ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 88 - 183 | 1.6e-07 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 82 |
| Acc36I | ACCTGC | 1 cut(s) | 368 |
| AciI | CCGC | 2 cut(s) | 386, 513 |
| AclWI | GGATC | 2 cut(s) | 68, 202 |
| AcsI | RAATTY | 3 cut(s) | 280, 469, 533 |
| AcuI | CTGAAG | 2 cut(s) | 245, 402 |
| AfaI | GTAC | 2 cut(s) | 334, 527 |
| AgsI | TTSAA | 2 cut(s) | 262, 285 |
| AluBI | AGCT | 5 cut(s) | 86, 140, 299, 392, 422 |
| AluI | AGCT | 5 cut(s) | 86, 140, 299, 392, 422 |
| Alw26I | GTCTC | 1 cut(s) | 175 |
| AlwI | GGATC | 2 cut(s) | 68, 202 |
| AoxI | GGCC | 1 cut(s) | 502 |
| ApeKI | GCWGC | 1 cut(s) | 83 |
| ApoI | RAATTY | 3 cut(s) | 280, 469, 533 |
| AseI | ATTAAT | 1 cut(s) | 342 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 208 |
| AspLEI | GCGC | 1 cut(s) | 83 |
| AsuHPI | GGTGA | 1 cut(s) | 89 |
| BbvI | GCAGC | 1 cut(s) | 95 |
| BccI | CCATC | 1 cut(s) | 263 |
| BclI | TGATCA | 1 cut(s) | 94 |
| BcoDI | GTCTC | 1 cut(s) | 175 |
| BfaI | CTAG | 2 cut(s) | 108, 423 |
| BfuAI | ACCTGC | 1 cut(s) | 368 |
| BisI | GCNGC | 1 cut(s) | 84 |
| BlsI | GCNGC | 1 cut(s) | 85 |
| BsaJI | CCNNGG | 1 cut(s) | 113 |
| Bse1I | ACTGG | 1 cut(s) | 334 |
| BseDI | CCNNGG | 1 cut(s) | 113 |
| BseNI | ACTGG | 1 cut(s) | 334 |
| BseXI | GCAGC | 1 cut(s) | 95 |
| BseYI | CCCAGC | 1 cut(s) | 299 |
| BshFI | GGCC | 1 cut(s) | 504 |
| BslFI | GGGAC | 1 cut(s) | 495 |
| BsmAI | GTCTC | 1 cut(s) | 175 |
| BsmFI | GGGAC | 1 cut(s) | 495 |
| BsnI | GGCC | 1 cut(s) | 504 |
| Bsp143I | GATC | 3 cut(s) | 60, 94, 194 |
| BspACI | CCGC | 2 cut(s) | 386, 513 |
| BspANI | GGCC | 1 cut(s) | 504 |
| BspMI | ACCTGC | 1 cut(s) | 368 |
| BspPI | GGATC | 2 cut(s) | 68, 202 |
| BsrI | ACTGG | 1 cut(s) | 334 |
| BssECI | CCNNGG | 1 cut(s) | 113 |
| BssMI | GATC | 3 cut(s) | 60, 94, 194 |
| BssT1I | CCWWGG | 1 cut(s) | 113 |
| Bst4CI | ACNGT | 1 cut(s) | 525 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 374 |
| BstC8I | GCNNGC | 2 cut(s) | 164, 384 |
| BstDEI | CTNAG | 1 cut(s) | 403 |
| BstHHI | GCGC | 1 cut(s) | 83 |
| BstKTI | GATC | 3 cut(s) | 63, 97, 197 |
| BstMAI | GTCTC | 1 cut(s) | 175 |
| BstMBI | GATC | 3 cut(s) | 60, 94, 194 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 374, 383 |
| BstNSI | RCATGY | 2 cut(s) | 166, 386 |
| BstV1I | GCAGC | 1 cut(s) | 95 |
| BsuRI | GGCC | 1 cut(s) | 504 |
| BveI | ACCTGC | 1 cut(s) | 368 |
| Cac8I | GCNNGC | 2 cut(s) | 164, 384 |
| CfoI | GCGC | 1 cut(s) | 83 |
| CseI | GACGC | 1 cut(s) | 318 |
| Csp6I | GTAC | 2 cut(s) | 333, 526 |
| CviAII | CATG | 2 cut(s) | 163, 383 |
| CviJI | RGCY | 8 cut(s) | 86, 140, 189, 275, 299, 392, 422, 504 |
| CviKI_1 | RGCY | 8 cut(s) | 86, 140, 189, 275, 299, 392, 422, 504 |
| CviQI | GTAC | 2 cut(s) | 333, 526 |
| DdeI | CTNAG | 1 cut(s) | 403 |
| DpnI | GATC | 3 cut(s) | 62, 96, 196 |
| DpnII | GATC | 3 cut(s) | 60, 94, 194 |
| Eco130I | CCWWGG | 1 cut(s) | 113 |
| Eco147I | AGGCCT | 1 cut(s) | 504 |
| Eco57I | CTGAAG | 2 cut(s) | 245, 402 |
| EcoRI | GAATTC | 2 cut(s) | 280, 469 |
| EcoT14I | CCWWGG | 1 cut(s) | 113 |
| ErhI | CCWWGG | 1 cut(s) | 113 |
| FaeI | CATG | 2 cut(s) | 166, 386 |
| FaiI | YATR | 9 cut(s) | 15, 93, 164, 234, 267, 320, 384, 431, 545 |
| FaqI | GGGAC | 1 cut(s) | 495 |
| FatI | CATG | 2 cut(s) | 162, 382 |
| FauI | CCCGC | 1 cut(s) | 520 |
| FbaI | TGATCA | 1 cut(s) | 94 |
| Fnu4HI | GCNGC | 1 cut(s) | 84 |
| Fsp4HI | GCNGC | 1 cut(s) | 84 |
| FspBI | CTAG | 2 cut(s) | 108, 423 |
| FspI | TGCGCA | 1 cut(s) | 82 |
| GlaI | GCGC | 1 cut(s) | 82 |
| GluI | GCNGC | 1 cut(s) | 84 |
| GsaI | CCCAGC | 1 cut(s) | 303 |
| HaeIII | GGCC | 1 cut(s) | 504 |
| HgaI | GACGC | 1 cut(s) | 318 |
| HhaI | GCGC | 1 cut(s) | 83 |
| Hin1II | CATG | 2 cut(s) | 166, 386 |
| Hin6I | GCGC | 1 cut(s) | 81 |
| HinP1I | GCGC | 1 cut(s) | 81 |
| HincII | GTYRAC | 1 cut(s) | 447 |
| HindII | GTYRAC | 1 cut(s) | 447 |
| HinfI | GANTC | 3 cut(s) | 28, 220, 553 |
| HpaI | GTTAAC | 1 cut(s) | 447 |
| HphI | GGTGA | 1 cut(s) | 89 |
| Hpy166II | GTNNAC | 1 cut(s) | 447 |
| Hpy188I | TCNGA | 3 cut(s) | 151, 203, 225 |
| Hpy188III | TCNNGA | 3 cut(s) | 58, 67, 217 |
| Hpy8I | GTNNAC | 1 cut(s) | 447 |
| HpyAV | CCTTC | 3 cut(s) | 64, 450, 515 |
| HpyCH4III | ACNGT | 1 cut(s) | 525 |
| HpyCH4V | TGCA | 3 cut(s) | 254, 382, 452 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 374, 383 |
| HpyF3I | CTNAG | 1 cut(s) | 403 |
| Hsp92II | CATG | 2 cut(s) | 166, 386 |
| HspAI | GCGC | 1 cut(s) | 81 |
| Ksp22I | TGATCA | 1 cut(s) | 94 |
| KspAI | GTTAAC | 1 cut(s) | 447 |
| Kzo9I | GATC | 3 cut(s) | 60, 94, 194 |
| LmnI | GCTCC | 1 cut(s) | 241 |
| LpnPI | CCDG | 6 cut(s) | 43, 52, 159, 285, 315, 373 |
| Lsp1109I | GCAGC | 1 cut(s) | 95 |
| MaeI | CTAG | 2 cut(s) | 108, 423 |
| MalI | GATC | 3 cut(s) | 62, 96, 196 |
| MboI | GATC | 3 cut(s) | 60, 94, 194 |
| MboII | GAAGA | 1 cut(s) | 201 |
| MluCI | AATT | 6 cut(s) | 123, 262, 280, 336, 469, 533 |
| MlyI | GAGTC | 1 cut(s) | 229 |
| MmeI | TCCRAC | 1 cut(s) | 20 |
| MnlI | CCTC | 1 cut(s) | 400 |
| MroXI | GAANNNNTTC | 1 cut(s) | 208 |
| MseI | TTAA | 4 cut(s) | 342, 354, 446, 559 |
| MspA1I | CMGCKG | 1 cut(s) | 86 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 374, 383 |
| NdeII | GATC | 3 cut(s) | 60, 94, 194 |
| NlaIII | CATG | 2 cut(s) | 166, 386 |
| NsbI | TGCGCA | 1 cut(s) | 82 |
| NspI | RCATGY | 2 cut(s) | 166, 386 |
| PaeI | GCATGC | 2 cut(s) | 166, 386 |
| PceI | AGGCCT | 1 cut(s) | 504 |
| PdmI | GAANNNNTTC | 1 cut(s) | 208 |
| PfeI | GAWTC | 1 cut(s) | 28 |
| PkrI | GCNGC | 1 cut(s) | 85 |
| PleI | GAGTC | 1 cut(s) | 228 |
| PpsI | GAGTC | 1 cut(s) | 228 |
| PshBI | ATTAAT | 1 cut(s) | 342 |
| PspFI | CCCAGC | 1 cut(s) | 299 |
| PvuII | CAGCTG | 1 cut(s) | 86 |
| RsaI | GTAC | 2 cut(s) | 334, 527 |
| RsaNI | GTAC | 2 cut(s) | 333, 526 |
| SaqAI | TTAA | 4 cut(s) | 342, 354, 446, 559 |
| SatI | GCNGC | 1 cut(s) | 84 |
| Sau3AI | GATC | 3 cut(s) | 60, 94, 194 |
| SchI | GAGTC | 1 cut(s) | 229 |
| SetI | ASST | 8 cut(s) | 80, 88, 109, 142, 301, 362, 394, 424 |
| SphI | GCATGC | 2 cut(s) | 166, 386 |
| Sse9I | AATT | 6 cut(s) | 123, 262, 280, 336, 469, 533 |
| SseBI | AGGCCT | 1 cut(s) | 504 |
| SsiI | CCGC | 2 cut(s) | 386, 513 |
| SspI | AATATT | 1 cut(s) | 155 |
| SspMI | CTAG | 2 cut(s) | 108, 423 |
| StuI | AGGCCT | 1 cut(s) | 504 |
| StyI | CCWWGG | 1 cut(s) | 113 |
| TaaI | ACNGT | 1 cut(s) | 525 |
| TaqI | TCGA | 2 cut(s) | 216, 467 |
| TasI | AATT | 6 cut(s) | 123, 262, 280, 336, 469, 533 |
| TatI | WGTACW | 1 cut(s) | 525 |
| TfiI | GAWTC | 1 cut(s) | 28 |
| Tru1I | TTAA | 4 cut(s) | 342, 354, 446, 559 |
| Tru9I | TTAA | 4 cut(s) | 342, 354, 446, 559 |
| TseI | GCWGC | 1 cut(s) | 83 |
| TspDTI | ATGAA | 3 cut(s) | 17, 168, 560 |
| VspI | ATTAAT | 1 cut(s) | 342 |
| XapI | RAATTY | 3 cut(s) | 280, 469, 533 |
| XceI | RCATGY | 2 cut(s) | 166, 386 |
| XmnI | GAANNNNTTC | 1 cut(s) | 208 |
| XspI | CTAG | 2 cut(s) | 108, 423 |