FvH4_3g24291

Ubiquitin-binding WIYLD domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000093
Physical Location & Seq
Forward (+)
17312708 .. 17313142
435 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g24291.t1

Sequence Viewer

Length: 435 bp
ATGGGAATCGGAGTAGTGGCGCGAGACTCAGAGGGTCGTCTCGTTGGTGGCTCCTCCAAGTCTGGTTTAGCAGCATCTGCGCTTAAGGCAGAGGCCATGGCGGCATCATCAGCGAAGGAGCTCGCAAAAAAACTCCGGTTCCAATCAGTCATCTTCGAATCAGATTCACAAAACTTGGTTGATGCGATTAATGGTTCGAAGACTTCACCACATTGGAGCCTCATTCCCACAATCAATCGGATCAGCCATGACTCTTGTTTCTTCAGAACCTTCTCATGGAGGTTGACTCCCCATCAAGCGAACTCGGCAGCCGATCATGTTGCCTCGCTATCCTTAAGGAAGATGTGCCCTGAATCTTGGGTTATTCGACTCCCATCTTCCTTGGTCCATATTCTATCGAGGGATGGTCTTCCTTGTCCTCCGGCAGCATCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WIYLD

Protein Analysis

145

Amino Acids

15.4

Weight (kDa)

9.5

Isoelectric Point (pI)

48.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 2 - 109 1.7e-15 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000093)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G09490
fragaria_vesca FvH4_1g23791 FvH4_2g01641 FvH4_2g04612 FvH4_2g06831 FvH4_2g07841 FvH4_2g13581 FvH4_2g27220 FvH4_2g30621 FvH4_2g34753 FvH4_3g10392 FvH4_3g24291 FvH4_3g25030 FvH4_3g29361 FvH4_3g31372 FvH4_3g32402 FvH4_3g43651 FvH4_4g03830 FvH4_4g05481 FvH4_4g20431 FvH4_4g21421 FvH4_4g25931 FvH4_5g08801 FvH4_5g21021 FvH4_5g26254 FvH4_5g30931 FvH4_5g31281 FvH4_5g33581 FvH4_5g35622 FvH4_6g02100 FvH4_6g07963 FvH4_6g11620 FvH4_6g16031 FvH4_6g19041 FvH4_6g24211 FvH4_6g24271 FvH4_6g30670 FvH4_6g49540 FvH4_7g25914
malus_domestica MD03G1245200.v1.1 MD04G1168000.v1.1 MD09G1242600.v1.1 MD15G1334000.v1.1 MD17G1165700.v1.1
prunus_persica Prupe.1G073500_v2.0.a1 Prupe.1G283700_v2.0.a1 Prupe.1G524100_v2.0.a1 Prupe.2G022700_v2.0.a1 Prupe.2G022800_v2.0.a1 Prupe.2G022800_v2.0.a1 Prupe.2G044300_v2.0.a1 Prupe.2G048800_v2.0.a1 Prupe.2G092000_v2.0.a1 Prupe.2G216500_v2.0.a1 Prupe.2G216600_v2.0.a1 Prupe.2G216600_v2.0.a1 Prupe.3G103400_v2.0.a1 Prupe.3G143300_v2.0.a1 Prupe.3G190000_v2.0.a1 Prupe.3G219800_v2.0.a1 Prupe.4G177800_v2.0.a1 Prupe.4G261300_v2.0.a1 Prupe.5G044600_v2.0.a1 Prupe.5G067400_v2.0.a1 Prupe.7G083900_v2.0.a1 Prupe.7G120900_v2.0.a1 Prupe.8G032200_v2.0.a1 Prupe.8G036100_v2.0.a1 Prupe.8G042700_v2.0.a1
pyrus_communis pycom01g21710 pycom02g19770 pycom03g05120 pycom05g01370 pycom05g08780 pycom05g10120 pycom07g01370 pycom07g05930 pycom08g15760 pycom08g18090 pycom08g21060 pycom09g03880 pycom10g03870 pycom13g22240 pycom16g05120 pycom16g17170 pycom17g12180 pycom17g16290 pycom17g21230 pycom17g24990 pycom215g00100
rosa_chinensis RchiOBHm_Chr1g0323031 RchiOBHm_Chr1g0324391 RchiOBHm_Chr1g0326401 RchiOBHm_Chr1g0327811 RchiOBHm_Chr1g0332521 RchiOBHm_Chr1g0336501 RchiOBHm_Chr1g0346021 RchiOBHm_Chr1g0347191 RchiOBHm_Chr1g0367181 RchiOBHm_Chr2g0089441 RchiOBHm_Chr2g0115441 RchiOBHm_Chr3g0490691 RchiOBHm_Chr4g0395251 RchiOBHm_Chr4g0398081 RchiOBHm_Chr4g0409451 RchiOBHm_Chr4g0413041 RchiOBHm_Chr4g0415471 RchiOBHm_Chr4g0420961 RchiOBHm_Chr5g0040301 RchiOBHm_Chr5g0070651 RchiOBHm_Chr6g0263011 RchiOBHm_Chr6g0270721 RchiOBHm_Chr6g0277111 RchiOBHm_Chr7g0179771 RchiOBHm_Chr7g0223051 RchiOBHm_Chr7g0225031 RchiOBHm_Chr7g0225091
rosa_laevigata RLG00000001668 RLG00000001672 RLG00000001676 RLG00000007762 RLG00000008994 RLG00000011117 RLG00000013729 RLG00000013839 RLG00000014759 RLG00000016638 RLG00000018535 RLG00000018614 RLG00000018646 RLG00000020679 RLG00000023337 RLG00000029348 RLG00000035891 RLG00000035912
rosa_multiflora Rmu_co8152500.1_g000001 Rmu_co8203314.1_g000001 Rmu_co8383183.1_g000001 Rmu_sc0000293.1_g000033 Rmu_sc0000367.1_g000226 Rmu_sc0000512.1_g000023 Rmu_sc0000594.1_g000059 Rmu_sc0000654.1_g000022 Rmu_sc0000654.1_g000047 Rmu_sc0000706.1_g000037 Rmu_sc0001348.1_g000008 Rmu_sc0001385.1_g000024 Rmu_sc0001405.1_g000002 Rmu_sc0001521.1_g000048 Rmu_sc0001932.1_g000008 Rmu_sc0001932.1_g000009 Rmu_sc0002535.1_g000011 Rmu_sc0002908.1_g000019 Rmu_sc0003709.1_g000004 Rmu_sc0003882.1_g000054 Rmu_sc0004035.1_g000007 Rmu_sc0004041.1_g000007 Rmu_sc0004288.1_g000011 Rmu_sc0004569.1_g000004 Rmu_sc0004677.1_g000016 Rmu_sc0004834.1_g000010 Rmu_sc0005193.1_g000008 Rmu_sc0005354.1_g000009 Rmu_sc0006514.1_g000021 Rmu_sc0006691.1_g000001 Rmu_sc0006888.1_g000021 Rmu_sc0006889.1_g000013 Rmu_sc0008096.1_g000017 Rmu_sc0008378.1_g000003 Rmu_sc0009127.1_g000005 Rmu_sc0009191.1_g000016 Rmu_sc0009687.1_g000018 Rmu_sc0009709.1_g000005 Rmu_sc0009880.1_g000015 Rmu_sc0011710.1_g000001 Rmu_sc0012615.1_g000004 Rmu_sc0016091.1_g000002 Rmu_sc0022339.1_g000006 Rmu_sc0026537.1_g000002 Rmu_sc0027689.1_g000002 Rmu_sc0036222.1_g000001 Rmu_sc0040890.1_g000001 Rmu_ssc0000148.1_g000006 Rmu_ssc0000151.1_g000017 Rmu_ssc0000404.1_g000018 Rmu_ssc0000449.1_g000009
rosa_roxburghii Rroxscaffold_1G00017760 Rroxscaffold_1G00059150 Rroxscaffold_2G00142560 Rroxscaffold_3G00220440 Rroxscaffold_3G00231700 Rroxscaffold_3G00232400 Rroxscaffold_3G00274510 Rroxscaffold_4G00288790 Rroxscaffold_4G00305680 Rroxscaffold_4G00314880 Rroxscaffold_4G00314900 Rroxscaffold_5G00334590 Rroxscaffold_6G00394110 Rroxscaffold_6G00415860 Rroxscaffold_7G00168240 Rroxscaffold_7G00204400 Rroxscaffold_7G00207840
rosa_rugosa Rorug01G0034900 Rorug02G0079500 Rorug02G0229000 Rorug02G0229100 Rorug02G0291400 Rorug02G0298800 Rorug03G0046400 Rorug03G0064700 Rorug03G0077300 Rorug03G0199000 Rorug03G0200400 Rorug04G0205200 Rorug05G0025400 Rorug05G0127400 Rorug05G0192100 Rorug05G0453400 Rorug05G0538300 Rorug06G0035200 Rorug06G0241000 Rorug06G0268300 Rorug07G0120300 Rorug07G0145000 Rorug07G0209100 Rorug07G0240500 Rorug07G0271700
rosa_samantha Rh1AG179100 Rh1BG106900 Rh1BG163400 Rh1BG163500 Rh1BG323500 Rh2CG447900 Rh2DG503700 Rh3AG293600 Rh3CG229100 Rh3DG221500 Rh4AG106000 Rh4BG267700 Rh4CG062500 Rh4CG090100 Rh4CG114800 Rh5AG038400 Rh5BG395400 Rh5CG441700 Rh5CG572000 Rh6AG222400 Rh6AG264500 Rh6BG137400 Rh6BG225700 Rh6CG144300 Rh6DG087600 Rh6DG096000 Rh6DG362400 Rh6DG390200 Rh7AG207500 Rh7AG324700 Rh7AG388800 Rh7AG437100 Rh7BG019000 Rh7BG374600 Rh7CG028700 Rh7CG341500 Rh7CG408000 Rh7CG408300 Rh7DG354600
rosa_wichuraiana Rw0G009630 Rw0G012170 Rw4G022700 Rw5G028420 Rw5G029490 Rw6G007220 Rw6G007410 Rw6G017880 Rw7G012440 Rw7G021830 Rw7G027490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 22
AciI CCGC 1 cut(s) 101
AclWI GGATC 1 cut(s) 248
AcuI CTGAAG 1 cut(s) 247
AfiI CCNNNNNNNGG 1 cut(s) 276
AflII CTTAAG 2 cut(s) 83, 334
AluBI AGCT 1 cut(s) 121
AluI AGCT 1 cut(s) 121
Alw21I GWGCWC 1 cut(s) 123
Alw26I GTCTC 2 cut(s) 18, 44
AlwI GGATC 1 cut(s) 248
AlwNI CAGNNNCTG 1 cut(s) 77
AoxI GGCC 1 cut(s) 93
ApeKI GCWGC 3 cut(s) 71, 308, 425
AseI ATTAAT 1 cut(s) 189
AspLEI GCGC 2 cut(s) 22, 82
AspS9I GGNCC 1 cut(s) 385
AsuHPI GGTGA 1 cut(s) 198
AsuII TTCGAA 2 cut(s) 156, 197
AvaII GGWCC 1 cut(s) 385
BaeGI GKGCMC 1 cut(s) 350
BanII GRGCYC 1 cut(s) 123
BbsI GAAGAC 2 cut(s) 206, 401
Bbv12I GWGCWC 1 cut(s) 123
BbvI GCAGC 2 cut(s) 83, 320
BccI CCATC 3 cut(s) 300, 382, 398
BcgI CGANNNNNNTGC 2 cut(s) 302, 336
BcoDI GTCTC 2 cut(s) 18, 44
BfrI CTTAAG 2 cut(s) 83, 334
BglI GCCNNNNNGGC 1 cut(s) 101
BisI GCNGC 4 cut(s) 72, 102, 309, 426
BlsI GCNGC 4 cut(s) 73, 103, 310, 427
Bme18I GGWCC 1 cut(s) 385
BmgT120I GGNCC 1 cut(s) 385
BmiI GGNNCC 3 cut(s) 52, 140, 218
BmsI GCATC 3 cut(s) 83, 113, 172
BpiI GAAGAC 2 cut(s) 206, 401
BplI GAGNNNNNCTC 2 cut(s) 271, 303
Bpu14I TTCGAA 2 cut(s) 156, 197
BsaJI CCNNGG 2 cut(s) 96, 381
BsaWI WCCGGW 1 cut(s) 135
Bsc4I CCNNNNNNNGG 1 cut(s) 276
BseDI CCNNGG 2 cut(s) 96, 381
BseGI GGATG 1 cut(s) 409
BseLI CCNNNNNNNGG 1 cut(s) 276
BseMII CTCAG 1 cut(s) 42
BseRI GAGGAG 1 cut(s) 43
BseSI GKGCMC 1 cut(s) 350
BseXI GCAGC 2 cut(s) 83, 320
Bsh1236I CGCG 1 cut(s) 22
BshFI GGCC 1 cut(s) 95
BsiHKAI GWGCWC 1 cut(s) 123
BsiSI CCGG 2 cut(s) 136, 422
BslI CCNNNNNNNGG 1 cut(s) 276
BsmAI GTCTC 2 cut(s) 18, 44
BsmBI CGTCTC 1 cut(s) 44
BsnI GGCC 1 cut(s) 95
Bsp119I TTCGAA 2 cut(s) 156, 197
Bsp1286I GDGCHC 2 cut(s) 123, 350
Bsp143I GATC 2 cut(s) 240, 313
Bsp19I CCATGG 1 cut(s) 96
BspACI CCGC 1 cut(s) 101
BspANI GGCC 1 cut(s) 95
BspCNI CTCAG 1 cut(s) 41
BspFNI CGCG 1 cut(s) 22
BspHI TCATGA 1 cut(s) 431
BspLI GGNNCC 3 cut(s) 52, 140, 218
BspPI GGATC 1 cut(s) 248
BspT104I TTCGAA 2 cut(s) 156, 197
BspTI CTTAAG 2 cut(s) 83, 334
BssECI CCNNGG 2 cut(s) 96, 381
BssMI GATC 2 cut(s) 240, 313
BssT1I CCWWGG 2 cut(s) 96, 381
BstAFI CTTAAG 2 cut(s) 83, 334
BstAPI GCANNNNNTGC 1 cut(s) 77
BstBI TTCGAA 2 cut(s) 156, 197
BstC8I GCNNGC 1 cut(s) 123
BstDEI CTNAG 1 cut(s) 28
BstDSI CCRYGG 1 cut(s) 96
BstF5I GGATG 1 cut(s) 409
BstFNI CGCG 1 cut(s) 22
BstHHI GCGC 2 cut(s) 22, 82
BstKTI GATC 2 cut(s) 243, 316
BstMAI GTCTC 2 cut(s) 18, 44
BstMBI GATC 2 cut(s) 240, 313
BstMWI GCNNNNNNNGC 5 cut(s) 77, 86, 101, 110, 305
BstSLI GKGCMC 1 cut(s) 350
BstUI CGCG 1 cut(s) 22
BstV1I GCAGC 2 cut(s) 83, 320
BstV2I GAAGAC 2 cut(s) 206, 401
BsuRI GGCC 1 cut(s) 95
BtgI CCRYGG 1 cut(s) 96
BtsCI GGATG 1 cut(s) 409
Cac8I GCNNGC 1 cut(s) 123
CaiI CAGNNNCTG 1 cut(s) 77
CciI TCATGA 1 cut(s) 431
CfoI GCGC 2 cut(s) 22, 82
Cfr13I GGNCC 1 cut(s) 385
CviAII CATG 5 cut(s) 97, 248, 276, 317, 432
CviJI RGCY 6 cut(s) 51, 95, 121, 219, 246, 311
CviKI_1 RGCY 6 cut(s) 51, 95, 121, 219, 246, 311
DdeI CTNAG 1 cut(s) 28
DpnI GATC 2 cut(s) 242, 315
DpnII GATC 2 cut(s) 240, 313
Ecl136II GAGCTC 1 cut(s) 121
Eco130I CCWWGG 2 cut(s) 96, 381
Eco24I GRGCYC 1 cut(s) 123
Eco47I GGWCC 1 cut(s) 385
Eco53kI GAGCTC 1 cut(s) 121
Eco57I CTGAAG 1 cut(s) 247
EcoICRI GAGCTC 1 cut(s) 121
EcoT14I CCWWGG 2 cut(s) 96, 381
EcoT38I GRGCYC 1 cut(s) 123
ErhI CCWWGG 2 cut(s) 96, 381
Esp3I CGTCTC 1 cut(s) 44
FaeI CATG 5 cut(s) 100, 251, 279, 320, 435
FaiI YATR 6 cut(s) 98, 249, 277, 318, 390, 433
FatI CATG 5 cut(s) 96, 247, 275, 316, 431
Fnu4HI GCNGC 4 cut(s) 72, 102, 309, 426
FokI GGATG 1 cut(s) 416
FriOI GRGCYC 1 cut(s) 123
Fsp4HI GCNGC 4 cut(s) 72, 102, 309, 426
GlaI GCGC 2 cut(s) 21, 81
GluI GCNGC 4 cut(s) 72, 102, 309, 426
HaeIII GGCC 1 cut(s) 95
HapII CCGG 2 cut(s) 136, 422
HhaI GCGC 2 cut(s) 22, 82
Hin1II CATG 5 cut(s) 100, 251, 279, 320, 435
Hin6I GCGC 2 cut(s) 20, 80
HinP1I GCGC 2 cut(s) 20, 80
HincII GTYRAC 1 cut(s) 285
HindII GTYRAC 1 cut(s) 285
HinfI GANTC 8 cut(s) 6, 26, 158, 164, 251, 286, 353, 369
HpaII CCGG 2 cut(s) 136, 422
HphI GGTGA 1 cut(s) 198
Hpy166II GTNNAC 1 cut(s) 285
Hpy188I TCNGA 5 cut(s) 11, 31, 163, 240, 266
Hpy188III TCNNGA 1 cut(s) 432
Hpy8I GTNNAC 1 cut(s) 285
HpyAV CCTTC 2 cut(s) 109, 280
HpyF10VI GCNNNNNNNGC 5 cut(s) 77, 86, 101, 110, 305
HpyF3I CTNAG 1 cut(s) 28
Hsp92II CATG 5 cut(s) 100, 251, 279, 320, 435
HspAI GCGC 2 cut(s) 20, 80
Kzo9I GATC 2 cut(s) 240, 313
LmnI GCTCC 3 cut(s) 56, 118, 216
LpnPI CCDG 3 cut(s) 48, 149, 363
Lsp1109I GCAGC 2 cut(s) 83, 320
LweI GCATC 3 cut(s) 83, 113, 172
MalI GATC 2 cut(s) 242, 315
MboI GATC 2 cut(s) 240, 313
MboII GAAGA 6 cut(s) 145, 211, 253, 352, 369, 401
MhlI GDGCHC 2 cut(s) 123, 350
MlyI GAGTC 4 cut(s) 20, 245, 280, 363
MnlI CCTC 8 cut(s) 25, 64, 85, 230, 273, 334, 393, 429
MseI TTAA 3 cut(s) 84, 189, 335
MspCI CTTAAG 2 cut(s) 83, 334
MspI CCGG 2 cut(s) 136, 422
MvnI CGCG 1 cut(s) 22
MwoI GCNNNNNNNGC 5 cut(s) 77, 86, 101, 110, 305
NcoI CCATGG 1 cut(s) 96
NdeII GATC 2 cut(s) 240, 313
NlaIII CATG 5 cut(s) 100, 251, 279, 320, 435
NlaIV GGNNCC 3 cut(s) 52, 140, 218
NmeAIII GCCGAG 1 cut(s) 284
NspV TTCGAA 2 cut(s) 156, 197
PagI TCATGA 1 cut(s) 431
PfeI GAWTC 4 cut(s) 6, 158, 164, 353
PkrI GCNGC 4 cut(s) 73, 103, 310, 427
PleI GAGTC 4 cut(s) 20, 245, 280, 363
PpsI GAGTC 4 cut(s) 20, 245, 280, 363
PshBI ATTAAT 1 cut(s) 189
Psp124BI GAGCTC 1 cut(s) 123
PspN4I GGNNCC 3 cut(s) 52, 140, 218
PspPI GGNCC 1 cut(s) 385
PstNI CAGNNNCTG 1 cut(s) 77
SacI GAGCTC 1 cut(s) 123
SaqAI TTAA 3 cut(s) 84, 189, 335
SatI GCNGC 4 cut(s) 72, 102, 309, 426
Sau3AI GATC 2 cut(s) 240, 313
Sau96I GGNCC 1 cut(s) 385
SchI GAGTC 4 cut(s) 20, 245, 280, 363
SduI GDGCHC 2 cut(s) 123, 350
SetI ASST 3 cut(s) 123, 272, 284
SfaNI GCATC 3 cut(s) 83, 113, 172
SfuI TTCGAA 2 cut(s) 156, 197
SinI GGWCC 1 cut(s) 385
SmlI CTYRAG 2 cut(s) 83, 334
SmoI CTYRAG 2 cut(s) 83, 334
SsiI CCGC 1 cut(s) 101
SstI GAGCTC 1 cut(s) 123
StyI CCWWGG 2 cut(s) 96, 381
TaqI TCGA 4 cut(s) 156, 197, 367, 398
TauI GCSGC 1 cut(s) 104
TfiI GAWTC 4 cut(s) 6, 158, 164, 353
Tru1I TTAA 3 cut(s) 84, 189, 335
Tru9I TTAA 3 cut(s) 84, 189, 335
TseI GCWGC 3 cut(s) 71, 308, 425
Vha464I CTTAAG 2 cut(s) 83, 334
VpaK11BI GGWCC 1 cut(s) 385
VspI ATTAAT 1 cut(s) 189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.