371, 483, 486 |
| LweI | GCATC | 4 cut(s) | 44, 235, 407, 532 |
| MaeI | CTAG | 1 cut(s) | 383 |
| MalI | GATC | 4 cut(s) | 258, 325, 377, 458 |
| MboI | GATC | 4 cut(s) | 256, 323, 375, 456 |
| MboII | GAAGA | 4 cut(s) | 58, 318, 393, 408 |
| MflI | RGATCY | 2 cut(s) | 256, 323 |
| MhlI | GDGCHC | 1 cut(s) | 541 |
| MluCI | AATT | 3 cut(s) | 70, 128, 234 |
| MlyI | GAGTC | 1 cut(s) | 431 |
| MmeI | TCCRAC | 1 cut(s) | 107 |
| MnlI | CCTC | 7 cut(s) | 97, 112, 153, 165, 314, 355, 358 |
| MseI | TTAA | 2 cut(s) | 237, 464 |
| MspA1I | CMGCKG | 2 cut(s) | 362, 427 |
| MspI | CCGG | 1 cut(s) | 541 |
| MspR9I | CCNGG | 2 cut(s) | 222, 541 |
| MvaI | CCWGG | 1 cut(s) | 222 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 107, 116, 197, 350, 359, 365, 496, 520 |
| NciI | CCSGG | 1 cut(s) | 541 |
| NcoI | CCATGG | 1 cut(s) | 369 |
| NdeII | GATC | 4 cut(s) | 256, 323, 375, 456 |
| NlaIII | CATG | 5 cut(s) | 20, 139, 344, 373, 490 |
| NlaIV | GGNNCC | 2 cut(s) | 258, 286 |
| NspI | RCATGY | 1 cut(s) | 490 |
| PagI | TCATGA | 1 cut(s) | 135 |
| PfeI | GAWTC | 2 cut(s) | 299, 431 |
| PkrI | GCNGC | 4 cut(s) | 250, 361, 498, 501 |
| Ple19I | CGATCG | 1 cut(s) | 459 |
| PleI | GAGTC | 1 cut(s) | 431 |
| PpsI | GAGTC | 1 cut(s) | 431 |
| Psp6I | CCWGG | 1 cut(s) | 220 |
| PspFI | CCCAGC | 1 cut(s) | 280 |
| PspGI | CCWGG | 1 cut(s) | 220 |
| PspN4I | GGNNCC | 2 cut(s) | 258, 286 |
| PspPI | GGNCC | 1 cut(s) | 476 |
| PstI | CTGCAG | 1 cut(s) | 504 |
| PsuI | RGATCY | 2 cut(s) | 256, 323 |
| PvuI | CGATCG | 1 cut(s) | 459 |
| PvuII | CAGCTG | 2 cut(s) | 362, 427 |
| SaqAI | TTAA | 2 cut(s) | 237, 464 |
| SatI | GCNGC | 4 cut(s) | 249, 360, 497, 500 |
| Sau3AI | GATC | 4 cut(s) | 256, 323, 375, 456 |
| Sau96I | GGNCC | 1 cut(s) | 476 |
| SchI | GAGTC | 1 cut(s) | 431 |
| ScrFI | CCNGG | 2 cut(s) | 222, 541 |
| SduI | GDGCHC | 1 cut(s) | 541 |
| SetI | ASST | 6 cut(s) | 82, 89, 290, 355, 364, 429 |
| SfaNI | GCATC | 4 cut(s) | 44, 235, 407, 532 |
| SfcI | CTRYAG | 1 cut(s) | 500 |
| SinI | GGWCC | 1 cut(s) | 476 |
| SmlI | CTYRAG | 1 cut(s) | 103 |
| SmoI | CTYRAG | 1 cut(s) | 103 |
| Sse9I | AATT | 3 cut(s) | 70, 128, 234 |
| SsiI | CCGC | 2 cut(s) | 216, 544 |
| SspMI | CTAG | 1 cut(s) | 383 |
| StyD4I | CCNGG | 2 cut(s) | 220, 539 |
| StyI | CCWWGG | 2 cut(s) | 369, 441 |
| TaqI | TCGA | 3 cut(s) | 295, 455, 459 |
| TasI | AATT | 3 cut(s) | 70, 128, 234 |
| TfiI | GAWTC | 2 cut(s) | 299, 431 |
| Tru1I | TTAA | 2 cut(s) | 237, 464 |
| Tru9I | TTAA | 2 cut(s) | 237, 464 |
| TscAI | CASTG | 1 cut(s) | 234 |
| TseI | GCWGC | 4 cut(s) | 248, 359, 496, 499 |
| TspDTI | ATGAA | 1 cut(s) | 28 |
| TspGWI | ACGGA | 1 cut(s) | 140 |
| TspRI | CASTG | 1 cut(s) | 234 |
| VpaK11BI | GGWCC | 1 cut(s) | 476 |
| XapI | RAATTY | 1 cut(s) | 128 |
| XceI | RCATGY | 1 cut(s) | 490 |
| XmiI | GTMKAC | 1 cut(s) | 483 |
| XspI | CTAG | 1 cut(s) | 383 |