ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| zf-RVT | PF13966 | 4 - 39 | 6.1e-06 | zinc-binding in reverse transcriptase |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 358 |
| AccII | CGCG | 1 cut(s) | 564 |
| AciI | CCGC | 3 cut(s) | 5, 350, 564 |
| AcoI | YGGCCR | 1 cut(s) | 167 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 520 |
| AgsI | TTSAA | 1 cut(s) | 611 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 164, 196, 241, 273 |
| AloI | GAACNNNNNNTCC | 1 cut(s) | 617 |
| AluBI | AGCT | 1 cut(s) | 296 |
| AluI | AGCT | 1 cut(s) | 296 |
| Alw21I | GWGCWC | 1 cut(s) | 81 |
| AoxI | GGCC | 6 cut(s) | 6, 167, 195, 317, 378, 522 |
| ApeKI | GCWGC | 2 cut(s) | 352, 440 |
| AspS9I | GGNCC | 5 cut(s) | 7, 195, 318, 379, 523 |
| AsuC2I | CCSGG | 1 cut(s) | 194 |
| AsuHPI | GGTGA | 2 cut(s) | 27, 484 |
| AsuII | TTCGAA | 1 cut(s) | 209 |
| Bbv12I | GWGCWC | 1 cut(s) | 81 |
| BbvI | GCAGC | 2 cut(s) | 364, 427 |
| BccI | CCATC | 4 cut(s) | 262, 378, 446, 469 |
| BclI | TGATCA | 1 cut(s) | 202 |
| BcnI | CCSGG | 1 cut(s) | 194 |
| BfaI | CTAG | 1 cut(s) | 504 |
| BisI | GCNGC | 4 cut(s) | 6, 350, 353, 441 |
| BlsI | GCNGC | 4 cut(s) | 7, 351, 354, 442 |
| Bme1390I | CCNGG | 1 cut(s) | 194 |
| BmgT120I | GGNCC | 5 cut(s) | 7, 195, 318, 379, 523 |
| BmiI | GGNNCC | 2 cut(s) | 512, 525 |
| BmrFI | CCNGG | 1 cut(s) | 194 |
| BmsI | GCATC | 2 cut(s) | 381, 415 |
| Bpu14I | TTCGAA | 1 cut(s) | 209 |
| BpuMI | CCSGG | 1 cut(s) | 194 |
| BsaJI | CCNNGG | 2 cut(s) | 98, 321 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 520 |
| Bse1I | ACTGG | 1 cut(s) | 429 |
| BseDI | CCNNGG | 2 cut(s) | 98, 321 |
| BseGI | GGATG | 1 cut(s) | 189 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 520 |
| BseMII | CTCAG | 1 cut(s) | 74 |
| BseNI | ACTGG | 1 cut(s) | 429 |
| BseRI | GAGGAG | 2 cut(s) | 22, 80 |
| BseXI | GCAGC | 2 cut(s) | 364, 427 |
| Bsh1236I | CGCG | 1 cut(s) | 564 |
| BshFI | GGCC | 6 cut(s) | 8, 169, 197, 319, 380, 524 |
| BsiHKAI | GWGCWC | 1 cut(s) | 81 |
| BsiSI | CCGG | 1 cut(s) | 193 |
| BslFI | GGGAC | 1 cut(s) | 30 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 520 |
| BsmFI | GGGAC | 1 cut(s) | 30 |
| BsmI | GAATGC | 1 cut(s) | 22 |
| BsnI | GGCC | 6 cut(s) | 8, 169, 197, 319, 380, 524 |
| Bsp119I | TTCGAA | 1 cut(s) | 209 |
| Bsp1286I | GDGCHC | 1 cut(s) | 81 |
| Bsp143I | GATC | 1 cut(s) | 202 |
| Bsp19I | CCATGG | 1 cut(s) | 98 |
| BspACI | CCGC | 3 cut(s) | 5, 350, 564 |
| BspANI | GGCC | 6 cut(s) | 8, 169, 197, 319, 380, 524 |
| BspCNI | CTCAG | 1 cut(s) | 73 |
| BspFNI | CGCG | 1 cut(s) | 564 |
| BspLI | GGNNCC | 2 cut(s) | 512, 525 |
| BspT104I | TTCGAA | 1 cut(s) | 209 |
| BsrI | ACTGG | 1 cut(s) | 429 |
| BssECI | CCNNGG | 2 cut(s) | 98, 321 |
| BssMI | GATC | 1 cut(s) | 202 |
| BssT1I | CCWWGG | 1 cut(s) | 98 |
| BstBI | TTCGAA | 1 cut(s) | 209 |
| BstC8I | GCNNGC | 2 cut(s) | 264, 378 |
| BstDEI | CTNAG | 2 cut(s) | 60, 593 |
| BstDSI | CCRYGG | 1 cut(s) | 98 |
| BstF5I | GGATG | 1 cut(s) | 189 |
| BstFNI | CGCG | 1 cut(s) | 564 |
| BstKTI | GATC | 1 cut(s) | 205 |
| BstMBI | GATC | 1 cut(s) | 202 |
| BstSCI | CCNGG | 1 cut(s) | 192 |
| BstUI | CGCG | 1 cut(s) | 564 |
| BstV1I | GCAGC | 2 cut(s) | 364, 427 |
| BsuRI | GGCC | 6 cut(s) | 8, 169, 197, 319, 380, 524 |
| BtgI | CCRYGG | 1 cut(s) | 98 |
| BtgZI | GCGATG | 1 cut(s) | 281 |
| BtsCI | GGATG | 1 cut(s) | 189 |
| Cac8I | GCNNGC | 2 cut(s) | 264, 378 |
| Cfr13I | GGNCC | 5 cut(s) | 7, 195, 318, 379, 523 |
| CseI | GACGC | 1 cut(s) | 344 |
| CviAII | CATG | 3 cut(s) | 99, 396, 449 |
| DdeI | CTNAG | 2 cut(s) | 60, 593 |
| DpnI | GATC | 1 cut(s) | 204 |
| DpnII | GATC | 1 cut(s) | 202 |
| DraI | TTTAAA | 1 cut(s) | 132 |
| EaeI | YGGCCR | 1 cut(s) | 167 |
| Eco130I | CCWWGG | 1 cut(s) | 98 |
| EcoO109I | RGGNCCY | 2 cut(s) | 318, 523 |
| EcoT14I | CCWWGG | 1 cut(s) | 98 |
| ErhI | CCWWGG | 1 cut(s) | 98 |
| FaeI | CATG | 3 cut(s) | 102, 399, 452 |
| FaiI | YATR | 9 cut(s) | 100, 138, 397, 406, 408, 450, 531, 600, 643 |
| FaqI | GGGAC | 1 cut(s) | 30 |
| FatI | CATG | 3 cut(s) | 98, 395, 448 |
| FauNDI | CATATG | 1 cut(s) | 406 |
| FbaI | TGATCA | 1 cut(s) | 202 |
| FblI | GTMKAC | 1 cut(s) | 358 |
| Fnu4HI | GCNGC | 4 cut(s) | 6, 350, 353, 441 |
| FokI | GGATG | 1 cut(s) | 176 |
| Fsp4HI | GCNGC | 4 cut(s) | 6, 350, 353, 441 |
| FspBI | CTAG | 1 cut(s) | 504 |
| GluI | GCNGC | 4 cut(s) | 6, 350, 353, 441 |
| HaeIII | GGCC | 6 cut(s) | 8, 169, 197, 319, 380, 524 |
| HapII | CCGG | 1 cut(s) | 193 |
| HgaI | GACGC | 1 cut(s) | 344 |
| Hin1II | CATG | 3 cut(s) | 102, 399, 452 |
| HincII | GTYRAC | 1 cut(s) | 359 |
| HindII | GTYRAC | 1 cut(s) | 359 |
| HinfI | GANTC | 4 cut(s) | 229, 334, 611, 617 |
| HpaII | CCGG | 1 cut(s) | 193 |
| HphI | GGTGA | 2 cut(s) | 27, 484 |
| Hpy166II | GTNNAC | 1 cut(s) | 359 |
| Hpy188I | TCNGA | 3 cut(s) | 234, 325, 616 |
| Hpy8I | GTNNAC | 1 cut(s) | 359 |
| Hpy99I | CGWCG | 1 cut(s) | 360 |
| HpyAV | CCTTC | 4 cut(s) | 92, 267, 501, 538 |
| HpyCH4V | TGCA | 1 cut(s) | 376 |
| HpyF3I | CTNAG | 2 cut(s) | 60, 593 |
| Hsp92II | CATG | 3 cut(s) | 102, 399, 452 |
| Ksp22I | TGATCA | 1 cut(s) | 202 |
| Kzo9I | GATC | 1 cut(s) | 202 |
| Lsp1109I | GCAGC | 2 cut(s) | 364, 427 |
| LweI | GCATC | 2 cut(s) | 381, 415 |
| MaeI | CTAG | 1 cut(s) | 504 |
| MaeIII | GTNAC | 1 cut(s) | 578 |
| MalI | GATC | 1 cut(s) | 204 |
| MboI | GATC | 1 cut(s) | 202 |
| MboII | GAAGA | 2 cut(s) | 77, 551 |
| MhlI | GDGCHC | 1 cut(s) | 81 |
| MluCI | AATT | 5 cut(s) | 156, 172, 249, 276, 555 |
| MmeI | TCCRAC | 1 cut(s) | 560 |
| MnlI | CCTC | 9 cut(s) | 20, 40, 43, 101, 298, 331, 372, 454, 631 |
| MseI | TTAA | 4 cut(s) | 131, 144, 243, 411 |
| MspI | CCGG | 1 cut(s) | 193 |
| MspR9I | CCNGG | 1 cut(s) | 194 |
| Mva1269I | GAATGC | 1 cut(s) | 22 |
| MvnI | CGCG | 1 cut(s) | 564 |
| NciI | CCSGG | 1 cut(s) | 194 |
| NcoI | CCATGG | 1 cut(s) | 98 |
| NdeI | CATATG | 1 cut(s) | 406 |
| NdeII | GATC | 1 cut(s) | 202 |
| NlaIII | CATG | 3 cut(s) | 102, 399, 452 |
| NlaIV | GGNNCC | 2 cut(s) | 512, 525 |
| NmuCI | GTSAC | 1 cut(s) | 578 |
| NspV | TTCGAA | 1 cut(s) | 209 |
| PctI | GAATGC | 1 cut(s) | 22 |
| PfeI | GAWTC | 4 cut(s) | 229, 334, 611, 617 |
| PkrI | GCNGC | 4 cut(s) | 7, 351, 354, 442 |
| PspN4I | GGNNCC | 2 cut(s) | 512, 525 |
| PspPI | GGNCC | 5 cut(s) | 7, 195, 318, 379, 523 |
| SalI | GTCGAC | 1 cut(s) | 357 |
| SaqAI | TTAA | 4 cut(s) | 131, 144, 243, 411 |
| SatI | GCNGC | 4 cut(s) | 6, 350, 353, 441 |
| Sau3AI | GATC | 1 cut(s) | 202 |
| Sau96I | GGNCC | 5 cut(s) | 7, 195, 318, 379, 523 |
| ScrFI | CCNGG | 1 cut(s) | 194 |
| SduI | GDGCHC | 1 cut(s) | 81 |
| SetI | ASST | 8 cut(s) | 32, 40, 84, 144, 291, 298, 364, 512 |
| SfaNI | GCATC | 2 cut(s) | 381, 415 |
| SfuI | TTCGAA | 1 cut(s) | 209 |
| Sse9I | AATT | 5 cut(s) | 156, 172, 249, 276, 555 |
| SsiI | CCGC | 3 cut(s) | 5, 350, 564 |
| SspMI | CTAG | 1 cut(s) | 504 |
| StyD4I | CCNGG | 1 cut(s) | 192 |
| StyI | CCWWGG | 1 cut(s) | 98 |
| TaqI | TCGA | 4 cut(s) | 26, 209, 358, 623 |
| TaqII | GACCGA | 1 cut(s) | 566 |
| TasI | AATT | 5 cut(s) | 156, 172, 249, 276, 555 |
| TauI | GCSGC | 2 cut(s) | 8, 352 |
| TfiI | GAWTC | 4 cut(s) | 229, 334, 611, 617 |
| Tru1I | TTAA | 4 cut(s) | 131, 144, 243, 411 |
| Tru9I | TTAA | 4 cut(s) | 131, 144, 243, 411 |
| TseFI | GTSAC | 1 cut(s) | 578 |
| TseI | GCWGC | 2 cut(s) | 352, 440 |
| Tsp45I | GTSAC | 1 cut(s) | 578 |
| TspDTI | ATGAA | 1 cut(s) | 479 |
| XmiI | GTMKAC | 1 cut(s) | 358 |
| XspI | CTAG | 1 cut(s) | 504 |