Rw5G029490

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000093
Physical Location & Seq
Reverse (-)
45325276 .. 45325842
567 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G029490.1

Sequence Viewer

Length: 567 bp
ATGAAGCCTAGCCCTGCCTCCCCAAGTCAGTACCCATCCCCTGTCAGGCTAACTTGCTGGACGCCTTCGCCCCATGGTTTCTTGAAGATTAATGTGGATGCTTCCTGGAAACCCCCAAACTCGTCCGGTATTGGAGTCGTAATTCGAAACTCAGATAGATCTTTGGTATGTGCATCTTCCTCTGGATGCCGCAAAGACTCAAGCTCGGTGGAGATGGCTGAAGCTAGGGCCATCCTAGCTGGCATCAACCTAGCAATCGATCTCCACCTGGGAAACATCATTTTGGAGTCAGACTCAAAGAATTTGATTTCTAATATCACAAGCCAAACATCTAGTAAAAATTGGAGGATTTTCCCATTACTAGAGGAAATCAGGAGGAAAAGCTTTGGGTTTGAGAACATTAACTGGCATTGGACTCCTCGTGAAGCGAATCGAGCTGCGGATCATGTAGCCTCGCTTGCCCTTAGGTCGGTGGATCCTCTGAGATGGGCTTCACAGCCACCACCCTCCTTGACCATGGTTCTGCGGAGTGATGGCCTTCCATGCCCAAACTTTGAACTACTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

188

Amino Acids

20.68

Weight (kDa)

9.07

Isoelectric Point (pI)

66.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 31 - 153 1.4e-25 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000093)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G09490
fragaria_vesca FvH4_1g23791 FvH4_2g01641 FvH4_2g04612 FvH4_2g06831 FvH4_2g07841 FvH4_2g13581 FvH4_2g27220 FvH4_2g30621 FvH4_2g34753 FvH4_3g10392 FvH4_3g24291 FvH4_3g25030 FvH4_3g29361 FvH4_3g31372 FvH4_3g32402 FvH4_3g43651 FvH4_4g03830 FvH4_4g05481 FvH4_4g20431 FvH4_4g21421 FvH4_4g25931 FvH4_5g08801 FvH4_5g21021 FvH4_5g26254 FvH4_5g30931 FvH4_5g31281 FvH4_5g33581 FvH4_5g35622 FvH4_6g02100 FvH4_6g07963 FvH4_6g11620 FvH4_6g16031 FvH4_6g19041 FvH4_6g24211 FvH4_6g24271 FvH4_6g30670 FvH4_6g49540 FvH4_7g25914
malus_domestica MD03G1245200.v1.1 MD04G1168000.v1.1 MD09G1242600.v1.1 MD15G1334000.v1.1 MD17G1165700.v1.1
prunus_persica Prupe.1G073500_v2.0.a1 Prupe.1G283700_v2.0.a1 Prupe.1G524100_v2.0.a1 Prupe.2G022700_v2.0.a1 Prupe.2G022800_v2.0.a1 Prupe.2G022800_v2.0.a1 Prupe.2G044300_v2.0.a1 Prupe.2G048800_v2.0.a1 Prupe.2G092000_v2.0.a1 Prupe.2G216500_v2.0.a1 Prupe.2G216600_v2.0.a1 Prupe.2G216600_v2.0.a1 Prupe.3G103400_v2.0.a1 Prupe.3G143300_v2.0.a1 Prupe.3G190000_v2.0.a1 Prupe.3G219800_v2.0.a1 Prupe.4G177800_v2.0.a1 Prupe.4G261300_v2.0.a1 Prupe.5G044600_v2.0.a1 Prupe.5G067400_v2.0.a1 Prupe.7G083900_v2.0.a1 Prupe.7G120900_v2.0.a1 Prupe.8G032200_v2.0.a1 Prupe.8G036100_v2.0.a1 Prupe.8G042700_v2.0.a1
pyrus_communis pycom01g21710 pycom02g19770 pycom03g05120 pycom05g01370 pycom05g08780 pycom05g10120 pycom07g01370 pycom07g05930 pycom08g15760 pycom08g18090 pycom08g21060 pycom09g03880 pycom10g03870 pycom13g22240 pycom16g05120 pycom16g17170 pycom17g12180 pycom17g16290 pycom17g21230 pycom17g24990 pycom215g00100
rosa_chinensis RchiOBHm_Chr1g0323031 RchiOBHm_Chr1g0324391 RchiOBHm_Chr1g0326401 RchiOBHm_Chr1g0327811 RchiOBHm_Chr1g0332521 RchiOBHm_Chr1g0336501 RchiOBHm_Chr1g0346021 RchiOBHm_Chr1g0347191 RchiOBHm_Chr1g0367181 RchiOBHm_Chr2g0089441 RchiOBHm_Chr2g0115441 RchiOBHm_Chr3g0490691 RchiOBHm_Chr4g0395251 RchiOBHm_Chr4g0398081 RchiOBHm_Chr4g0409451 RchiOBHm_Chr4g0413041 RchiOBHm_Chr4g0415471 RchiOBHm_Chr4g0420961 RchiOBHm_Chr5g0040301 RchiOBHm_Chr5g0070651 RchiOBHm_Chr6g0263011 RchiOBHm_Chr6g0270721 RchiOBHm_Chr6g0277111 RchiOBHm_Chr7g0179771 RchiOBHm_Chr7g0223051 RchiOBHm_Chr7g0225031 RchiOBHm_Chr7g0225091
rosa_laevigata RLG00000001668 RLG00000001672 RLG00000001676 RLG00000007762 RLG00000008994 RLG00000011117 RLG00000013729 RLG00000013839 RLG00000014759 RLG00000016638 RLG00000018535 RLG00000018614 RLG00000018646 RLG00000020679 RLG00000023337 RLG00000029348 RLG00000035891 RLG00000035912
rosa_multiflora Rmu_co8152500.1_g000001 Rmu_co8203314.1_g000001 Rmu_co8383183.1_g000001 Rmu_sc0000293.1_g000033 Rmu_sc0000367.1_g000226 Rmu_sc0000512.1_g000023 Rmu_sc0000594.1_g000059 Rmu_sc0000654.1_g000022 Rmu_sc0000654.1_g000047 Rmu_sc0000706.1_g000037 Rmu_sc0001348.1_g000008 Rmu_sc0001385.1_g000024 Rmu_sc0001405.1_g000002 Rmu_sc0001521.1_g000048 Rmu_sc0001932.1_g000008 Rmu_sc0001932.1_g000009 Rmu_sc0002535.1_g000011 Rmu_sc0002908.1_g000019 Rmu_sc0003709.1_g000004 Rmu_sc0003882.1_g000054 Rmu_sc0004035.1_g000007 Rmu_sc0004041.1_g000007 Rmu_sc0004288.1_g000011 Rmu_sc0004569.1_g000004 Rmu_sc0004677.1_g000016 Rmu_sc0004834.1_g000010 Rmu_sc0005193.1_g000008 Rmu_sc0005354.1_g000009 Rmu_sc0006514.1_g000021 Rmu_sc0006691.1_g000001 Rmu_sc0006888.1_g000021 Rmu_sc0006889.1_g000013 Rmu_sc0008096.1_g000017 Rmu_sc0008378.1_g000003 Rmu_sc0009127.1_g000005 Rmu_sc0009191.1_g000016 Rmu_sc0009687.1_g000018 Rmu_sc0009709.1_g000005 Rmu_sc0009880.1_g000015 Rmu_sc0011710.1_g000001 Rmu_sc0012615.1_g000004 Rmu_sc0016091.1_g000002 Rmu_sc0022339.1_g000006 Rmu_sc0026537.1_g000002 Rmu_sc0027689.1_g000002 Rmu_sc0036222.1_g000001 Rmu_sc0040890.1_g000001 Rmu_ssc0000148.1_g000006 Rmu_ssc0000151.1_g000017 Rmu_ssc0000404.1_g000018 Rmu_ssc0000449.1_g000009
rosa_roxburghii Rroxscaffold_1G00017760 Rroxscaffold_1G00059150 Rroxscaffold_2G00142560 Rroxscaffold_3G00220440 Rroxscaffold_3G00231700 Rroxscaffold_3G00232400 Rroxscaffold_3G00274510 Rroxscaffold_4G00288790 Rroxscaffold_4G00305680 Rroxscaffold_4G00314880 Rroxscaffold_4G00314900 Rroxscaffold_5G00334590 Rroxscaffold_6G00394110 Rroxscaffold_6G00415860 Rroxscaffold_7G00168240 Rroxscaffold_7G00204400 Rroxscaffold_7G00207840
rosa_rugosa Rorug01G0034900 Rorug02G0079500 Rorug02G0229000 Rorug02G0229100 Rorug02G0291400 Rorug02G0298800 Rorug03G0046400 Rorug03G0064700 Rorug03G0077300 Rorug03G0199000 Rorug03G0200400 Rorug04G0205200 Rorug05G0025400 Rorug05G0127400 Rorug05G0192100 Rorug05G0453400 Rorug05G0538300 Rorug06G0035200 Rorug06G0241000 Rorug06G0268300 Rorug07G0120300 Rorug07G0145000 Rorug07G0209100 Rorug07G0240500 Rorug07G0271700
rosa_samantha Rh1AG179100 Rh1BG106900 Rh1BG163400 Rh1BG163500 Rh1BG323500 Rh2CG447900 Rh2DG503700 Rh3AG293600 Rh3CG229100 Rh3DG221500 Rh4AG106000 Rh4BG267700 Rh4CG062500 Rh4CG090100 Rh4CG114800 Rh5AG038400 Rh5BG395400 Rh5CG441700 Rh5CG572000 Rh6AG222400 Rh6AG264500 Rh6BG137400 Rh6BG225700 Rh6CG144300 Rh6DG087600 Rh6DG096000 Rh6DG362400 Rh6DG390200 Rh7AG207500 Rh7AG324700 Rh7AG388800 Rh7AG437100 Rh7BG019000 Rh7BG374600 Rh7CG028700 Rh7CG341500 Rh7CG408000 Rh7CG408300 Rh7DG354600
rosa_wichuraiana Rw0G009630 Rw0G012170 Rw4G022700 Rw5G028420 Rw5G029490 Rw6G007220 Rw6G007410 Rw6G017880 Rw7G012440 Rw7G021830 Rw7G027490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 190, 440, 526
AclWI GGATC 3 cut(s) 450, 470, 483
AcsI RAATTY 1 cut(s) 301
AcuI CTGAAG 1 cut(s) 240
AcyI GRCGYC 1 cut(s) 62
AfaI GTAC 1 cut(s) 32
AfiI CCNNNNNNNGG 2 cut(s) 45, 469
AgsI TTSAA 2 cut(s) 85, 557
AjnI CCWGG 2 cut(s) 104, 267
AluBI AGCT 5 cut(s) 204, 224, 239, 384, 437
AluI AGCT 5 cut(s) 204, 224, 239, 384, 437
AlwI GGATC 3 cut(s) 450, 470, 483
AoxI GGCC 2 cut(s) 228, 535
ApeKI GCWGC 1 cut(s) 437
ApoI RAATTY 1 cut(s) 301
AseI ATTAAT 1 cut(s) 90
AspS9I GGNCC 1 cut(s) 228
AsuII TTCGAA 1 cut(s) 145
AxyI CCTNAGG 1 cut(s) 464
BamHI GGATCC 1 cut(s) 475
BauI CACGAG 1 cut(s) 420
BbvI GCAGC 1 cut(s) 424
BccI CCATC 5 cut(s) 43, 208, 239, 480, 527
BciT130I CCWGG 2 cut(s) 106, 269
BfaI CTAG 6 cut(s) 9, 225, 236, 251, 333, 362
BglII AGATCT 1 cut(s) 158
BisI GCNGC 2 cut(s) 190, 438
BlsI GCNGC 2 cut(s) 191, 439
Bme1390I CCNGG 2 cut(s) 106, 269
BmgT120I GGNCC 1 cut(s) 228
BmiI GGNNCC 1 cut(s) 477
BmrFI CCNGG 2 cut(s) 106, 269
BmsI GCATC 4 cut(s) 88, 176, 182, 252
BplI GAGNNNNNCTC 2 cut(s) 278, 310
Bpu14I TTCGAA 1 cut(s) 145
BpuEI CTTGAG 1 cut(s) 184
Bsa29I ATCGAT 1 cut(s) 258
BsaHI GRCGYC 1 cut(s) 62
BsaJI CCNNGG 3 cut(s) 73, 268, 516
BsaWI WCCGGW 1 cut(s) 125
Bsc4I CCNNNNNNNGG 2 cut(s) 45, 469
Bse1I ACTGG 1 cut(s) 410
Bse21I CCTNAGG 1 cut(s) 464
BseBI CCWGG 2 cut(s) 106, 269
BseCI ATCGAT 1 cut(s) 258
BseDI CCNNGG 3 cut(s) 73, 268, 516
BseGI GGATG 4 cut(s) 35, 103, 191, 231
BseLI CCNNNNNNNGG 2 cut(s) 45, 469
BseMII CTCAG 2 cut(s) 165, 473
BseNI ACTGG 1 cut(s) 410
BseRI GAGGAG 1 cut(s) 408
BseXI GCAGC 1 cut(s) 424
BshFI GGCC 2 cut(s) 230, 537
BshVI ATCGAT 1 cut(s) 258
BsiSI CCGG 1 cut(s) 126
BslI CCNNNNNNNGG 2 cut(s) 45, 469
BsnI GGCC 2 cut(s) 230, 537
Bsp119I TTCGAA 1 cut(s) 145
Bsp143I GATC 4 cut(s) 158, 259, 442, 475
Bsp19I CCATGG 2 cut(s) 73, 516
BspACI CCGC 3 cut(s) 190, 440, 526
BspANI GGCC 2 cut(s) 230, 537
BspCNI CTCAG 2 cut(s) 164, 474
BspDI ATCGAT 1 cut(s) 258
BspLI GGNNCC 1 cut(s) 477
BspPI GGATC 3 cut(s) 450, 470, 483
BspT104I TTCGAA 1 cut(s) 145
BsrI ACTGG 1 cut(s) 410
BssECI CCNNGG 3 cut(s) 73, 268, 516
BssMI GATC 4 cut(s) 158, 259, 442, 475
BssNI GRCGYC 1 cut(s) 62
BssSI CACGAG 1 cut(s) 420
BssT1I CCWWGG 2 cut(s) 73, 516
Bst2BI CACGAG 1 cut(s) 420
Bst2UI CCWGG 2 cut(s) 106, 269
BstACI GRCGYC 1 cut(s) 62
BstBI TTCGAA 1 cut(s) 145
BstC8I GCNNGC 2 cut(s) 241, 459
BstDEI CTNAG 3 cut(s) 151, 464, 482
BstDSI CCRYGG 2 cut(s) 73, 516
BstF5I GGATG 4 cut(s) 35, 103, 191, 231
BstKTI GATC 4 cut(s) 161, 262, 445, 478
BstMBI GATC 4 cut(s) 158, 259, 442, 475
BstMWI GCNNNNNNNGC 4 cut(s) 236, 434, 458, 543
BstNI CCWGG 2 cut(s) 106, 269
BstSCI CCNGG 2 cut(s) 104, 267
BstV1I GCAGC 1 cut(s) 424
BstX2I RGATCY 2 cut(s) 158, 475
BstYI RGATCY 2 cut(s) 158, 475
Bsu15I ATCGAT 1 cut(s) 258
Bsu36I CCTNAGG 1 cut(s) 464
BsuRI GGCC 2 cut(s) 230, 537
BsuTUI ATCGAT 1 cut(s) 258
BtgI CCRYGG 2 cut(s) 73, 516
BtsCI GGATG 4 cut(s) 35, 103, 191, 231
Cac8I GCNNGC 2 cut(s) 241, 459
Cfr13I GGNCC 1 cut(s) 228
ClaI ATCGAT 1 cut(s) 258
CseI GACGC 1 cut(s) 70
Csp6I GTAC 1 cut(s) 31
CspCI CAANNNNNGTGG 4 cut(s) 189, 224, 492, 527
CviAII CATG 4 cut(s) 74, 446, 517, 543
CviQI GTAC 1 cut(s) 31
DdeI CTNAG 3 cut(s) 151, 464, 482
DpnI GATC 4 cut(s) 160, 261, 444, 477
DpnII GATC 4 cut(s) 158, 259, 442, 475
Eco130I CCWWGG 2 cut(s) 73, 516
Eco57I CTGAAG 1 cut(s) 240
Eco81I CCTNAGG 1 cut(s) 464
EcoRII CCWGG 2 cut(s) 104, 267
EcoT14I CCWWGG 2 cut(s) 73, 516
ErhI CCWWGG 2 cut(s) 73, 516
FaeI CATG 4 cut(s) 77, 449, 520, 546
FaiI YATR 6 cut(s) 75, 169, 447, 518, 544, 565
FatI CATG 4 cut(s) 73, 445, 516, 542
Fnu4HI GCNGC 2 cut(s) 190, 438
FokI GGATG 4 cut(s) 22, 110, 198, 218
Fsp4HI GCNGC 2 cut(s) 190, 438
FspBI CTAG 6 cut(s) 9, 225, 236, 251, 333, 362
GluI GCNGC 2 cut(s) 190, 438
HaeIII GGCC 2 cut(s) 230, 537
HapII CCGG 1 cut(s) 126
HgaI GACGC 1 cut(s) 70
Hin1I GRCGYC 1 cut(s) 62
Hin1II CATG 4 cut(s) 77, 449, 520, 546
HindIII AAGCTT 1 cut(s) 382
HinfI GANTC 6 cut(s) 135, 197, 287, 293, 415, 430
HpaII CCGG 1 cut(s) 126
Hpy188I TCNGA 3 cut(s) 154, 292, 483
Hpy188III TCNNGA 4 cut(s) 82, 183, 373, 422
HpyAV CCTTC 2 cut(s) 75, 548
HpyCH4V TGCA 1 cut(s) 173
HpyF10VI GCNNNNNNNGC 4 cut(s) 236, 434, 458, 543
HpyF3I CTNAG 3 cut(s) 151, 464, 482
Hsp92I GRCGYC 1 cut(s) 62
Hsp92II CATG 4 cut(s) 77, 449, 520, 546
Kzo9I GATC 4 cut(s) 158, 259, 442, 475
Lsp1109I GCAGC 1 cut(s) 424
LweI GCATC 4 cut(s) 88, 176, 182, 252
MaeI CTAG 6 cut(s) 9, 225, 236, 251, 333, 362
MalI GATC 4 cut(s) 160, 261, 444, 477
MboI GATC 4 cut(s) 158, 259, 442, 475
MboII GAAGA 2 cut(s) 97, 168
MflI RGATCY 2 cut(s) 158, 475
MluCI AATT 3 cut(s) 141, 301, 340
MlyI GAGTC 5 cut(s) 144, 191, 287, 296, 409
MnlI CCTC 9 cut(s) 28, 190, 339, 358, 369, 429, 463, 489, 517
MseI TTAA 2 cut(s) 90, 402
MspI CCGG 1 cut(s) 126
MspR9I CCNGG 2 cut(s) 106, 269
MvaI CCWGG 2 cut(s) 106, 269
MwoI GCNNNNNNNGC 4 cut(s) 236, 434, 458, 543
NcoI CCATGG 2 cut(s) 73, 516
NdeII GATC 4 cut(s) 158, 259, 442, 475
NlaIII CATG 4 cut(s) 77, 449, 520, 546
NlaIV GGNNCC 1 cut(s) 477
NspV TTCGAA 1 cut(s) 145
PfeI GAWTC 1 cut(s) 430
PfoI TCCNGGA 1 cut(s) 104
PkrI GCNGC 2 cut(s) 191, 439
PleI GAGTC 5 cut(s) 143, 191, 287, 295, 409
PpsI GAGTC 5 cut(s) 143, 191, 287, 295, 409
PshBI ATTAAT 1 cut(s) 90
Psp6I CCWGG 2 cut(s) 104, 267
PspGI CCWGG 2 cut(s) 104, 267
PspN4I GGNNCC 1 cut(s) 477
PspPI GGNCC 1 cut(s) 228
PsuI RGATCY 2 cut(s) 158, 475
RsaI GTAC 1 cut(s) 32
RsaNI GTAC 1 cut(s) 31
SaqAI TTAA 2 cut(s) 90, 402
SatI GCNGC 2 cut(s) 190, 438
Sau3AI GATC 4 cut(s) 158, 259, 442, 475
Sau96I GGNCC 1 cut(s) 228
SchI GAGTC 5 cut(s) 144, 191, 287, 296, 409
ScrFI CCNGG 2 cut(s) 106, 269
SetI ASST 8 cut(s) 206, 226, 241, 252, 270, 386, 439, 470
SfaNI GCATC 4 cut(s) 88, 176, 182, 252
SfuI TTCGAA 1 cut(s) 145
SmlI CTYRAG 1 cut(s) 199
SmoI CTYRAG 1 cut(s) 199
Sse9I AATT 3 cut(s) 141, 301, 340
SsiI CCGC 3 cut(s) 190, 440, 526
SspMI CTAG 6 cut(s) 9, 225, 236, 251, 333, 362
StyD4I CCNGG 2 cut(s) 104, 267
StyI CCWWGG 2 cut(s) 73, 516
TaqI TCGA 3 cut(s) 145, 258, 433
TasI AATT 3 cut(s) 141, 301, 340
TauI GCSGC 1 cut(s) 192
TfiI GAWTC 1 cut(s) 430
Tru1I TTAA 2 cut(s) 90, 402
Tru9I TTAA 2 cut(s) 90, 402
TseI GCWGC 1 cut(s) 437
TspDTI ATGAA 1 cut(s) 17
VspI ATTAAT 1 cut(s) 90
XapI RAATTY 1 cut(s) 301
XspI CTAG 6 cut(s) 9, 225, 236, 251, 333, 362
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.