FvH4_4g21421

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000093
Physical Location & Seq
Reverse (-)
24493430 .. 24496851
3422 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g21421.t1

Sequence Viewer

Length: 1233 bp
ATGGAGAAGGAAGAGAGCATTAGAGATGAATTTGAGGGATATTTTAAAAGCTTATTTACTGGAGTTGGGCCAAGAATCTGGACAGAAGCTCTTGAGGCAATTAATCCAGTTATTTCGGAGGACACAAATATCAATCTGACCCAGCCAATCTCAATTGAAGAGATCAAGGACCAGACGGTTTTCACGGCATATTCTACCAAAATCCAGGATAACATCCTAGTTGCCCATGGAGCCTACCACTATCTAAAGTTGAGAAAAAGTGGAGACATCCATGAACTAGCCCTCAAGCTTGACATGAGCAAAACTTATGATAGGGTTGAGTGGGACTTTCTAGCGGCAATCATGTTGAAATTAGGATTTGGAAGAGGGTGGGTATCCTTGATTATGGGTTGTGTCAAATTTGTCACTTTTGCAGTCACCATCAATGGAAAAACAGGAGAGTACTTCAAACCTTCAAGGGGGCTCAGTCAAAGAGACCCCATATCTCCTTACCTTTTTCTCTTCACTACTGAGGTCTTCTCTTCTCTCATTCAAAGAGCTGCGGGAAGGGAGGTTCTAATCAAATCAGTGGCATTGGCGGTTCCTAACTATCTGATGCACTGCTTCAAATTCCCGGTTACTCTATGCAAGGAGATTGATGTTACGTGCTACAAGCTAGGAAAGGATCCAGAGCTTCTTGGGCATAGAGCAGTCTCCTTGAAGGCCACCACTATCCATCCTTTGTTGATTGCATTTCGAGCAGGAAAAGCCACTATGGAATTCCTGAAAGCAAACAATCATGGTGACCATCATGAACGAGTGCGTAATGACAATGAAGCTCTTGTTGATGGTGTATCTCTTTATTGCCGTTCAAGTTCGGCAATCGAAGCTGAAGGAAAAGCCACCATCGTTGCTCTCTCTTGTGCCCAGAAGTATATTCACCTCCTTGTTCAAATTGAATCAGACTATGAAGATTTAGTGAAAGGCATTAATGGTATCAACTCTGATAGGGATTGGAGAATCTCACCTGTGATTGCTCGGATTCGAGCAGCTCTCCCTCCATGCAGGCTAATCTCTTGGTCTTGGATTCCCAGAAAAGCGAACTGCGCAGCCCATCACGTTGCATCGCTTAGTGTGAGGAAGACGTGCCCGGATGTCTGGATTGATAAGCCCCTGTCTTCCCTGGTCCATGTTCTCTCTCGTGACGGCTTGCCGTGTCCACCACCGGCGTCAATAGCAGAGCAAAGACCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

411

Amino Acids

45.9

Weight (kDa)

8.24

Isoelectric Point (pI)

30.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_1 PF00078 89 - 181 3.4e-07 Reverse transcriptase (RNA-dependent DNA polymerase)
RVT_3 PF13456 268 - 369 4.5e-11 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000093)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G09490
fragaria_vesca FvH4_1g23791 FvH4_2g01641 FvH4_2g04612 FvH4_2g06831 FvH4_2g07841 FvH4_2g13581 FvH4_2g27220 FvH4_2g30621 FvH4_2g34753 FvH4_3g10392 FvH4_3g24291 FvH4_3g25030 FvH4_3g29361 FvH4_3g31372 FvH4_3g32402 FvH4_3g43651 FvH4_4g03830 FvH4_4g05481 FvH4_4g20431 FvH4_4g21421 FvH4_4g25931 FvH4_5g08801 FvH4_5g21021 FvH4_5g26254 FvH4_5g30931 FvH4_5g31281 FvH4_5g33581 FvH4_5g35622 FvH4_6g02100 FvH4_6g07963 FvH4_6g11620 FvH4_6g16031 FvH4_6g19041 FvH4_6g24211 FvH4_6g24271 FvH4_6g30670 FvH4_6g49540 FvH4_7g25914
malus_domestica MD03G1245200.v1.1 MD04G1168000.v1.1 MD09G1242600.v1.1 MD15G1334000.v1.1 MD17G1165700.v1.1
prunus_persica Prupe.1G073500_v2.0.a1 Prupe.1G283700_v2.0.a1 Prupe.1G524100_v2.0.a1 Prupe.2G022700_v2.0.a1 Prupe.2G022800_v2.0.a1 Prupe.2G022800_v2.0.a1 Prupe.2G044300_v2.0.a1 Prupe.2G048800_v2.0.a1 Prupe.2G092000_v2.0.a1 Prupe.2G216500_v2.0.a1 Prupe.2G216600_v2.0.a1 Prupe.2G216600_v2.0.a1 Prupe.3G103400_v2.0.a1 Prupe.3G143300_v2.0.a1 Prupe.3G190000_v2.0.a1 Prupe.3G219800_v2.0.a1 Prupe.4G177800_v2.0.a1 Prupe.4G261300_v2.0.a1 Prupe.5G044600_v2.0.a1 Prupe.5G067400_v2.0.a1 Prupe.7G083900_v2.0.a1 Prupe.7G120900_v2.0.a1 Prupe.8G032200_v2.0.a1 Prupe.8G036100_v2.0.a1 Prupe.8G042700_v2.0.a1
pyrus_communis pycom01g21710 pycom02g19770 pycom03g05120 pycom05g01370 pycom05g08780 pycom05g10120 pycom07g01370 pycom07g05930 pycom08g15760 pycom08g18090 pycom08g21060 pycom09g03880 pycom10g03870 pycom13g22240 pycom16g05120 pycom16g17170 pycom17g12180 pycom17g16290 pycom17g21230 pycom17g24990 pycom215g00100
rosa_chinensis RchiOBHm_Chr1g0323031 RchiOBHm_Chr1g0324391 RchiOBHm_Chr1g0326401 RchiOBHm_Chr1g0327811 RchiOBHm_Chr1g0332521 RchiOBHm_Chr1g0336501 RchiOBHm_Chr1g0346021 RchiOBHm_Chr1g0347191 RchiOBHm_Chr1g0367181 RchiOBHm_Chr2g0089441 RchiOBHm_Chr2g0115441 RchiOBHm_Chr3g0490691 RchiOBHm_Chr4g0395251 RchiOBHm_Chr4g0398081 RchiOBHm_Chr4g0409451 RchiOBHm_Chr4g0413041 RchiOBHm_Chr4g0415471 RchiOBHm_Chr4g0420961 RchiOBHm_Chr5g0040301 RchiOBHm_Chr5g0070651 RchiOBHm_Chr6g0263011 RchiOBHm_Chr6g0270721 RchiOBHm_Chr6g0277111 RchiOBHm_Chr7g0179771 RchiOBHm_Chr7g0223051 RchiOBHm_Chr7g0225031 RchiOBHm_Chr7g0225091
rosa_laevigata RLG00000001668 RLG00000001672 RLG00000001676 RLG00000007762 RLG00000008994 RLG00000011117 RLG00000013729 RLG00000013839 RLG00000014759 RLG00000016638 RLG00000018535 RLG00000018614 RLG00000018646 RLG00000020679 RLG00000023337 RLG00000029348 RLG00000035891 RLG00000035912
rosa_multiflora Rmu_co8152500.1_g000001 Rmu_co8203314.1_g000001 Rmu_co8383183.1_g000001 Rmu_sc0000293.1_g000033 Rmu_sc0000367.1_g000226 Rmu_sc0000512.1_g000023 Rmu_sc0000594.1_g000059 Rmu_sc0000654.1_g000022 Rmu_sc0000654.1_g000047 Rmu_sc0000706.1_g000037 Rmu_sc0001348.1_g000008 Rmu_sc0001385.1_g000024 Rmu_sc0001405.1_g000002 Rmu_sc0001521.1_g000048 Rmu_sc0001932.1_g000008 Rmu_sc0001932.1_g000009 Rmu_sc0002535.1_g000011 Rmu_sc0002908.1_g000019 Rmu_sc0003709.1_g000004 Rmu_sc0003882.1_g000054 Rmu_sc0004035.1_g000007 Rmu_sc0004041.1_g000007 Rmu_sc0004288.1_g000011 Rmu_sc0004569.1_g000004 Rmu_sc0004677.1_g000016 Rmu_sc0004834.1_g000010 Rmu_sc0005193.1_g000008 Rmu_sc0005354.1_g000009 Rmu_sc0006514.1_g000021 Rmu_sc0006691.1_g000001 Rmu_sc0006888.1_g000021 Rmu_sc0006889.1_g000013 Rmu_sc0008096.1_g000017 Rmu_sc0008378.1_g000003 Rmu_sc0009127.1_g000005 Rmu_sc0009191.1_g000016 Rmu_sc0009687.1_g000018 Rmu_sc0009709.1_g000005 Rmu_sc0009880.1_g000015 Rmu_sc0011710.1_g000001 Rmu_sc0012615.1_g000004 Rmu_sc0016091.1_g000002 Rmu_sc0022339.1_g000006 Rmu_sc0026537.1_g000002 Rmu_sc0027689.1_g000002 Rmu_sc0036222.1_g000001 Rmu_sc0040890.1_g000001 Rmu_ssc0000148.1_g000006 Rmu_ssc0000151.1_g000017 Rmu_ssc0000404.1_g000018 Rmu_ssc0000449.1_g000009
rosa_roxburghii Rroxscaffold_1G00017760 Rroxscaffold_1G00059150 Rroxscaffold_2G00142560 Rroxscaffold_3G00220440 Rroxscaffold_3G00231700 Rroxscaffold_3G00232400 Rroxscaffold_3G00274510 Rroxscaffold_4G00288790 Rroxscaffold_4G00305680 Rroxscaffold_4G00314880 Rroxscaffold_4G00314900 Rroxscaffold_5G00334590 Rroxscaffold_6G00394110 Rroxscaffold_6G00415860 Rroxscaffold_7G00168240 Rroxscaffold_7G00204400 Rroxscaffold_7G00207840
rosa_rugosa Rorug01G0034900 Rorug02G0079500 Rorug02G0229000 Rorug02G0229100 Rorug02G0291400 Rorug02G0298800 Rorug03G0046400 Rorug03G0064700 Rorug03G0077300 Rorug03G0199000 Rorug03G0200400 Rorug04G0205200 Rorug05G0025400 Rorug05G0127400 Rorug05G0192100 Rorug05G0453400 Rorug05G0538300 Rorug06G0035200 Rorug06G0241000 Rorug06G0268300 Rorug07G0120300 Rorug07G0145000 Rorug07G0209100 Rorug07G0240500 Rorug07G0271700
rosa_samantha Rh1AG179100 Rh1BG106900 Rh1BG163400 Rh1BG163500 Rh1BG323500 Rh2CG447900 Rh2DG503700 Rh3AG293600 Rh3CG229100 Rh3DG221500 Rh4AG106000 Rh4BG267700 Rh4CG062500 Rh4CG090100 Rh4CG114800 Rh5AG038400 Rh5BG395400 Rh5CG441700 Rh5CG572000 Rh6AG222400 Rh6AG264500 Rh6BG137400 Rh6BG225700 Rh6CG144300 Rh6DG087600 Rh6DG096000 Rh6DG362400 Rh6DG390200 Rh7AG207500 Rh7AG324700 Rh7AG388800 Rh7AG437100 Rh7BG019000 Rh7BG374600 Rh7CG028700 Rh7CG341500 Rh7CG408000 Rh7CG408300 Rh7DG354600
rosa_wichuraiana Rw0G009630 Rw0G012170 Rw4G022700 Rw5G028420 Rw5G029490 Rw6G007220 Rw6G007410 Rw6G017880 Rw7G012440 Rw7G021830 Rw7G027490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1087
AciI CCGC 3 cut(s) 335, 542, 578
AclWI GGATC 2 cut(s) 659, 672
AcsI RAATTY 4 cut(s) 29, 398, 608, 758
AcuI CTGAAG 1 cut(s) 891
AcyI GRCGYC 1 cut(s) 1208
AfaI GTAC 1 cut(s) 443
AfiI CCNNNNNNNGG 1 cut(s) 458
AjiI CACGTC 1 cut(s) 1125
AjnI CCWGG 2 cut(s) 204, 1161
AloI GAACNNNNNNTCC 2 cut(s) 537, 569
AluBI AGCT 9 cut(s) 51, 89, 289, 539, 655, 673, 818, 869, 1031
AluI AGCT 9 cut(s) 51, 89, 289, 539, 655, 673, 818, 869, 1031
Alw26I GTCTC 3 cut(s) 258, 468, 697
AlwI GGATC 2 cut(s) 659, 672
AoxI GGCC 2 cut(s) 68, 702
ApeKI GCWGC 3 cut(s) 539, 1028, 1088
ApoI RAATTY 4 cut(s) 29, 398, 608, 758
AseI ATTAAT 2 cut(s) 102, 969
AspLEI GCGC 1 cut(s) 1088
AspS9I GGNCC 3 cut(s) 68, 169, 1165
AsuC2I CCSGG 2 cut(s) 614, 1130
AsuHPI GGTGA 4 cut(s) 409, 794, 911, 996
AvaII GGWCC 2 cut(s) 169, 1165
BaeGI GKGCMC 2 cut(s) 907, 1130
BamHI GGATCC 1 cut(s) 664
BanII GRGCYC 1 cut(s) 465
BauI CACGAG 1 cut(s) 1179
BbsI GAAGAC 3 cut(s) 508, 1127, 1149
BbvI GCAGC 3 cut(s) 526, 1040, 1100
BccI CCATC 6 cut(s) 428, 723, 795, 821, 893, 1101
BceAI ACGGC 4 cut(s) 201, 831, 1177, 1201
BciT130I CCWGG 2 cut(s) 206, 1163
BciVI GTATCC 1 cut(s) 385
BcnI CCSGG 2 cut(s) 614, 1130
BcoDI GTCTC 3 cut(s) 258, 468, 697
BfaI CTAG 4 cut(s) 218, 278, 332, 656
BfuI GTATCC 1 cut(s) 385
BisI GCNGC 4 cut(s) 336, 540, 1029, 1089
BlsI GCNGC 4 cut(s) 337, 541, 1030, 1090
BmcAI AGTACT 1 cut(s) 443
Bme1390I CCNGG 4 cut(s) 206, 614, 1130, 1163
Bme18I GGWCC 2 cut(s) 169, 1165
BmgBI CACGTC 1 cut(s) 1125
BmgT120I GGNCC 3 cut(s) 68, 169, 1165
BmiI GGNNCC 3 cut(s) 232, 582, 666
BmrFI CCNGG 4 cut(s) 206, 614, 1130, 1163
BmsI GCATC 2 cut(s) 585, 1112
BpiI GAAGAC 3 cut(s) 508, 1127, 1149
BplI GAGNNNNNCTC 4 cut(s) 503, 535, 1017, 1049
BpmI CTGGAG 1 cut(s) 81
BpuEI CTTGAG 2 cut(s) 113, 269
BpuMI CCSGG 2 cut(s) 614, 1130
BsaAI YACGTR 1 cut(s) 645
BsaHI GRCGYC 1 cut(s) 1208
BsaI GGTCTC 1 cut(s) 468
BsaJI CCNNGG 2 cut(s) 226, 1161
Bsc4I CCNNNNNNNGG 1 cut(s) 458
Bse118I RCCGGY 1 cut(s) 1204
Bse1I ACTGG 2 cut(s) 64, 107
BseBI CCWGG 2 cut(s) 206, 1163
BseDI CCNNGG 2 cut(s) 226, 1161
BseGI GGATG 4 cut(s) 213, 267, 715, 1138
BseLI CCNNNNNNNGG 1 cut(s) 458
BseMII CTCAG 2 cut(s) 478, 501
BseNI ACTGG 2 cut(s) 64, 107
BseSI GKGCMC 2 cut(s) 907, 1130
BseXI GCAGC 3 cut(s) 526, 1040, 1100
BseYI CCCAGC 1 cut(s) 141
BshFI GGCC 2 cut(s) 70, 704
BsiSI CCGG 3 cut(s) 614, 1130, 1205
BslFI GGGAC 1 cut(s) 338
BslI CCNNNNNNNGG 1 cut(s) 458
BsmAI GTCTC 3 cut(s) 258, 468, 697
BsmFI GGGAC 1 cut(s) 338
BsnI GGCC 2 cut(s) 70, 704
Bso31I GGTCTC 1 cut(s) 468
Bsp1286I GDGCHC 3 cut(s) 465, 907, 1130
Bsp143I GATC 2 cut(s) 162, 664
Bsp19I CCATGG 1 cut(s) 226
BspACI CCGC 3 cut(s) 335, 542, 578
BspANI GGCC 2 cut(s) 70, 704
BspCNI CTCAG 2 cut(s) 477, 502
BspHI TCATGA 1 cut(s) 790
BspLI GGNNCC 3 cut(s) 232, 582, 666
BspPI GGATC 2 cut(s) 659, 672
BspTNI GGTCTC 1 cut(s) 468
BsrFI RCCGGY 1 cut(s) 1204
BsrI ACTGG 2 cut(s) 64, 107
BssAI RCCGGY 1 cut(s) 1204
BssECI CCNNGG 2 cut(s) 226, 1161
BssMI GATC 2 cut(s) 162, 664
BssNI GRCGYC 1 cut(s) 1208
BssSI CACGAG 1 cut(s) 1179
BssT1I CCWWGG 1 cut(s) 226
Bst2BI CACGAG 1 cut(s) 1179
Bst2UI CCWGG 2 cut(s) 206, 1163
Bst4CI ACNGT 2 cut(s) 178, 1230
Bst6I CTCTTC 5 cut(s) 6, 153, 358, 506, 526
BstACI GRCGYC 1 cut(s) 1208
BstBAI YACGTR 1 cut(s) 645
BstC8I GCNNGC 2 cut(s) 1046, 1190
BstDEI CTNAG 3 cut(s) 464, 510, 1109
BstDSI CCRYGG 1 cut(s) 226
BstEII GGTNACC 1 cut(s) 782
BstF5I GGATG 4 cut(s) 213, 267, 715, 1138
BstHHI GCGC 1 cut(s) 1088
BstKTI GATC 2 cut(s) 165, 667
BstMAI GTCTC 3 cut(s) 258, 468, 697
BstMBI GATC 2 cut(s) 162, 664
BstMWI GCNNNNNNNGC 8 cut(s) 95, 230, 679, 737, 746, 866, 1085, 1214
BstNI CCWGG 2 cut(s) 206, 1163
BstPI GGTNACC 1 cut(s) 782
BstSCI CCNGG 4 cut(s) 204, 612, 1128, 1161
BstSLI GKGCMC 2 cut(s) 907, 1130
BstV1I GCAGC 3 cut(s) 526, 1040, 1100
BstV2I GAAGAC 3 cut(s) 508, 1127, 1149
BstX2I RGATCY 1 cut(s) 664
BstXI CCANNNNNNTGG 1 cut(s) 78
BstYI RGATCY 1 cut(s) 664
BsuI GTATCC 1 cut(s) 385
BsuRI GGCC 2 cut(s) 70, 704
BtgI CCRYGG 1 cut(s) 226
BtgZI GCGATG 1 cut(s) 1089
BtrI CACGTC 1 cut(s) 1125
BtsCI GGATG 4 cut(s) 213, 267, 715, 1138
BtsI GCAGTG 1 cut(s) 598
BtsIMutI CAGTG 2 cut(s) 573, 598
Cac8I GCNNGC 2 cut(s) 1046, 1190
CciI TCATGA 1 cut(s) 790
CfoI GCGC 1 cut(s) 1088
Cfr10I RCCGGY 1 cut(s) 1204
Cfr13I GGNCC 3 cut(s) 68, 169, 1165
CseI GACGC 1 cut(s) 1197
Csp6I GTAC 1 cut(s) 442
CspCI CAANNNNNGTGG 2 cut(s) 871, 906
CviAII CATG 8 cut(s) 227, 272, 295, 343, 779, 791, 1041, 1169
CviQI GTAC 1 cut(s) 442
DdeI CTNAG 3 cut(s) 464, 510, 1109
DpnI GATC 2 cut(s) 164, 666
DpnII GATC 2 cut(s) 162, 664
DraI TTTAAA 1 cut(s) 46
Eam1104I CTCTTC 5 cut(s) 6, 153, 358, 506, 526
EarI CTCTTC 5 cut(s) 6, 153, 358, 506, 526
Eco130I CCWWGG 1 cut(s) 226
Eco24I GRGCYC 1 cut(s) 465
Eco31I GGTCTC 1 cut(s) 468
Eco47I GGWCC 2 cut(s) 169, 1165
Eco57I CTGAAG 1 cut(s) 891
Eco91I GGTNACC 1 cut(s) 782
EcoO65I GGTNACC 1 cut(s) 782
EcoRI GAATTC 1 cut(s) 758
EcoRII CCWGG 2 cut(s) 204, 1161
EcoT14I CCWWGG 1 cut(s) 226
EcoT38I GRGCYC 1 cut(s) 465
ErhI CCWWGG 1 cut(s) 226
FaeI CATG 8 cut(s) 230, 275, 298, 346, 782, 794, 1044, 1172
FaqI GGGAC 1 cut(s) 338
FatI CATG 8 cut(s) 226, 271, 294, 342, 778, 790, 1040, 1168
FauI CCCGC 1 cut(s) 535
Fnu4HI GCNGC 4 cut(s) 336, 540, 1029, 1089
FokI GGATG 4 cut(s) 200, 254, 702, 1145
FriOI GRGCYC 1 cut(s) 465
Fsp4HI GCNGC 4 cut(s) 336, 540, 1029, 1089
FspBI CTAG 4 cut(s) 218, 278, 332, 656
FspI TGCGCA 1 cut(s) 1087
GlaI GCGC 1 cut(s) 1087
GluI GCNGC 4 cut(s) 336, 540, 1029, 1089
GsaI CCCAGC 1 cut(s) 145
GsuI CTGGAG 1 cut(s) 81
HaeIII GGCC 2 cut(s) 70, 704
HapII CCGG 3 cut(s) 614, 1130, 1205
HgaI GACGC 1 cut(s) 1197
HhaI GCGC 1 cut(s) 1088
Hin1I GRCGYC 1 cut(s) 1208
Hin1II CATG 8 cut(s) 230, 275, 298, 346, 782, 794, 1044, 1172
Hin6I GCGC 1 cut(s) 1086
HinP1I GCGC 1 cut(s) 1086
HindIII AAGCTT 2 cut(s) 49, 287
HinfI GANTC 5 cut(s) 75, 938, 999, 1021, 1066
HpaII CCGG 3 cut(s) 614, 1130, 1205
HphI GGTGA 4 cut(s) 409, 794, 911, 996
Hpy166II GTNNAC 1 cut(s) 1199
Hpy188I TCNGA 6 cut(s) 118, 138, 594, 943, 985, 1020
Hpy188III TCNNGA 7 cut(s) 79, 92, 668, 763, 791, 1138, 1181
Hpy8I GTNNAC 1 cut(s) 1199
HpyAV CCTTC 4 cut(s) 462, 540, 694, 866
HpyCH4III ACNGT 2 cut(s) 178, 1230
HpyCH4IV ACGT 3 cut(s) 644, 1098, 1124
HpyCH4V TGCA 6 cut(s) 413, 598, 627, 731, 1044, 1103
HpyF10VI GCNNNNNNNGC 8 cut(s) 95, 230, 679, 737, 746, 866, 1085, 1214
HpyF3I CTNAG 3 cut(s) 464, 510, 1109
HpySE526I ACGT 3 cut(s) 644, 1098, 1124
Hsp92I GRCGYC 1 cut(s) 1208
Hsp92II CATG 8 cut(s) 230, 275, 298, 346, 782, 794, 1044, 1172
HspAI GCGC 1 cut(s) 1086
Kzo9I GATC 2 cut(s) 162, 664
LmnI GCTCC 1 cut(s) 230
Lsp1109I GCAGC 3 cut(s) 526, 1040, 1100
LweI GCATC 2 cut(s) 585, 1112
MaeI CTAG 4 cut(s) 218, 278, 332, 656
MaeII ACGT 3 cut(s) 644, 1098, 1124
MaeIII GTNAC 6 cut(s) 403, 415, 616, 640, 782, 1181
MalI GATC 2 cut(s) 164, 666
MboI GATC 2 cut(s) 162, 664
MboII GAAGA 9 cut(s) 23, 170, 375, 493, 508, 513, 962, 1132, 1149
MfeI CAATTG 1 cut(s) 153
MflI RGATCY 1 cut(s) 664
MhlI GDGCHC 3 cut(s) 465, 907, 1130
MluCI AATT 8 cut(s) 29, 99, 153, 350, 398, 608, 758, 933
MseI TTAA 3 cut(s) 45, 102, 969
MspI CCGG 3 cut(s) 614, 1130, 1205
MspR9I CCNGG 4 cut(s) 206, 614, 1130, 1163
MunI CAATTG 1 cut(s) 153
MvaI CCWGG 2 cut(s) 206, 1163
MwoI GCNNNNNNNGC 8 cut(s) 95, 230, 679, 737, 746, 866, 1085, 1214
NciI CCSGG 2 cut(s) 614, 1130
NcoI CCATGG 1 cut(s) 226
NdeII GATC 2 cut(s) 162, 664
NlaIII CATG 8 cut(s) 230, 275, 298, 346, 782, 794, 1044, 1172
NlaIV GGNNCC 3 cut(s) 232, 582, 666
NmuCI GTSAC 4 cut(s) 403, 415, 782, 1181
NsbI TGCGCA 1 cut(s) 1087
PagI TCATGA 1 cut(s) 790
PfeI GAWTC 5 cut(s) 75, 938, 999, 1021, 1066
PfoI TCCNGGA 1 cut(s) 204
PkrI GCNGC 4 cut(s) 337, 541, 1030, 1090
Ppu21I YACGTR 1 cut(s) 645
PshBI ATTAAT 2 cut(s) 102, 969
Psp6I CCWGG 2 cut(s) 204, 1161
PspEI GGTNACC 1 cut(s) 782
PspFI CCCAGC 1 cut(s) 141
PspGI CCWGG 2 cut(s) 204, 1161
PspN4I GGNNCC 3 cut(s) 232, 582, 666
PspPI GGNCC 3 cut(s) 68, 169, 1165
PsuI RGATCY 1 cut(s) 664
RsaI GTAC 1 cut(s) 443
RsaNI GTAC 1 cut(s) 442
SaqAI TTAA 3 cut(s) 45, 102, 969
SatI GCNGC 4 cut(s) 336, 540, 1029, 1089
Sau3AI GATC 2 cut(s) 162, 664
Sau96I GGNCC 3 cut(s) 68, 169, 1165
ScaI AGTACT 1 cut(s) 443
ScrFI CCNGG 4 cut(s) 206, 614, 1130, 1163
SduI GDGCHC 3 cut(s) 465, 907, 1130
SfaNI GCATC 2 cut(s) 585, 1112
SgrAI CRCCGGYG 1 cut(s) 1204
SinI GGWCC 2 cut(s) 169, 1165
SmlI CTYRAG 2 cut(s) 92, 284
SmoI CTYRAG 2 cut(s) 92, 284
Sse9I AATT 8 cut(s) 29, 99, 153, 350, 398, 608, 758, 933
SsiI CCGC 3 cut(s) 335, 542, 578
SspMI CTAG 4 cut(s) 218, 278, 332, 656
StyD4I CCNGG 4 cut(s) 204, 612, 1128, 1161
StyI CCWWGG 1 cut(s) 226
TaaI ACNGT 2 cut(s) 178, 1230
TaiI ACGT 3 cut(s) 647, 1101, 1127
TaqI TCGA 3 cut(s) 736, 864, 1024
TasI AATT 8 cut(s) 29, 99, 153, 350, 398, 608, 758, 933
TatI WGTACW 1 cut(s) 441
TauI GCSGC 1 cut(s) 338
TfiI GAWTC 5 cut(s) 75, 938, 999, 1021, 1066
Tru1I TTAA 3 cut(s) 45, 102, 969
Tru9I TTAA 3 cut(s) 45, 102, 969
TscAI CASTG 2 cut(s) 573, 605
TseFI GTSAC 4 cut(s) 403, 415, 782, 1181
TseI GCWGC 3 cut(s) 539, 1028, 1088
Tsp45I GTSAC 4 cut(s) 403, 415, 782, 1181
TspDTI ATGAA 5 cut(s) 42, 288, 807, 828, 963
TspRI CASTG 2 cut(s) 573, 605
VpaK11BI GGWCC 2 cut(s) 169, 1165
VspI ATTAAT 2 cut(s) 102, 969
XapI RAATTY 4 cut(s) 29, 398, 608, 758
XspI CTAG 4 cut(s) 218, 278, 332, 656
ZrmI AGTACT 1 cut(s) 443
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.