MD15G1334000.v1.1

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0000093
Physical Location & Seq
Forward (+)
37129234 .. 37133473
4240 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1334000.v1.1.491

Sequence Viewer

Length: 1479 bp
ATGGACAAAAACTATTTTGATATGAATTGTATGGGTCTATCTGGGTTTACGGATTTGATGAGAAGGAGTGCTGAAGGGCTTAAACCTAAACCGTCCCTGTTGGGCTCGGTTCAAGTCTCGAAAAATCTGAAGGTGAAGTCACTGATTTGTCCTGAGAGTGGGGAGTGGGAAATTGACTTTTTAAAACCTTTCTTGGCGGAATCAGAGGTTGAGGCAATCTTGGCTATGCATATTGGTGATCCGACGCTCAAGGACAGATTGGTGGTTTGGTTTGGGGGTATGCTGAACTTGAGACCTCATCCGCTGCATGTTTCAAGCTGGGCAAACTGGATTGTGCAAATGGGTGATTTGGAGACTGGGTCAATGGAGGTGAGGATTAATCGCTTATCTTATATTGCTTTCACATGCTGGCATATTTGGAAATCAAGATGTGATTTCCAGTTCAACAACCAAGTTATATACCCCAACAGGGTGGTAGCAGCTATCTCCAGATCGGTCTCGGCTTATCAGGATTTTATCAACAGGCCGAGTTTCCCATCTTTGCTCAATCAACCGAACTTGGGGGATGAAGTGCAGTGGTCTCCTCCGAATCAAGGAGTCATCAAAATTAATGTGGATGCTAGCTGGGATGCAAGTGTGGGTGGGGGCTTCATGGGGGTGGTGGCGAGGGATGAGAATGGGCGGTTTTTGGCTGCTTCTAGGCTTAGAGTAAAGGCTACAGGTGCTACGATGGCTGAGGCTTTGGCCATTTTACATGGGTGTAAGCTGGGGGTTAGAAACGGGTGGAATTCCATTTGTATTGAATCGGACTCGTTCGATGCAATTTCTTGTCTGAGGGATCCGGCAAAGAAGGGCAGTTGGGATGCCTTTCCCATTCTTAGGAAGTGCTATCGATTGGGAATGGCTTTTCAGGCTTGCCACTGGTCTTGGGTACCAAGACTGGCCAACTCGGTAGCGGACTTTTTGGCGTCGCGAAAATGTAGGGAAGCATGTGATCAAATATGGGTCCATAGACCCCCATCTTCCCTGGCTTTCTTGTTTCTTTTTGGCATCTTTGCCCGGATATATCATATCTGTTTTCCAAAAAAAAAAATGTCCATAAATTTCTGGAATTGGACCAATATATTACAAGATCAAGCTTTTCATTTCTGCTTTTGCACAAACAACATACTCCTTGATGTTTACTGTGAATTTGATTGGGAATTGGATGAACTGGAGGAGTTCACTGATAACCTGATAGAAGAGGAGGAATTATCTGCAGACCAGAAGGATGAATTCAAGGAGTTTGTCAAGGAGAAGTCCGTGAACAAAAGAAATCTAATTGAGAGGGAAACCCGGAGAAAAGCCATTGAAGAAATGAGTGAAGAAGCTAAAACAGCATTTGAAAATATGAGGTTTTACAAGTTCTACCCTGTGCATACACCAGATACTCCTGACATTTCAATTGTTAAGGTTGTCAACAGACCATTCCAAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

493

Amino Acids

56.53

Weight (kDa)

6.4

Isoelectric Point (pI)

49.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 204 - 325 4.8e-17 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000093)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G09490
fragaria_vesca FvH4_1g23791 FvH4_2g01641 FvH4_2g04612 FvH4_2g06831 FvH4_2g07841 FvH4_2g13581 FvH4_2g27220 FvH4_2g30621 FvH4_2g34753 FvH4_3g10392 FvH4_3g24291 FvH4_3g25030 FvH4_3g29361 FvH4_3g31372 FvH4_3g32402 FvH4_3g43651 FvH4_4g03830 FvH4_4g05481 FvH4_4g20431 FvH4_4g21421 FvH4_4g25931 FvH4_5g08801 FvH4_5g21021 FvH4_5g26254 FvH4_5g30931 FvH4_5g31281 FvH4_5g33581 FvH4_5g35622 FvH4_6g02100 FvH4_6g07963 FvH4_6g11620 FvH4_6g16031 FvH4_6g19041 FvH4_6g24211 FvH4_6g24271 FvH4_6g30670 FvH4_6g49540 FvH4_7g25914
malus_domestica MD03G1245200.v1.1 MD04G1168000.v1.1 MD09G1242600.v1.1 MD15G1334000.v1.1 MD17G1165700.v1.1
prunus_persica Prupe.1G073500_v2.0.a1 Prupe.1G283700_v2.0.a1 Prupe.1G524100_v2.0.a1 Prupe.2G022700_v2.0.a1 Prupe.2G022800_v2.0.a1 Prupe.2G022800_v2.0.a1 Prupe.2G044300_v2.0.a1 Prupe.2G048800_v2.0.a1 Prupe.2G092000_v2.0.a1 Prupe.2G216500_v2.0.a1 Prupe.2G216600_v2.0.a1 Prupe.2G216600_v2.0.a1 Prupe.3G103400_v2.0.a1 Prupe.3G143300_v2.0.a1 Prupe.3G190000_v2.0.a1 Prupe.3G219800_v2.0.a1 Prupe.4G177800_v2.0.a1 Prupe.4G261300_v2.0.a1 Prupe.5G044600_v2.0.a1 Prupe.5G067400_v2.0.a1 Prupe.7G083900_v2.0.a1 Prupe.7G120900_v2.0.a1 Prupe.8G032200_v2.0.a1 Prupe.8G036100_v2.0.a1 Prupe.8G042700_v2.0.a1
pyrus_communis pycom01g21710 pycom02g19770 pycom03g05120 pycom05g01370 pycom05g08780 pycom05g10120 pycom07g01370 pycom07g05930 pycom08g15760 pycom08g18090 pycom08g21060 pycom09g03880 pycom10g03870 pycom13g22240 pycom16g05120 pycom16g17170 pycom17g12180 pycom17g16290 pycom17g21230 pycom17g24990 pycom215g00100
rosa_chinensis RchiOBHm_Chr1g0323031 RchiOBHm_Chr1g0324391 RchiOBHm_Chr1g0326401 RchiOBHm_Chr1g0327811 RchiOBHm_Chr1g0332521 RchiOBHm_Chr1g0336501 RchiOBHm_Chr1g0346021 RchiOBHm_Chr1g0347191 RchiOBHm_Chr1g0367181 RchiOBHm_Chr2g0089441 RchiOBHm_Chr2g0115441 RchiOBHm_Chr3g0490691 RchiOBHm_Chr4g0395251 RchiOBHm_Chr4g0398081 RchiOBHm_Chr4g0409451 RchiOBHm_Chr4g0413041 RchiOBHm_Chr4g0415471 RchiOBHm_Chr4g0420961 RchiOBHm_Chr5g0040301 RchiOBHm_Chr5g0070651 RchiOBHm_Chr6g0263011 RchiOBHm_Chr6g0270721 RchiOBHm_Chr6g0277111 RchiOBHm_Chr7g0179771 RchiOBHm_Chr7g0223051 RchiOBHm_Chr7g0225031 RchiOBHm_Chr7g0225091
rosa_laevigata RLG00000001668 RLG00000001672 RLG00000001676 RLG00000007762 RLG00000008994 RLG00000011117 RLG00000013729 RLG00000013839 RLG00000014759 RLG00000016638 RLG00000018535 RLG00000018614 RLG00000018646 RLG00000020679 RLG00000023337 RLG00000029348 RLG00000035891 RLG00000035912
rosa_multiflora Rmu_co8152500.1_g000001 Rmu_co8203314.1_g000001 Rmu_co8383183.1_g000001 Rmu_sc0000293.1_g000033 Rmu_sc0000367.1_g000226 Rmu_sc0000512.1_g000023 Rmu_sc0000594.1_g000059 Rmu_sc0000654.1_g000022 Rmu_sc0000654.1_g000047 Rmu_sc0000706.1_g000037 Rmu_sc0001348.1_g000008 Rmu_sc0001385.1_g000024 Rmu_sc0001405.1_g000002 Rmu_sc0001521.1_g000048 Rmu_sc0001932.1_g000008 Rmu_sc0001932.1_g000009 Rmu_sc0002535.1_g000011 Rmu_sc0002908.1_g000019 Rmu_sc0003709.1_g000004 Rmu_sc0003882.1_g000054 Rmu_sc0004035.1_g000007 Rmu_sc0004041.1_g000007 Rmu_sc0004288.1_g000011 Rmu_sc0004569.1_g000004 Rmu_sc0004677.1_g000016 Rmu_sc0004834.1_g000010 Rmu_sc0005193.1_g000008 Rmu_sc0005354.1_g000009 Rmu_sc0006514.1_g000021 Rmu_sc0006691.1_g000001 Rmu_sc0006888.1_g000021 Rmu_sc0006889.1_g000013 Rmu_sc0008096.1_g000017 Rmu_sc0008378.1_g000003 Rmu_sc0009127.1_g000005 Rmu_sc0009191.1_g000016 Rmu_sc0009687.1_g000018 Rmu_sc0009709.1_g000005 Rmu_sc0009880.1_g000015 Rmu_sc0011710.1_g000001 Rmu_sc0012615.1_g000004 Rmu_sc0016091.1_g000002 Rmu_sc0022339.1_g000006 Rmu_sc0026537.1_g000002 Rmu_sc0027689.1_g000002 Rmu_sc0036222.1_g000001 Rmu_sc0040890.1_g000001 Rmu_ssc0000148.1_g000006 Rmu_ssc0000151.1_g000017 Rmu_ssc0000404.1_g000018 Rmu_ssc0000449.1_g000009
rosa_roxburghii Rroxscaffold_1G00017760 Rroxscaffold_1G00059150 Rroxscaffold_2G00142560 Rroxscaffold_3G00220440 Rroxscaffold_3G00231700 Rroxscaffold_3G00232400 Rroxscaffold_3G00274510 Rroxscaffold_4G00288790 Rroxscaffold_4G00305680 Rroxscaffold_4G00314880 Rroxscaffold_4G00314900 Rroxscaffold_5G00334590 Rroxscaffold_6G00394110 Rroxscaffold_6G00415860 Rroxscaffold_7G00168240 Rroxscaffold_7G00204400 Rroxscaffold_7G00207840
rosa_rugosa Rorug01G0034900 Rorug02G0079500 Rorug02G0229000 Rorug02G0229100 Rorug02G0291400 Rorug02G0298800 Rorug03G0046400 Rorug03G0064700 Rorug03G0077300 Rorug03G0199000 Rorug03G0200400 Rorug04G0205200 Rorug05G0025400 Rorug05G0127400 Rorug05G0192100 Rorug05G0453400 Rorug05G0538300 Rorug06G0035200 Rorug06G0241000 Rorug06G0268300 Rorug07G0120300 Rorug07G0145000 Rorug07G0209100 Rorug07G0240500 Rorug07G0271700
rosa_samantha Rh1AG179100 Rh1BG106900 Rh1BG163400 Rh1BG163500 Rh1BG323500 Rh2CG447900 Rh2DG503700 Rh3AG293600 Rh3CG229100 Rh3DG221500 Rh4AG106000 Rh4BG267700 Rh4CG062500 Rh4CG090100 Rh4CG114800 Rh5AG038400 Rh5BG395400 Rh5CG441700 Rh5CG572000 Rh6AG222400 Rh6AG264500 Rh6BG137400 Rh6BG225700 Rh6CG144300 Rh6DG087600 Rh6DG096000 Rh6DG362400 Rh6DG390200 Rh7AG207500 Rh7AG324700 Rh7AG388800 Rh7AG437100 Rh7BG019000 Rh7BG374600 Rh7CG028700 Rh7CG341500 Rh7CG408000 Rh7CG408300 Rh7DG354600
rosa_wichuraiana Rw0G009630 Rw0G012170 Rw4G022700 Rw5G028420 Rw5G029490 Rw6G007220 Rw6G007410 Rw6G017880 Rw7G012440 Rw7G021830 Rw7G027490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 931
AccB1I GGYRCC 1 cut(s) 931
AccII CGCG 1 cut(s) 973
AciI CCGC 4 cut(s) 197, 302, 682, 956
AclWI GGATC 3 cut(s) 233, 833, 846
AcoI YGGCCR 2 cut(s) 744, 942
AcsI RAATTY 4 cut(s) 787, 1102, 1190, 1274
AcuI CTGAAG 2 cut(s) 93, 149
AcyI GRCGYC 1 cut(s) 968
AfaI GTAC 1 cut(s) 933
AfiI CCNNNNNNNGG 5 cut(s) 158, 469, 560, 593, 879
AgsI TTSAA 8 cut(s) 113, 315, 445, 803, 1279, 1352, 1385, 1443
AjnI CCWGG 1 cut(s) 1026
AluBI AGCT 6 cut(s) 318, 482, 624, 766, 1139, 1370
AluI AGCT 6 cut(s) 318, 482, 624, 766, 1139, 1370
Alw26I GTCTC 5 cut(s) 121, 286, 347, 502, 585
AlwI GGATC 3 cut(s) 233, 833, 846
AoxI GGCC 3 cut(s) 524, 744, 942
ApeKI GCWGC 3 cut(s) 304, 479, 692
ApoI RAATTY 4 cut(s) 787, 1102, 1190, 1274
AseI ATTAAT 2 cut(s) 378, 609
Asp718I GGTACC 1 cut(s) 931
AspS9I GGNCC 2 cut(s) 1006, 1116
AsuC2I CCSGG 2 cut(s) 1060, 1336
AsuHPI GGTGA 4 cut(s) 145, 248, 356, 382
AsuNHI GCTAGC 1 cut(s) 620
AvaII GGWCC 2 cut(s) 1006, 1116
BalI TGGCCA 2 cut(s) 746, 944
BamHI GGATCC 1 cut(s) 838
BanI GGYRCC 1 cut(s) 931
BanII GRGCYC 1 cut(s) 107
BbvCI CCTCAGC 1 cut(s) 735
BbvI GCAGC 3 cut(s) 291, 491, 679
BccI CCATC 3 cut(s) 544, 724, 1027
BciT130I CCWGG 1 cut(s) 1028
BclI TGATCA 1 cut(s) 994
BcnI CCSGG 2 cut(s) 1060, 1336
BcoDI GTCTC 5 cut(s) 121, 286, 347, 502, 585
BfaI CTAG 2 cut(s) 621, 699
BfmI CTRYAG 2 cut(s) 717, 1257
BisI GCNGC 3 cut(s) 305, 480, 693
BlsI GCNGC 3 cut(s) 306, 481, 694
Bme1390I CCNGG 3 cut(s) 1028, 1060, 1336
Bme18I GGWCC 2 cut(s) 1006, 1116
BmgT120I GGNCC 2 cut(s) 1006, 1116
BmiI GGNNCC 3 cut(s) 840, 933, 1007
BmrFI CCNGG 3 cut(s) 1028, 1060, 1336
BmrI ACTGGG 1 cut(s) 366
BmsI GCATC 5 cut(s) 607, 619, 808, 853, 1059
BmtI GCTAGC 1 cut(s) 624
BmuI ACTGGG 1 cut(s) 366
BpmI CTGGAG 2 cut(s) 472, 1235
Bpu10I CCTNAGC 1 cut(s) 735
BpuEI CTTGAG 2 cut(s) 233, 310
BpuMI CCSGG 2 cut(s) 1060, 1336
Bsa29I ATCGAT 1 cut(s) 892
BsaHI GRCGYC 1 cut(s) 968
BsaI GGTCTC 3 cut(s) 286, 502, 585
BsaJI CCNNGG 1 cut(s) 1026
BsaXI ACNNNNNCTCC 2 cut(s) 344, 374
Bsc4I CCNNNNNNNGG 5 cut(s) 158, 469, 560, 593, 879
Bse1I ACTGG 6 cut(s) 332, 361, 439, 926, 945, 1218
BseBI CCWGG 1 cut(s) 1028
BseCI ATCGAT 1 cut(s) 892
BseDI CCNNGG 1 cut(s) 1026
BseGI GGATG 8 cut(s) 298, 571, 622, 634, 676, 868, 1213, 1276
BseLI CCNNNNNNNGG 5 cut(s) 158, 469, 560, 593, 879
BseMII CTCAG 3 cut(s) 144, 726, 824
BseNI ACTGG 6 cut(s) 332, 361, 439, 926, 945, 1218
BseRI GAGGAG 3 cut(s) 573, 1232, 1259
BseXI GCAGC 3 cut(s) 291, 491, 679
BseYI CCCAGC 3 cut(s) 318, 624, 766
BsgI GTGCAG 1 cut(s) 593
Bsh1236I CGCG 1 cut(s) 973
BshFI GGCC 3 cut(s) 526, 746, 944
BshNI GGYRCC 1 cut(s) 931
BshVI ATCGAT 1 cut(s) 892
BsiSI CCGG 3 cut(s) 842, 1060, 1336
BslFI GGGAC 1 cut(s) 79
BslI CCNNNNNNNGG 5 cut(s) 158, 469, 560, 593, 879
BsmAI GTCTC 5 cut(s) 121, 286, 347, 502, 585
BsmFI GGGAC 1 cut(s) 79
BsnI GGCC 3 cut(s) 526, 746, 944
Bso31I GGTCTC 3 cut(s) 286, 502, 585
Bsp1286I GDGCHC 1 cut(s) 107
Bsp143I GATC 5 cut(s) 238, 491, 838, 994, 1132
Bsp68I TCGCGA 1 cut(s) 973
BspACI CCGC 4 cut(s) 197, 302, 682, 956
BspANI GGCC 3 cut(s) 526, 746, 944
BspCNI CTCAG 3 cut(s) 145, 727, 825
BspDI ATCGAT 1 cut(s) 892
BspFNI CGCG 1 cut(s) 973
BspLI GGNNCC 3 cut(s) 840, 933, 1007
BspMAI CTGCAG 1 cut(s) 1261
BspOI GCTAGC 1 cut(s) 624
BspPI GGATC 3 cut(s) 233, 833, 846
BspT107I GGYRCC 1 cut(s) 931
BspTNI GGTCTC 3 cut(s) 286, 502, 585
BsrI ACTGG 6 cut(s) 332, 361, 439, 926, 945, 1218
BssECI CCNNGG 1 cut(s) 1026
BssMI GATC 5 cut(s) 238, 491, 838, 994, 1132
BssNI GRCGYC 1 cut(s) 968
Bst2UI CCWGG 1 cut(s) 1028
Bst4CI ACNGT 2 cut(s) 93, 1187
Bst6I CTCTTC 1 cut(s) 1236
BstACI GRCGYC 1 cut(s) 968
BstC8I GCNNGC 3 cut(s) 410, 622, 916
BstDEI CTNAG 5 cut(s) 153, 704, 735, 833, 878
BstF5I GGATG 8 cut(s) 298, 571, 622, 634, 676, 868, 1213, 1276
BstFNI CGCG 1 cut(s) 973
BstKTI GATC 5 cut(s) 241, 494, 841, 997, 1135
BstMAI GTCTC 5 cut(s) 121, 286, 347, 502, 585
BstMBI GATC 5 cut(s) 238, 491, 838, 994, 1132
BstMWI GCNNNNNNNGC 5 cut(s) 221, 722, 731, 911, 1376
BstNI CCWGG 1 cut(s) 1028
BstNSI RCATGY 3 cut(s) 311, 408, 993
BstSCI CCNGG 3 cut(s) 1026, 1058, 1334
BstSFI CTRYAG 2 cut(s) 717, 1257
BstUI CGCG 1 cut(s) 973
BstV1I GCAGC 3 cut(s) 291, 491, 679
BstX2I RGATCY 1 cut(s) 838
BstXI CCANNNNNNTGG 1 cut(s) 472
BstYI RGATCY 1 cut(s) 838
Bsu15I ATCGAT 1 cut(s) 892
BsuRI GGCC 3 cut(s) 526, 746, 944
BsuTUI ATCGAT 1 cut(s) 892
BtsCI GGATG 8 cut(s) 298, 571, 622, 634, 676, 868, 1213, 1276
BtsI GCAGTG 1 cut(s) 581
BtsIMutI CAGTG 4 cut(s) 140, 581, 919, 1224
BtuMI TCGCGA 1 cut(s) 973
Cac8I GCNNGC 3 cut(s) 410, 622, 916
Cfr13I GGNCC 2 cut(s) 1006, 1116
ClaI ATCGAT 1 cut(s) 892
CseI GACGC 2 cut(s) 253, 957
Csp6I GTAC 1 cut(s) 932
CspCI CAANNNNNGTGG 2 cut(s) 908, 943
CviAII CATG 5 cut(s) 308, 405, 652, 755, 990
CviQI GTAC 1 cut(s) 932
DdeI CTNAG 5 cut(s) 153, 704, 735, 833, 878
DpnI GATC 5 cut(s) 240, 493, 840, 996, 1134
DpnII GATC 5 cut(s) 238, 491, 838, 994, 1132
DraI TTTAAA 1 cut(s) 183
EaeI YGGCCR 2 cut(s) 744, 942
Eam1104I CTCTTC 1 cut(s) 1236
EarI CTCTTC 1 cut(s) 1236
EciI GGCGGA 1 cut(s) 212
Eco24I GRGCYC 1 cut(s) 107
Eco31I GGTCTC 3 cut(s) 286, 502, 585
Eco47I GGWCC 2 cut(s) 1006, 1116
Eco57I CTGAAG 2 cut(s) 93, 149
EcoRI GAATTC 2 cut(s) 787, 1274
EcoRII CCWGG 1 cut(s) 1026
EcoT22I ATGCAT 1 cut(s) 231
EcoT38I GRGCYC 1 cut(s) 107
FaeI CATG 5 cut(s) 311, 408, 655, 758, 993
FaqI GGGAC 1 cut(s) 79
FatI CATG 5 cut(s) 307, 404, 651, 754, 989
FbaI TGATCA 1 cut(s) 994
Fnu4HI GCNGC 3 cut(s) 305, 480, 693
FokI GGATG 8 cut(s) 285, 578, 629, 641, 683, 875, 1220, 1283
FriOI GRGCYC 1 cut(s) 107
Fsp4HI GCNGC 3 cut(s) 305, 480, 693
FspBI CTAG 2 cut(s) 621, 699
GluI GCNGC 3 cut(s) 305, 480, 693
GsaI CCCAGC 3 cut(s) 322, 628, 770
GsuI CTGGAG 2 cut(s) 472, 1235
HaeIII GGCC 3 cut(s) 526, 746, 944
HapII CCGG 3 cut(s) 842, 1060, 1336
HgaI GACGC 2 cut(s) 253, 957
Hin1I GRCGYC 1 cut(s) 968
Hin1II CATG 5 cut(s) 311, 408, 655, 758, 993
HincII GTYRAC 1 cut(s) 1459
HindII GTYRAC 1 cut(s) 1459
HindIII AAGCTT 1 cut(s) 1137
HinfI GANTC 5 cut(s) 200, 589, 597, 803, 809
HpaII CCGG 3 cut(s) 842, 1060, 1336
HphI GGTGA 4 cut(s) 145, 248, 356, 382
Hpy166II GTNNAC 5 cut(s) 48, 1183, 1224, 1306, 1459
Hpy188I TCNGA 6 cut(s) 129, 205, 243, 588, 808, 834
Hpy188III TCNNGA 8 cut(s) 118, 152, 426, 489, 509, 972, 1108, 1433
Hpy8I GTNNAC 5 cut(s) 48, 1183, 1224, 1306, 1459
Hpy99I CGWCG 2 cut(s) 247, 973
HpyAV CCTTC 5 cut(s) 57, 68, 124, 844, 1261
HpyCH4III ACNGT 2 cut(s) 93, 1187
HpyCH4V TGCA 9 cut(s) 229, 307, 337, 574, 632, 821, 1158, 1259, 1417
HpyF10VI GCNNNNNNNGC 5 cut(s) 221, 722, 731, 911, 1376
HpyF3I CTNAG 5 cut(s) 153, 704, 735, 833, 878
Hsp92I GRCGYC 1 cut(s) 968
Hsp92II CATG 5 cut(s) 311, 408, 655, 758, 993
KpnI GGTACC 1 cut(s) 935
Ksp22I TGATCA 1 cut(s) 994
Kzo9I GATC 5 cut(s) 238, 491, 838, 994, 1132
Lsp1109I GCAGC 3 cut(s) 291, 491, 679
LweI GCATC 5 cut(s) 607, 619, 808, 853, 1059
MaeI CTAG 2 cut(s) 621, 699
MaeIII GTNAC 1 cut(s) 138
MalI GATC 5 cut(s) 240, 493, 840, 996, 1134
MboI GATC 5 cut(s) 238, 491, 838, 994, 1132
MboII GAAGA 4 cut(s) 1014, 1253, 1364, 1376
MfeI CAATTG 1 cut(s) 1443
MflI RGATCY 1 cut(s) 838
MhlI GDGCHC 1 cut(s) 107
MlsI TGGCCA 2 cut(s) 746, 944
MluNI TGGCCA 2 cut(s) 746, 944
MlyI GAGTC 2 cut(s) 606, 803
MmeI TCCRAC 1 cut(s) 266
Mox20I TGGCCA 2 cut(s) 746, 944
Mph1103I ATGCAT 1 cut(s) 231
MscI TGGCCA 2 cut(s) 746, 944
MseI TTAA 5 cut(s) 81, 182, 378, 609, 1449
MslI CAYNNNNRTG 2 cut(s) 234, 656
Msp20I TGGCCA 2 cut(s) 746, 944
MspA1I CMGCKG 1 cut(s) 304
MspI CCGG 3 cut(s) 842, 1060, 1336
MspR9I CCNGG 3 cut(s) 1028, 1060, 1336
MunI CAATTG 1 cut(s) 1443
MvaI CCWGG 1 cut(s) 1028
MvnI CGCG 1 cut(s) 973
MwoI GCNNNNNNNGC 5 cut(s) 221, 722, 731, 911, 1376
NciI CCSGG 2 cut(s) 1060, 1336
NdeII GATC 5 cut(s) 238, 491, 838, 994, 1132
NheI GCTAGC 1 cut(s) 620
NlaIII CATG 5 cut(s) 311, 408, 655, 758, 993
NlaIV GGNNCC 3 cut(s) 840, 933, 1007
NmeAIII GCCGAG 2 cut(s) 479, 552
NmuCI GTSAC 1 cut(s) 138
NruI TCGCGA 1 cut(s) 973
NsiI ATGCAT 1 cut(s) 231
NspI RCATGY 3 cut(s) 311, 408, 993
PfeI GAWTC 3 cut(s) 200, 589, 803
PflFI GACNNNGTC 1 cut(s) 358
PkrI GCNGC 3 cut(s) 306, 481, 694
PleI GAGTC 2 cut(s) 605, 803
PpsI GAGTC 2 cut(s) 605, 803
PshBI ATTAAT 2 cut(s) 378, 609
Psp6I CCWGG 1 cut(s) 1026
PspFI CCCAGC 3 cut(s) 318, 624, 766
PspGI CCWGG 1 cut(s) 1026
PspN4I GGNNCC 3 cut(s) 840, 933, 1007
PspPI GGNCC 2 cut(s) 1006, 1116
PstI CTGCAG 1 cut(s) 1261
PsuI RGATCY 1 cut(s) 838
PsyI GACNNNGTC 1 cut(s) 358
RruI TCGCGA 1 cut(s) 973
RsaI GTAC 1 cut(s) 933
RsaNI GTAC 1 cut(s) 932
RseI CAYNNNNRTG 2 cut(s) 234, 656
SaqAI TTAA 5 cut(s) 81, 182, 378, 609, 1449
SatI GCNGC 3 cut(s) 305, 480, 693
Sau3AI GATC 5 cut(s) 238, 491, 838, 994, 1132
Sau96I GGNCC 2 cut(s) 1006, 1116
SchI GAGTC 2 cut(s) 606, 803
ScrFI CCNGG 3 cut(s) 1028, 1060, 1336
SduI GDGCHC 1 cut(s) 107
SfaNI GCATC 5 cut(s) 607, 619, 808, 853, 1059
SfcI CTRYAG 2 cut(s) 717, 1257
SinI GGWCC 2 cut(s) 1006, 1116
SmiMI CAYNNNNRTG 2 cut(s) 234, 656
SmlI CTYRAG 2 cut(s) 248, 289
SmoI CTYRAG 2 cut(s) 248, 289
SsiI CCGC 4 cut(s) 197, 302, 682, 956
SspMI CTAG 2 cut(s) 621, 699
StyD4I CCNGG 3 cut(s) 1026, 1058, 1334
TaaI ACNGT 2 cut(s) 93, 1187
TaqI TCGA 3 cut(s) 119, 816, 892
TaqII GACCGA 1 cut(s) 484
TfiI GAWTC 3 cut(s) 200, 589, 803
Tru1I TTAA 5 cut(s) 81, 182, 378, 609, 1449
Tru9I TTAA 5 cut(s) 81, 182, 378, 609, 1449
TscAI CASTG 4 cut(s) 147, 581, 926, 1231
TseFI GTSAC 1 cut(s) 138
TseI GCWGC 3 cut(s) 304, 479, 692
Tsp45I GTSAC 1 cut(s) 138
TspDTI ATGAA 6 cut(s) 38, 582, 640, 1133, 1224, 1287
TspGWI ACGGA 2 cut(s) 65, 1291
TspRI CASTG 4 cut(s) 147, 581, 926, 1231
Tth111I GACNNNGTC 1 cut(s) 358
VpaK11BI GGWCC 2 cut(s) 1006, 1116
VspI ATTAAT 2 cut(s) 378, 609
XapI RAATTY 4 cut(s) 787, 1102, 1190, 1274
XceI RCATGY 3 cut(s) 311, 408, 993
XspI CTAG 2 cut(s) 621, 699
Zsp2I ATGCAT 1 cut(s) 231
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.