Rorug03G0199000

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000093
Physical Location & Seq
Forward (+)
17531866 .. 17533757
1892 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0199000.1

Sequence Viewer

Length: 1479 bp
ATGGCGCCGAAGCCTAAGAAAAGGGCTATTGCAAGTTGTGAGGGTGAAGGAGGAGGTTGTAGTGAGAGTAAGAGCATGATAGACAGGCTTAGTGATCTTCCGGATCAGGTTGCACATCACATTCTTTCGTTTCTAACTGTGATGGACCTGGTTCGAGTGTGTTGTGTGTCCAAAAGATGGAGAGAGCTTTCTCTGTCTGCCCCGTGTTTGAATTTTGATGAGATTCCGTCGGGTTGTAGATCCACATGCCGTAACCGGCTGCAGTTGATGACGTATTTGGAGAGGTACTTGTTTCATCGTGGGGGTAATAAGATACAGTCGTTTCTTGTCAATTGGGAGCGGCACTATATGGATGAAAATGAAACTGTGTGCATCTGTGCTAGCGAGCATTATCGACTCATCACATGGATCAATAGTGCGGTGAGGTGTAATGTTGAAGTGCTTGACCTTAAGATGACTCTGTATGATCCCGAGGAGGCACCGTTTCCGTCTAGCGTCTTTCTCTGTGGAACTTTGAGGTCCCTAGCAGTGGATATGAATTTTACTCTTCTTAGAACGCCCTCGTTTGGTTTTTCATCAAATCTCACTAAGTTGGAGTTAAAAGATGTTGTGATAGAGGACGACCGGTTTTTCAAATGGGTCTCATGTTCCTGCAAGTTCATTGAAGAGTTACATCTTGATCAAGTTCGTGGAATTATAACTATCAGTATTGAAAGCTCGTCTCTGAAAATATTGAGGTTTTTTGATGTGTTCAACACCTCCCATCTTAGCATATCAGGTGAGAAACTTGAAGACATAGTTGTGGGCTGGTATGTTGAATCACCTAGCAACAGTTCCTTAAATATTTGTGCCCCAAATCTTAGGTGTTTGAGTTGGAGTGGGAAATTGATGAATCACCTAACTCTGGGAAAGTTCAGACATTTAGAAGCTGCTGTGCTTCGTCTAAGGCCTGATGAAAATGAATTAGACAAAGTGTATGAGGTTCTTTGCAGTTTATGCAAAGTTAGAGCTCTTATGCTGGACGAAGCAACCATTAAGGTTCCATTCAGTAAAGGATCCATGCGAGCTCCAATATATAATATTCATTGTTTGACTATGGATATTGGAAGCATTACTGACGAGTTGGTTCCAGCAATAGTTTCTCTCTTCAGAGGATTGCCTAATATGTATATTCTTTGTATACAGTCTAAAACCCCTCTAGACAACCCTCAATCTAATACATCTGGGTTTGATATGGGATATTGGAAGTTGCAAAACCTTGCTTTTATAGATCAGCTGAAGGTGGTCAGCATAGAACTTTGCAATGACTCCAATGCAATTGATTTAGCAAGGTATATTCTTGAGTGCGCTCAGAATTTGCTGCAAATGATTGTTATTTATCCACCCCAGGATTCAGAGATAGTTACAAGGAAGTTAAAGGAAAGCAAGATAGCTTCTGGTGCCACAGTTGTCTTTCGTGAAAAAGAGAAAAGAGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

492

Amino Acids

55.84

Weight (kDa)

6.4

Isoelectric Point (pI)

48.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 30 - 65 1.7e-09 F-box-like
F-box PF00646 30 - 66 3.4e-09 F-box domain
LRR_At1g61320_AtMIF1 PF23622 124 - 257 5.8e-10 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 135 - 304 8.1e-12 FBD-associated F-box protein At5g56370, LRR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000093)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G09490
fragaria_vesca FvH4_1g23791 FvH4_2g01641 FvH4_2g04612 FvH4_2g06831 FvH4_2g07841 FvH4_2g13581 FvH4_2g27220 FvH4_2g30621 FvH4_2g34753 FvH4_3g10392 FvH4_3g24291 FvH4_3g25030 FvH4_3g29361 FvH4_3g31372 FvH4_3g32402 FvH4_3g43651 FvH4_4g03830 FvH4_4g05481 FvH4_4g20431 FvH4_4g21421 FvH4_4g25931 FvH4_5g08801 FvH4_5g21021 FvH4_5g26254 FvH4_5g30931 FvH4_5g31281 FvH4_5g33581 FvH4_5g35622 FvH4_6g02100 FvH4_6g07963 FvH4_6g11620 FvH4_6g16031 FvH4_6g19041 FvH4_6g24211 FvH4_6g24271 FvH4_6g30670 FvH4_6g49540 FvH4_7g25914
malus_domestica MD03G1245200.v1.1 MD04G1168000.v1.1 MD09G1242600.v1.1 MD15G1334000.v1.1 MD17G1165700.v1.1
prunus_persica Prupe.1G073500_v2.0.a1 Prupe.1G283700_v2.0.a1 Prupe.1G524100_v2.0.a1 Prupe.2G022700_v2.0.a1 Prupe.2G022800_v2.0.a1 Prupe.2G022800_v2.0.a1 Prupe.2G044300_v2.0.a1 Prupe.2G048800_v2.0.a1 Prupe.2G092000_v2.0.a1 Prupe.2G216500_v2.0.a1 Prupe.2G216600_v2.0.a1 Prupe.2G216600_v2.0.a1 Prupe.3G103400_v2.0.a1 Prupe.3G143300_v2.0.a1 Prupe.3G190000_v2.0.a1 Prupe.3G219800_v2.0.a1 Prupe.4G177800_v2.0.a1 Prupe.4G261300_v2.0.a1 Prupe.5G044600_v2.0.a1 Prupe.5G067400_v2.0.a1 Prupe.7G083900_v2.0.a1 Prupe.7G120900_v2.0.a1 Prupe.8G032200_v2.0.a1 Prupe.8G036100_v2.0.a1 Prupe.8G042700_v2.0.a1
pyrus_communis pycom01g21710 pycom02g19770 pycom03g05120 pycom05g01370 pycom05g08780 pycom05g10120 pycom07g01370 pycom07g05930 pycom08g15760 pycom08g18090 pycom08g21060 pycom09g03880 pycom10g03870 pycom13g22240 pycom16g05120 pycom16g17170 pycom17g12180 pycom17g16290 pycom17g21230 pycom17g24990 pycom215g00100
rosa_chinensis RchiOBHm_Chr1g0323031 RchiOBHm_Chr1g0324391 RchiOBHm_Chr1g0326401 RchiOBHm_Chr1g0327811 RchiOBHm_Chr1g0332521 RchiOBHm_Chr1g0336501 RchiOBHm_Chr1g0346021 RchiOBHm_Chr1g0347191 RchiOBHm_Chr1g0367181 RchiOBHm_Chr2g0089441 RchiOBHm_Chr2g0115441 RchiOBHm_Chr3g0490691 RchiOBHm_Chr4g0395251 RchiOBHm_Chr4g0398081 RchiOBHm_Chr4g0409451 RchiOBHm_Chr4g0413041 RchiOBHm_Chr4g0415471 RchiOBHm_Chr4g0420961 RchiOBHm_Chr5g0040301 RchiOBHm_Chr5g0070651 RchiOBHm_Chr6g0263011 RchiOBHm_Chr6g0270721 RchiOBHm_Chr6g0277111 RchiOBHm_Chr7g0179771 RchiOBHm_Chr7g0223051 RchiOBHm_Chr7g0225031 RchiOBHm_Chr7g0225091
rosa_laevigata RLG00000001668 RLG00000001672 RLG00000001676 RLG00000007762 RLG00000008994 RLG00000011117 RLG00000013729 RLG00000013839 RLG00000014759 RLG00000016638 RLG00000018535 RLG00000018614 RLG00000018646 RLG00000020679 RLG00000023337 RLG00000029348 RLG00000035891 RLG00000035912
rosa_multiflora Rmu_co8152500.1_g000001 Rmu_co8203314.1_g000001 Rmu_co8383183.1_g000001 Rmu_sc0000293.1_g000033 Rmu_sc0000367.1_g000226 Rmu_sc0000512.1_g000023 Rmu_sc0000594.1_g000059 Rmu_sc0000654.1_g000022 Rmu_sc0000654.1_g000047 Rmu_sc0000706.1_g000037 Rmu_sc0001348.1_g000008 Rmu_sc0001385.1_g000024 Rmu_sc0001405.1_g000002 Rmu_sc0001521.1_g000048 Rmu_sc0001932.1_g000008 Rmu_sc0001932.1_g000009 Rmu_sc0002535.1_g000011 Rmu_sc0002908.1_g000019 Rmu_sc0003709.1_g000004 Rmu_sc0003882.1_g000054 Rmu_sc0004035.1_g000007 Rmu_sc0004041.1_g000007 Rmu_sc0004288.1_g000011 Rmu_sc0004569.1_g000004 Rmu_sc0004677.1_g000016 Rmu_sc0004834.1_g000010 Rmu_sc0005193.1_g000008 Rmu_sc0005354.1_g000009 Rmu_sc0006514.1_g000021 Rmu_sc0006691.1_g000001 Rmu_sc0006888.1_g000021 Rmu_sc0006889.1_g000013 Rmu_sc0008096.1_g000017 Rmu_sc0008378.1_g000003 Rmu_sc0009127.1_g000005 Rmu_sc0009191.1_g000016 Rmu_sc0009687.1_g000018 Rmu_sc0009709.1_g000005 Rmu_sc0009880.1_g000015 Rmu_sc0011710.1_g000001 Rmu_sc0012615.1_g000004 Rmu_sc0016091.1_g000002 Rmu_sc0022339.1_g000006 Rmu_sc0026537.1_g000002 Rmu_sc0027689.1_g000002 Rmu_sc0036222.1_g000001 Rmu_sc0040890.1_g000001 Rmu_ssc0000148.1_g000006 Rmu_ssc0000151.1_g000017 Rmu_ssc0000404.1_g000018 Rmu_ssc0000449.1_g000009
rosa_roxburghii Rroxscaffold_1G00017760 Rroxscaffold_1G00059150 Rroxscaffold_2G00142560 Rroxscaffold_3G00220440 Rroxscaffold_3G00231700 Rroxscaffold_3G00232400 Rroxscaffold_3G00274510 Rroxscaffold_4G00288790 Rroxscaffold_4G00305680 Rroxscaffold_4G00314880 Rroxscaffold_4G00314900 Rroxscaffold_5G00334590 Rroxscaffold_6G00394110 Rroxscaffold_6G00415860 Rroxscaffold_7G00168240 Rroxscaffold_7G00204400 Rroxscaffold_7G00207840
rosa_rugosa Rorug01G0034900 Rorug02G0079500 Rorug02G0229000 Rorug02G0229100 Rorug02G0291400 Rorug02G0298800 Rorug03G0046400 Rorug03G0064700 Rorug03G0077300 Rorug03G0199000 Rorug03G0200400 Rorug04G0205200 Rorug05G0025400 Rorug05G0127400 Rorug05G0192100 Rorug05G0453400 Rorug05G0538300 Rorug06G0035200 Rorug06G0241000 Rorug06G0268300 Rorug07G0120300 Rorug07G0145000 Rorug07G0209100 Rorug07G0240500 Rorug07G0271700
rosa_samantha Rh1AG179100 Rh1BG106900 Rh1BG163400 Rh1BG163500 Rh1BG323500 Rh2CG447900 Rh2DG503700 Rh3AG293600 Rh3CG229100 Rh3DG221500 Rh4AG106000 Rh4BG267700 Rh4CG062500 Rh4CG090100 Rh4CG114800 Rh5AG038400 Rh5BG395400 Rh5CG441700 Rh5CG572000 Rh6AG222400 Rh6AG264500 Rh6BG137400 Rh6BG225700 Rh6CG144300 Rh6DG087600 Rh6DG096000 Rh6DG362400 Rh6DG390200 Rh7AG207500 Rh7AG324700 Rh7AG388800 Rh7AG437100 Rh7BG019000 Rh7BG374600 Rh7CG028700 Rh7CG341500 Rh7CG408000 Rh7CG408300 Rh7DG354600
rosa_wichuraiana Rw0G009630 Rw0G012170 Rw4G022700 Rw5G028420 Rw5G029490 Rw6G007220 Rw6G007410 Rw6G017880 Rw7G012440 Rw7G021830 Rw7G027490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 698
AccB1I GGYRCC 3 cut(s) 4, 478, 1439
AccB7I CCANNNNNTGG 1 cut(s) 177
AccBSI CCGCTC 1 cut(s) 340
AccI GTMKAC 1 cut(s) 1180
AccIII TCCGGA 1 cut(s) 100
AciI CCGC 2 cut(s) 340, 419
AclWI GGATC 6 cut(s) 111, 234, 416, 461, 1050, 1063
AcsI RAATTY 3 cut(s) 211, 538, 1354
AcuI CTGAAG 2 cut(s) 1132, 1298
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 1 cut(s) 287
AfiI CCNNNNNNNGG 4 cut(s) 177, 529, 566, 904
AflII CTTAAG 1 cut(s) 449
AgeI ACCGGT 1 cut(s) 624
AgsI TTSAA 8 cut(s) 211, 437, 634, 665, 713, 754, 791, 818
AjnI CCWGG 2 cut(s) 147, 1386
AluBI AGCT 7 cut(s) 187, 717, 929, 1010, 1067, 1276, 1433
AluI AGCT 7 cut(s) 187, 717, 929, 1010, 1067, 1276, 1433
Alw21I GWGCWC 2 cut(s) 1012, 1069
Alw26I GTCTC 2 cut(s) 646, 726
AlwI GGATC 6 cut(s) 111, 234, 416, 461, 1050, 1063
Ama87I CYCGRG 1 cut(s) 470
Aor13HI TCCGGA 1 cut(s) 100
AoxI GGCC 1 cut(s) 947
ApeKI GCWGC 3 cut(s) 259, 929, 1360
ApoI RAATTY 3 cut(s) 211, 538, 1354
AsiGI ACCGGT 1 cut(s) 624
AspLEI GCGC 2 cut(s) 7, 1349
AspS9I GGNCC 2 cut(s) 145, 519
AsuHPI GGTGA 5 cut(s) 56, 433, 791, 813, 887
AsuNHI GCTAGC 1 cut(s) 380
AvaI CYCGRG 1 cut(s) 470
AvaII GGWCC 2 cut(s) 145, 519
BaeGI GKGCMC 1 cut(s) 853
BaeI ACNNNNGTAYC 2 cut(s) 305, 338
BamHI GGATCC 1 cut(s) 1055
BanI GGYRCC 3 cut(s) 4, 478, 1439
BanII GRGCYC 2 cut(s) 1012, 1069
BbsI GAAGAC 1 cut(s) 798
Bbv12I GWGCWC 2 cut(s) 1012, 1069
BbvI GCAGC 3 cut(s) 246, 916, 1347
BccI CCATC 3 cut(s) 136, 171, 771
BceAI ACGGC 1 cut(s) 234
BciT130I CCWGG 2 cut(s) 149, 1388
BclI TGATCA 1 cut(s) 679
BcoDI GTCTC 2 cut(s) 646, 726
BfaI CTAG 5 cut(s) 381, 492, 524, 825, 1199
BfmI CTRYAG 1 cut(s) 260
BfoI RGCGCY 1 cut(s) 8
BfrI CTTAAG 1 cut(s) 449
BisI GCNGC 4 cut(s) 260, 341, 930, 1361
BlsI GCNGC 4 cut(s) 261, 342, 931, 1362
Bme1390I CCNGG 2 cut(s) 149, 1388
Bme18I GGWCC 2 cut(s) 145, 519
BmeT110I CYCGRG 1 cut(s) 470
BmgT120I GGNCC 2 cut(s) 145, 519
BmiI GGNNCC 7 cut(s) 6, 480, 521, 1041, 1057, 1128, 1441
BmrFI CCNGG 2 cut(s) 149, 1388
BmsI GCATC 1 cut(s) 381
BmtI GCTAGC 1 cut(s) 384
BpiI GAAGAC 1 cut(s) 798
BpuEI CTTGAG 1 cut(s) 1361
BsaHI GRCGYC 1 cut(s) 5
BsaI GGTCTC 1 cut(s) 646
BsaJI CCNNGG 2 cut(s) 471, 1386
BsaWI WCCGGW 2 cut(s) 100, 624
BsaXI ACNNNNNCTCC 2 cut(s) 467, 497
Bsc4I CCNNNNNNNGG 4 cut(s) 177, 529, 566, 904
Bse118I RCCGGY 2 cut(s) 255, 624
Bse3DI GCAATG 1 cut(s) 1309
BseAI TCCGGA 1 cut(s) 100
BseBI CCWGG 2 cut(s) 149, 1388
BseDI CCNNGG 2 cut(s) 471, 1386
BseGI GGATG 1 cut(s) 358
BseLI CCNNNNNNNGG 4 cut(s) 177, 529, 566, 904
BseMI GCAATG 1 cut(s) 1309
BseMII CTCAG 1 cut(s) 1364
BseRI GAGGAG 2 cut(s) 66, 488
BseSI GKGCMC 1 cut(s) 853
BseXI GCAGC 3 cut(s) 246, 916, 1347
Bsh1285I CGRYCG 1 cut(s) 625
BshFI GGCC 1 cut(s) 949
BshNI GGYRCC 3 cut(s) 4, 478, 1439
BshTI ACCGGT 1 cut(s) 624
BsiEI CGRYCG 1 cut(s) 625
BsiHKAI GWGCWC 2 cut(s) 1012, 1069
BsiHKCI CYCGRG 1 cut(s) 470
BsiSI CCGG 3 cut(s) 101, 256, 625
BslFI GGGAC 1 cut(s) 505
BslI CCNNNNNNNGG 4 cut(s) 177, 529, 566, 904
BsmAI GTCTC 2 cut(s) 646, 726
BsmBI CGTCTC 1 cut(s) 726
BsmFI GGGAC 1 cut(s) 505
BsnI GGCC 1 cut(s) 949
Bso31I GGTCTC 1 cut(s) 646
BsoBI CYCGRG 1 cut(s) 470
Bsp1286I GDGCHC 3 cut(s) 853, 1012, 1069
Bsp13I TCCGGA 1 cut(s) 100
Bsp143I GATC 8 cut(s) 94, 103, 239, 408, 466, 679, 1055, 1270
BspACI CCGC 2 cut(s) 340, 419
BspANI GGCC 1 cut(s) 949
BspCNI CTCAG 1 cut(s) 1363
BspEI TCCGGA 1 cut(s) 100
BspLI GGNNCC 7 cut(s) 6, 480, 521, 1041, 1057, 1128, 1441
BspMAI CTGCAG 1 cut(s) 264
BspOI GCTAGC 1 cut(s) 384
BspPI GGATC 6 cut(s) 111, 234, 416, 461, 1050, 1063
BspT107I GGYRCC 3 cut(s) 4, 478, 1439
BspTI CTTAAG 1 cut(s) 449
BspTNI GGTCTC 1 cut(s) 646
BsrBI CCGCTC 1 cut(s) 340
BsrDI GCAATG 1 cut(s) 1309
BsrFI RCCGGY 2 cut(s) 255, 624
BssAI RCCGGY 2 cut(s) 255, 624
BssECI CCNNGG 2 cut(s) 471, 1386
BssMI GATC 8 cut(s) 94, 103, 239, 408, 466, 679, 1055, 1270
BssNAI GTATAC 1 cut(s) 1181
BssNI GRCGYC 1 cut(s) 5
Bst1107I GTATAC 1 cut(s) 1181
Bst2UI CCWGG 2 cut(s) 149, 1388
Bst4CI ACNGT 7 cut(s) 139, 318, 367, 483, 833, 1185, 1447
Bst6I CTCTTC 3 cut(s) 552, 660, 1151
BstACI GRCGYC 1 cut(s) 5
BstAFI CTTAAG 1 cut(s) 449
BstAPI GCANNNNNTGC 1 cut(s) 996
BstC8I GCNNGC 3 cut(s) 382, 386, 1065
BstDEI CTNAG 8 cut(s) 15, 89, 551, 588, 767, 860, 944, 1350
BstF5I GGATG 1 cut(s) 358
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 2 cut(s) 7, 1349
BstKTI GATC 8 cut(s) 97, 106, 242, 411, 469, 682, 1058, 1273
BstMAI GTCTC 2 cut(s) 646, 726
BstMBI GATC 8 cut(s) 94, 103, 239, 408, 466, 679, 1055, 1270
BstMCI CGRYCG 1 cut(s) 625
BstMWI GCNNNNNNNGC 2 cut(s) 996, 1439
BstNI CCWGG 2 cut(s) 149, 1388
BstNSI RCATGY 1 cut(s) 249
BstSCI CCNGG 2 cut(s) 147, 1386
BstSFI CTRYAG 1 cut(s) 260
BstSLI GKGCMC 1 cut(s) 853
BstV1I GCAGC 3 cut(s) 246, 916, 1347
BstV2I GAAGAC 1 cut(s) 798
BstX2I RGATCY 2 cut(s) 239, 1055
BstYI RGATCY 2 cut(s) 239, 1055
BstZ17I GTATAC 1 cut(s) 1181
BsuRI GGCC 1 cut(s) 949
BtsCI GGATG 1 cut(s) 358
BtsI GCAGTG 1 cut(s) 534
BtsIMutI CAGTG 1 cut(s) 534
Cac8I GCNNGC 3 cut(s) 382, 386, 1065
CfoI GCGC 2 cut(s) 7, 1349
Cfr10I RCCGGY 2 cut(s) 255, 624
Cfr13I GGNCC 2 cut(s) 145, 519
CseI GACGC 1 cut(s) 484
CsiI ACCWGGT 1 cut(s) 147
Csp6I GTAC 1 cut(s) 286
CspAI ACCGGT 1 cut(s) 624
CviAII CATG 5 cut(s) 76, 246, 405, 645, 1060
CviQI GTAC 1 cut(s) 286
DdeI CTNAG 8 cut(s) 15, 89, 551, 588, 767, 860, 944, 1350
DinI GGCGCC 1 cut(s) 6
DpnI GATC 8 cut(s) 96, 105, 241, 410, 468, 681, 1057, 1272
DpnII GATC 8 cut(s) 94, 103, 239, 408, 466, 679, 1055, 1270
Eam1104I CTCTTC 3 cut(s) 552, 660, 1151
EarI CTCTTC 3 cut(s) 552, 660, 1151
Ecl136II GAGCTC 2 cut(s) 1010, 1067
Eco147I AGGCCT 1 cut(s) 949
Eco24I GRGCYC 2 cut(s) 1012, 1069
Eco31I GGTCTC 1 cut(s) 646
Eco47I GGWCC 2 cut(s) 145, 519
Eco53kI GAGCTC 2 cut(s) 1010, 1067
Eco57I CTGAAG 2 cut(s) 1132, 1298
Eco88I CYCGRG 1 cut(s) 470
EcoICRI GAGCTC 2 cut(s) 1010, 1067
EcoO109I RGGNCCY 1 cut(s) 519
EcoRII CCWGG 2 cut(s) 147, 1386
EcoT38I GRGCYC 2 cut(s) 1012, 1069
EgeI GGCGCC 1 cut(s) 6
EheI GGCGCC 1 cut(s) 6
Esp3I CGTCTC 1 cut(s) 726
FaeI CATG 5 cut(s) 79, 249, 408, 648, 1063
FaqI GGGAC 1 cut(s) 505
FatI CATG 5 cut(s) 75, 245, 404, 644, 1059
FbaI TGATCA 1 cut(s) 679
FblI GTMKAC 1 cut(s) 1180
Fnu4HI GCNGC 4 cut(s) 260, 341, 930, 1361
FokI GGATG 1 cut(s) 365
FriOI GRGCYC 2 cut(s) 1012, 1069
Fsp4HI GCNGC 4 cut(s) 260, 341, 930, 1361
FspBI CTAG 5 cut(s) 381, 492, 524, 825, 1199
GlaI GCGC 2 cut(s) 6, 1348
GluI GCNGC 4 cut(s) 260, 341, 930, 1361
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 1 cut(s) 949
HapII CCGG 3 cut(s) 101, 256, 625
HgaI GACGC 1 cut(s) 484
HhaI GCGC 2 cut(s) 7, 1349
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 5 cut(s) 79, 249, 408, 648, 1063
Hin6I GCGC 2 cut(s) 5, 1347
HinP1I GCGC 2 cut(s) 5, 1347
HinfI GANTC 7 cut(s) 223, 396, 457, 818, 892, 1307, 1391
HpaII CCGG 3 cut(s) 101, 256, 625
HphI GGTGA 5 cut(s) 56, 433, 791, 813, 887
Hpy166II GTNNAC 1 cut(s) 1181
Hpy188I TCNGA 5 cut(s) 726, 917, 1151, 1353, 1396
Hpy188III TCNNGA 6 cut(s) 101, 470, 677, 1199, 1340, 1457
Hpy8I GTNNAC 1 cut(s) 1181
Hpy99I CGWCG 1 cut(s) 232
HpyAV CCTTC 2 cut(s) 41, 1273
HpyCH4III ACNGT 7 cut(s) 139, 318, 367, 483, 833, 1185, 1447
HpyCH4IV ACGT 1 cut(s) 272
HpyF10VI GCNNNNNNNGC 2 cut(s) 996, 1439
HpyF3I CTNAG 8 cut(s) 15, 89, 551, 588, 767, 860, 944, 1350
HpySE526I ACGT 1 cut(s) 272
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 5 cut(s) 79, 249, 408, 648, 1063
HspAI GCGC 2 cut(s) 5, 1347
KasI GGCGCC 1 cut(s) 4
Kpn2I TCCGGA 1 cut(s) 100
Ksp22I TGATCA 1 cut(s) 679
Kzo9I GATC 8 cut(s) 94, 103, 239, 408, 466, 679, 1055, 1270
LmnI GCTCC 2 cut(s) 337, 1072
Lsp1109I GCAGC 3 cut(s) 246, 916, 1347
LweI GCATC 1 cut(s) 381
MabI ACCWGGT 1 cut(s) 147
MaeI CTAG 5 cut(s) 381, 492, 524, 825, 1199
MaeII ACGT 1 cut(s) 272
MaeIII GTNAC 3 cut(s) 251, 669, 1402
MalI GATC 8 cut(s) 96, 105, 241, 410, 468, 681, 1057, 1272
MbiI CCGCTC 1 cut(s) 340
MboI GATC 8 cut(s) 94, 103, 239, 408, 466, 679, 1055, 1270
MboII GAAGA 5 cut(s) 89, 539, 677, 803, 1138
MfeI CAATTG 2 cut(s) 331, 1317
MflI RGATCY 2 cut(s) 239, 1055
MhlI GDGCHC 3 cut(s) 853, 1012, 1069
MluCI AATT 8 cut(s) 211, 331, 538, 693, 884, 962, 1317, 1354
Mly113I GGCGCC 1 cut(s) 5
MlyI GAGTC 3 cut(s) 390, 451, 1301
MmeI TCCRAC 2 cut(s) 573, 854
MroI TCCGGA 1 cut(s) 100
MseI TTAA 5 cut(s) 450, 599, 839, 1035, 1415
MslI CAYNNNNRTG 1 cut(s) 800
MspA1I CMGCKG 1 cut(s) 1276
MspCI CTTAAG 1 cut(s) 449
MspI CCGG 3 cut(s) 101, 256, 625
MspR9I CCNGG 2 cut(s) 149, 1388
MunI CAATTG 2 cut(s) 331, 1317
MvaI CCWGG 2 cut(s) 149, 1388
MwoI GCNNNNNNNGC 2 cut(s) 996, 1439
NarI GGCGCC 1 cut(s) 5
NdeII GATC 8 cut(s) 94, 103, 239, 408, 466, 679, 1055, 1270
NheI GCTAGC 1 cut(s) 380
NlaIII CATG 5 cut(s) 79, 249, 408, 648, 1063
NlaIV GGNNCC 7 cut(s) 6, 480, 521, 1041, 1057, 1128, 1441
NspI RCATGY 1 cut(s) 249
PceI AGGCCT 1 cut(s) 949
PfeI GAWTC 4 cut(s) 223, 818, 892, 1391
PflMI CCANNNNNTGG 1 cut(s) 177
PinAI ACCGGT 1 cut(s) 624
PkrI GCNGC 4 cut(s) 261, 342, 931, 1362
PleI GAGTC 3 cut(s) 390, 451, 1301
PluTI GGCGCC 1 cut(s) 8
PpsI GAGTC 3 cut(s) 390, 451, 1301
PpuMI RGGWCCY 1 cut(s) 519
PsiI TTATAA 1 cut(s) 698
Psp124BI GAGCTC 2 cut(s) 1012, 1069
Psp5II RGGWCCY 1 cut(s) 519
Psp6I CCWGG 2 cut(s) 147, 1386
PspGI CCWGG 2 cut(s) 147, 1386
PspN4I GGNNCC 7 cut(s) 6, 480, 521, 1041, 1057, 1128, 1441
PspPI GGNCC 2 cut(s) 145, 519
PspPPI RGGWCCY 1 cut(s) 519
PstI CTGCAG 1 cut(s) 264
PsuI RGATCY 2 cut(s) 239, 1055
PvuII CAGCTG 1 cut(s) 1276
RsaI GTAC 1 cut(s) 287
RsaNI GTAC 1 cut(s) 286
RseI CAYNNNNRTG 1 cut(s) 800
SacI GAGCTC 2 cut(s) 1012, 1069
SaqAI TTAA 5 cut(s) 450, 599, 839, 1035, 1415
SatI GCNGC 4 cut(s) 260, 341, 930, 1361
Sau3AI GATC 8 cut(s) 94, 103, 239, 408, 466, 679, 1055, 1270
Sau96I GGNCC 2 cut(s) 145, 519
SchI GAGTC 3 cut(s) 390, 451, 1301
ScrFI CCNGG 2 cut(s) 149, 1388
SduI GDGCHC 3 cut(s) 853, 1012, 1069
SexAI ACCWGGT 1 cut(s) 147
SfaNI GCATC 1 cut(s) 381
SfcI CTRYAG 1 cut(s) 260
SfoI GGCGCC 1 cut(s) 6
SinI GGWCC 2 cut(s) 145, 519
SmiMI CAYNNNNRTG 1 cut(s) 800
SmlI CTYRAG 2 cut(s) 449, 1340
SmoI CTYRAG 2 cut(s) 449, 1340
Sse9I AATT 8 cut(s) 211, 331, 538, 693, 884, 962, 1317, 1354
SseBI AGGCCT 1 cut(s) 949
SsiI CCGC 2 cut(s) 340, 419
SspDI GGCGCC 1 cut(s) 4
SspI AATATT 3 cut(s) 732, 844, 1081
SspMI CTAG 5 cut(s) 381, 492, 524, 825, 1199
SstI GAGCTC 2 cut(s) 1012, 1069
StuI AGGCCT 1 cut(s) 949
StyD4I CCNGG 2 cut(s) 147, 1386
TaaI ACNGT 7 cut(s) 139, 318, 367, 483, 833, 1185, 1447
TaiI ACGT 1 cut(s) 275
TaqI TCGA 2 cut(s) 154, 394
TasI AATT 8 cut(s) 211, 331, 538, 693, 884, 962, 1317, 1354
TauI GCSGC 1 cut(s) 343
TfiI GAWTC 4 cut(s) 223, 818, 892, 1391
Tru1I TTAA 5 cut(s) 450, 599, 839, 1035, 1415
Tru9I TTAA 5 cut(s) 450, 599, 839, 1035, 1415
TscAI CASTG 1 cut(s) 534
TseI GCWGC 3 cut(s) 259, 929, 1360
TspGWI ACGGA 2 cut(s) 216, 477
TspRI CASTG 1 cut(s) 534
Van91I CCANNNNNTGG 1 cut(s) 177
Vha464I CTTAAG 1 cut(s) 449
VpaK11BI GGWCC 2 cut(s) 145, 519
XapI RAATTY 3 cut(s) 211, 538, 1354
XbaI TCTAGA 1 cut(s) 1198
XceI RCATGY 1 cut(s) 249
XmiI GTMKAC 1 cut(s) 1180
XspI CTAG 5 cut(s) 381, 492, 524, 825, 1199
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.