ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Dirigent | PF03018 | 41 - 181 | 6.4e-56 | Dirigent-like protein |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 509 |
| AciI | CCGC | 2 cut(s) | 124, 156 |
| AclWI | GGATC | 1 cut(s) | 233 |
| AcoI | YGGCCR | 1 cut(s) | 157 |
| AcsI | RAATTY | 3 cut(s) | 180, 294, 343 |
| AfaI | GTAC | 3 cut(s) | 368, 379, 530 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 437, 509 |
| AgsI | TTSAA | 1 cut(s) | 499 |
| AluBI | AGCT | 5 cut(s) | 213, 267, 274, 287, 452 |
| AluI | AGCT | 5 cut(s) | 213, 267, 274, 287, 452 |
| Alw21I | GWGCWC | 1 cut(s) | 289 |
| AlwI | GGATC | 1 cut(s) | 233 |
| AoxI | GGCC | 2 cut(s) | 157, 188 |
| ApoI | RAATTY | 3 cut(s) | 180, 294, 343 |
| AspS9I | GGNCC | 2 cut(s) | 188, 337 |
| AsuNHI | GCTAGC | 1 cut(s) | 263 |
| AvaII | GGWCC | 1 cut(s) | 337 |
| BanII | GRGCYC | 1 cut(s) | 289 |
| Bbv12I | GWGCWC | 1 cut(s) | 289 |
| BciVI | GTATCC | 1 cut(s) | 406 |
| BfaI | CTAG | 3 cut(s) | 264, 479, 553 |
| BfmI | CTRYAG | 1 cut(s) | 432 |
| BfuI | GTATCC | 1 cut(s) | 406 |
| BisI | GCNGC | 1 cut(s) | 157 |
| BlsI | GCNGC | 1 cut(s) | 158 |
| Bme18I | GGWCC | 1 cut(s) | 337 |
| BmgT120I | GGNCC | 2 cut(s) | 188, 337 |
| BmsI | GCATC | 2 cut(s) | 417, 505 |
| BmtI | GCTAGC | 1 cut(s) | 267 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 251, 283 |
| BpmI | CTGGAG | 1 cut(s) | 531 |
| Bpu10I | CCTNAGC | 2 cut(s) | 288, 383 |
| BsaJI | CCNNGG | 1 cut(s) | 151 |
| BsaWI | WCCGGW | 1 cut(s) | 456 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 504, 534 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 437, 509 |
| Bse1I | ACTGG | 2 cut(s) | 514, 526 |
| BseDI | CCNNGG | 1 cut(s) | 151 |
| BseGI | GGATG | 1 cut(s) | 147 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 437, 509 |
| BseMII | CTCAG | 2 cut(s) | 87, 302 |
| BseNI | ACTGG | 2 cut(s) | 514, 526 |
| BseRI | GAGGAG | 1 cut(s) | 75 |
| BshFI | GGCC | 2 cut(s) | 159, 190 |
| BsiHKAI | GWGCWC | 1 cut(s) | 289 |
| BsiSI | CCGG | 1 cut(s) | 457 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 437, 509 |
| BsmI | GAATGC | 1 cut(s) | 387 |
| BsnI | GGCC | 2 cut(s) | 159, 190 |
| Bsp1286I | GDGCHC | 1 cut(s) | 289 |
| Bsp1407I | TGTACA | 1 cut(s) | 366 |
| Bsp143I | GATC | 1 cut(s) | 238 |
| BspACI | CCGC | 2 cut(s) | 124, 156 |
| BspANI | GGCC | 2 cut(s) | 159, 190 |
| BspCNI | CTCAG | 2 cut(s) | 86, 301 |
| BspOI | GCTAGC | 1 cut(s) | 267 |
| BspPI | GGATC | 1 cut(s) | 233 |
| BspQI | GCTCTTC | 1 cut(s) | 277 |
| BsrGI | TGTACA | 1 cut(s) | 366 |
| BsrI | ACTGG | 2 cut(s) | 514, 526 |
| BssECI | CCNNGG | 1 cut(s) | 151 |
| BssMI | GATC | 1 cut(s) | 238 |
| BssT1I | CCWWGG | 1 cut(s) | 151 |
| Bst6I | CTCTTC | 1 cut(s) | 277 |
| BstAUI | TGTACA | 1 cut(s) | 366 |
| BstC8I | GCNNGC | 2 cut(s) | 25, 265 |
| BstDEI | CTNAG | 4 cut(s) | 73, 176, 288, 383 |
| BstF5I | GGATG | 1 cut(s) | 147 |
| BstKTI | GATC | 1 cut(s) | 241 |
| BstMBI | GATC | 1 cut(s) | 238 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 427 |
| BstSFI | CTRYAG | 1 cut(s) | 432 |
| BsuI | GTATCC | 1 cut(s) | 406 |
| BsuRI | GGCC | 2 cut(s) | 159, 190 |
| BtsCI | GGATG | 1 cut(s) | 147 |
| BtsI | GCAGTG | 1 cut(s) | 451 |
| BtsIMutI | CAGTG | 3 cut(s) | 242, 451, 546 |
| Cac8I | GCNNGC | 2 cut(s) | 25, 265 |
| Cfr13I | GGNCC | 2 cut(s) | 188, 337 |
| Csp6I | GTAC | 3 cut(s) | 367, 378, 529 |
| CviAII | CATG | 5 cut(s) | 62, 143, 317, 334, 418 |
| CviQI | GTAC | 3 cut(s) | 367, 378, 529 |
| DdeI | CTNAG | 4 cut(s) | 73, 176, 288, 383 |
| DpnI | GATC | 1 cut(s) | 240 |
| DpnII | GATC | 1 cut(s) | 238 |
| EaeI | YGGCCR | 1 cut(s) | 157 |
| Eam1104I | CTCTTC | 1 cut(s) | 277 |
| EarI | CTCTTC | 1 cut(s) | 277 |
| Ecl136II | GAGCTC | 1 cut(s) | 287 |
| Eco130I | CCWWGG | 1 cut(s) | 151 |
| Eco24I | GRGCYC | 1 cut(s) | 289 |
| Eco47I | GGWCC | 1 cut(s) | 337 |
| Eco53kI | GAGCTC | 1 cut(s) | 287 |
| EcoICRI | GAGCTC | 1 cut(s) | 287 |
| EcoRI | GAATTC | 1 cut(s) | 180 |
| EcoT14I | CCWWGG | 1 cut(s) | 151 |
| EcoT38I | GRGCYC | 1 cut(s) | 289 |
| ErhI | CCWWGG | 1 cut(s) | 151 |
| FaeI | CATG | 5 cut(s) | 65, 146, 320, 337, 421 |
| FatI | CATG | 5 cut(s) | 61, 142, 316, 333, 417 |
| FauI | CCCGC | 1 cut(s) | 131 |
| Fnu4HI | GCNGC | 1 cut(s) | 157 |
| FokI | GGATG | 1 cut(s) | 134 |
| FriOI | GRGCYC | 1 cut(s) | 289 |
| Fsp4HI | GCNGC | 1 cut(s) | 157 |
| FspBI | CTAG | 3 cut(s) | 264, 479, 553 |
| GluI | GCNGC | 1 cut(s) | 157 |
| GsuI | CTGGAG | 1 cut(s) | 531 |
| HaeIII | GGCC | 2 cut(s) | 159, 190 |
| HapII | CCGG | 1 cut(s) | 457 |
| Hin1II | CATG | 5 cut(s) | 65, 146, 320, 337, 421 |
| HindIII | AAGCTT | 1 cut(s) | 272 |
| HinfI | GANTC | 2 cut(s) | 320, 400 |
| HpaII | CCGG | 1 cut(s) | 457 |
| Hpy188I | TCNGA | 4 cut(s) | 76, 168, 218, 440 |
| Hpy188III | TCNNGA | 1 cut(s) | 340 |
| HpyAV | CCTTC | 2 cut(s) | 58, 505 |
| HpyCH4V | TGCA | 3 cut(s) | 101, 464, 476 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 427 |
| HpyF3I | CTNAG | 4 cut(s) | 73, 176, 288, 383 |
| Hsp92II | CATG | 5 cut(s) | 65, 146, 320, 337, 421 |
| Kzo9I | GATC | 1 cut(s) | 238 |
| LguI | GCTCTTC | 1 cut(s) | 277 |
| LmnI | GCTCC | 1 cut(s) | 449 |
| LpnPI | CCDG | 8 cut(s) | 37, 270, 275, 309, 353, 470, 495, 539 |
| LweI | GCATC | 2 cut(s) | 417, 505 |
| MaeI | CTAG | 3 cut(s) | 264, 479, 553 |
| MaeIII | GTNAC | 2 cut(s) | 13, 543 |
| MalI | GATC | 1 cut(s) | 240 |
| MboI | GATC | 1 cut(s) | 238 |
| MboII | GAAGA | 1 cut(s) | 294 |
| MhlI | GDGCHC | 1 cut(s) | 289 |
| MluCI | AATT | 4 cut(s) | 57, 180, 294, 343 |
| MmeI | TCCRAC | 2 cut(s) | 191, 418 |
| MnlI | CCTC | 7 cut(s) | 55, 96, 137, 253, 352, 390, 434 |
| MspI | CCGG | 1 cut(s) | 457 |
| Mva1269I | GAATGC | 1 cut(s) | 387 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 427 |
| NdeII | GATC | 1 cut(s) | 238 |
| NheI | GCTAGC | 1 cut(s) | 263 |
| NlaIII | CATG | 5 cut(s) | 65, 146, 320, 337, 421 |
| NmuCI | GTSAC | 1 cut(s) | 13 |
| PciSI | GCTCTTC | 1 cut(s) | 277 |
| PctI | GAATGC | 1 cut(s) | 387 |
| PfeI | GAWTC | 2 cut(s) | 320, 400 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 509 |
| PkrI | GCNGC | 1 cut(s) | 158 |
| Psp124BI | GAGCTC | 1 cut(s) | 289 |
| PspPI | GGNCC | 2 cut(s) | 188, 337 |
| RsaI | GTAC | 3 cut(s) | 368, 379, 530 |
| RsaNI | GTAC | 3 cut(s) | 367, 378, 529 |
| SacI | GAGCTC | 1 cut(s) | 289 |
| SapI | GCTCTTC | 1 cut(s) | 277 |
| SatI | GCNGC | 1 cut(s) | 157 |
| Sau3AI | GATC | 1 cut(s) | 238 |
| Sau96I | GGNCC | 2 cut(s) | 188, 337 |
| SduI | GDGCHC | 1 cut(s) | 289 |
| SetI | ASST | 6 cut(s) | 47, 215, 269, 276, 289, 454 |
| SfaNI | GCATC | 2 cut(s) | 417, 505 |
| SfcI | CTRYAG | 1 cut(s) | 432 |
| SinI | GGWCC | 1 cut(s) | 337 |
| Sse9I | AATT | 4 cut(s) | 57, 180, 294, 343 |
| SsiI | CCGC | 2 cut(s) | 124, 156 |
| SspMI | CTAG | 3 cut(s) | 264, 479, 553 |
| SstI | GAGCTC | 1 cut(s) | 289 |
| StyI | CCWWGG | 1 cut(s) | 151 |
| TaqII | GACCGA | 1 cut(s) | 263 |
| TasI | AATT | 4 cut(s) | 57, 180, 294, 343 |
| TatI | WGTACW | 2 cut(s) | 366, 528 |
| TauI | GCSGC | 1 cut(s) | 159 |
| TfiI | GAWTC | 2 cut(s) | 320, 400 |
| TscAI | CASTG | 3 cut(s) | 249, 451, 546 |
| TseFI | GTSAC | 1 cut(s) | 13 |
| Tsp45I | GTSAC | 1 cut(s) | 13 |
| TspDTI | ATGAA | 4 cut(s) | 19, 50, 217, 343 |
| TspRI | CASTG | 3 cut(s) | 249, 451, 546 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 509 |
| VpaK11BI | GGWCC | 1 cut(s) | 337 |
| XapI | RAATTY | 3 cut(s) | 180, 294, 343 |
| XspI | CTAG | 3 cut(s) | 264, 479, 553 |