Prupe.7G083900_v2.0.a1

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0000093
Physical Location & Seq
Forward (+)
11946836 .. 11947426
591 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G083900.1

Sequence Viewer

Length: 408 bp
ATGAGGAATCATAATAAGGATTTCTGCTATGGTTTTGCTAGTAAACGATGTTGTAATAGTGCACTGAATGCAGAAACTGAAGCAGCTATCGAGGCTCTAAGATGCGCAAGTTTGAGAGGTTACTCAAAGATAGAGATGGAATCAGACTCAAAAGTCCTCATCGATAATATCAAAGGTAATGTATGCACGAAGGCCTGGACCATTCTCCCTTTGCTTGATGAGATCAGACGCCTAAGTGCAAGGTTCTCTGACGTGGAATGGTGTTGGATCCCTCGTGGTGCAAATCGCGCCGCTCACGTGACGGCGGCGATAGGATTAAGGGCGGTGTGTCCGCAAGGATGGGCTAATCAGCCACCTCCGTCCCTGGTGCGGGTTCTGGCTTCTGATGGACTTCCTAGTCCCCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

136

Amino Acids

14.84

Weight (kDa)

8.76

Isoelectric Point (pI)

51.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000093)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G09490
fragaria_vesca FvH4_1g23791 FvH4_2g01641 FvH4_2g04612 FvH4_2g06831 FvH4_2g07841 FvH4_2g13581 FvH4_2g27220 FvH4_2g30621 FvH4_2g34753 FvH4_3g10392 FvH4_3g24291 FvH4_3g25030 FvH4_3g29361 FvH4_3g31372 FvH4_3g32402 FvH4_3g43651 FvH4_4g03830 FvH4_4g05481 FvH4_4g20431 FvH4_4g21421 FvH4_4g25931 FvH4_5g08801 FvH4_5g21021 FvH4_5g26254 FvH4_5g30931 FvH4_5g31281 FvH4_5g33581 FvH4_5g35622 FvH4_6g02100 FvH4_6g07963 FvH4_6g11620 FvH4_6g16031 FvH4_6g19041 FvH4_6g24211 FvH4_6g24271 FvH4_6g30670 FvH4_6g49540 FvH4_7g25914
malus_domestica MD03G1245200.v1.1 MD04G1168000.v1.1 MD09G1242600.v1.1 MD15G1334000.v1.1 MD17G1165700.v1.1
prunus_persica Prupe.1G073500_v2.0.a1 Prupe.1G283700_v2.0.a1 Prupe.1G524100_v2.0.a1 Prupe.2G022700_v2.0.a1 Prupe.2G022800_v2.0.a1 Prupe.2G022800_v2.0.a1 Prupe.2G044300_v2.0.a1 Prupe.2G048800_v2.0.a1 Prupe.2G092000_v2.0.a1 Prupe.2G216500_v2.0.a1 Prupe.2G216600_v2.0.a1 Prupe.2G216600_v2.0.a1 Prupe.3G103400_v2.0.a1 Prupe.3G143300_v2.0.a1 Prupe.3G190000_v2.0.a1 Prupe.3G219800_v2.0.a1 Prupe.4G177800_v2.0.a1 Prupe.4G261300_v2.0.a1 Prupe.5G044600_v2.0.a1 Prupe.5G067400_v2.0.a1 Prupe.7G083900_v2.0.a1 Prupe.7G120900_v2.0.a1 Prupe.8G032200_v2.0.a1 Prupe.8G036100_v2.0.a1 Prupe.8G042700_v2.0.a1
pyrus_communis pycom01g21710 pycom02g19770 pycom03g05120 pycom05g01370 pycom05g08780 pycom05g10120 pycom07g01370 pycom07g05930 pycom08g15760 pycom08g18090 pycom08g21060 pycom09g03880 pycom10g03870 pycom13g22240 pycom16g05120 pycom16g17170 pycom17g12180 pycom17g16290 pycom17g21230 pycom17g24990 pycom215g00100
rosa_chinensis RchiOBHm_Chr1g0323031 RchiOBHm_Chr1g0324391 RchiOBHm_Chr1g0326401 RchiOBHm_Chr1g0327811 RchiOBHm_Chr1g0332521 RchiOBHm_Chr1g0336501 RchiOBHm_Chr1g0346021 RchiOBHm_Chr1g0347191 RchiOBHm_Chr1g0367181 RchiOBHm_Chr2g0089441 RchiOBHm_Chr2g0115441 RchiOBHm_Chr3g0490691 RchiOBHm_Chr4g0395251 RchiOBHm_Chr4g0398081 RchiOBHm_Chr4g0409451 RchiOBHm_Chr4g0413041 RchiOBHm_Chr4g0415471 RchiOBHm_Chr4g0420961 RchiOBHm_Chr5g0040301 RchiOBHm_Chr5g0070651 RchiOBHm_Chr6g0263011 RchiOBHm_Chr6g0270721 RchiOBHm_Chr6g0277111 RchiOBHm_Chr7g0179771 RchiOBHm_Chr7g0223051 RchiOBHm_Chr7g0225031 RchiOBHm_Chr7g0225091
rosa_laevigata RLG00000001668 RLG00000001672 RLG00000001676 RLG00000007762 RLG00000008994 RLG00000011117 RLG00000013729 RLG00000013839 RLG00000014759 RLG00000016638 RLG00000018535 RLG00000018614 RLG00000018646 RLG00000020679 RLG00000023337 RLG00000029348 RLG00000035891 RLG00000035912
rosa_multiflora Rmu_co8152500.1_g000001 Rmu_co8203314.1_g000001 Rmu_co8383183.1_g000001 Rmu_sc0000293.1_g000033 Rmu_sc0000367.1_g000226 Rmu_sc0000512.1_g000023 Rmu_sc0000594.1_g000059 Rmu_sc0000654.1_g000022 Rmu_sc0000654.1_g000047 Rmu_sc0000706.1_g000037 Rmu_sc0001348.1_g000008 Rmu_sc0001385.1_g000024 Rmu_sc0001405.1_g000002 Rmu_sc0001521.1_g000048 Rmu_sc0001932.1_g000008 Rmu_sc0001932.1_g000009 Rmu_sc0002535.1_g000011 Rmu_sc0002908.1_g000019 Rmu_sc0003709.1_g000004 Rmu_sc0003882.1_g000054 Rmu_sc0004035.1_g000007 Rmu_sc0004041.1_g000007 Rmu_sc0004288.1_g000011 Rmu_sc0004569.1_g000004 Rmu_sc0004677.1_g000016 Rmu_sc0004834.1_g000010 Rmu_sc0005193.1_g000008 Rmu_sc0005354.1_g000009 Rmu_sc0006514.1_g000021 Rmu_sc0006691.1_g000001 Rmu_sc0006888.1_g000021 Rmu_sc0006889.1_g000013 Rmu_sc0008096.1_g000017 Rmu_sc0008378.1_g000003 Rmu_sc0009127.1_g000005 Rmu_sc0009191.1_g000016 Rmu_sc0009687.1_g000018 Rmu_sc0009709.1_g000005 Rmu_sc0009880.1_g000015 Rmu_sc0011710.1_g000001 Rmu_sc0012615.1_g000004 Rmu_sc0016091.1_g000002 Rmu_sc0022339.1_g000006 Rmu_sc0026537.1_g000002 Rmu_sc0027689.1_g000002 Rmu_sc0036222.1_g000001 Rmu_sc0040890.1_g000001 Rmu_ssc0000148.1_g000006 Rmu_ssc0000151.1_g000017 Rmu_ssc0000404.1_g000018 Rmu_ssc0000449.1_g000009
rosa_roxburghii Rroxscaffold_1G00017760 Rroxscaffold_1G00059150 Rroxscaffold_2G00142560 Rroxscaffold_3G00220440 Rroxscaffold_3G00231700 Rroxscaffold_3G00232400 Rroxscaffold_3G00274510 Rroxscaffold_4G00288790 Rroxscaffold_4G00305680 Rroxscaffold_4G00314880 Rroxscaffold_4G00314900 Rroxscaffold_5G00334590 Rroxscaffold_6G00394110 Rroxscaffold_6G00415860 Rroxscaffold_7G00168240 Rroxscaffold_7G00204400 Rroxscaffold_7G00207840
rosa_rugosa Rorug01G0034900 Rorug02G0079500 Rorug02G0229000 Rorug02G0229100 Rorug02G0291400 Rorug02G0298800 Rorug03G0046400 Rorug03G0064700 Rorug03G0077300 Rorug03G0199000 Rorug03G0200400 Rorug04G0205200 Rorug05G0025400 Rorug05G0127400 Rorug05G0192100 Rorug05G0453400 Rorug05G0538300 Rorug06G0035200 Rorug06G0241000 Rorug06G0268300 Rorug07G0120300 Rorug07G0145000 Rorug07G0209100 Rorug07G0240500 Rorug07G0271700
rosa_samantha Rh1AG179100 Rh1BG106900 Rh1BG163400 Rh1BG163500 Rh1BG323500 Rh2CG447900 Rh2DG503700 Rh3AG293600 Rh3CG229100 Rh3DG221500 Rh4AG106000 Rh4BG267700 Rh4CG062500 Rh4CG090100 Rh4CG114800 Rh5AG038400 Rh5BG395400 Rh5CG441700 Rh5CG572000 Rh6AG222400 Rh6AG264500 Rh6BG137400 Rh6BG225700 Rh6CG144300 Rh6DG087600 Rh6DG096000 Rh6DG362400 Rh6DG390200 Rh7AG207500 Rh7AG324700 Rh7AG388800 Rh7AG437100 Rh7BG019000 Rh7BG374600 Rh7CG028700 Rh7CG341500 Rh7CG408000 Rh7CG408300 Rh7DG354600
rosa_wichuraiana Rw0G009630 Rw0G012170 Rw4G022700 Rw5G028420 Rw5G029490 Rw6G007220 Rw6G007410 Rw6G017880 Rw7G012440 Rw7G021830 Rw7G027490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 152, 396
Acc16I TGCGCA 1 cut(s) 106
AccBSI CCGCTC 1 cut(s) 293
AccII CGCG 1 cut(s) 288
AciI CCGC 5 cut(s) 291, 305, 323, 332, 370
AclWI GGATC 2 cut(s) 262, 275
AcuI CTGAAG 1 cut(s) 99
AcvI CACGTG 1 cut(s) 298
AcyI GRCGYC 1 cut(s) 229
AfiI CCNNNNNNNGG 2 cut(s) 369, 370
AjiI CACGTC 1 cut(s) 253
AjnI CCWGG 2 cut(s) 194, 363
AluBI AGCT 1 cut(s) 86
AluI AGCT 1 cut(s) 86
Alw21I GWGCWC 1 cut(s) 64
Alw44I GTGCAC 1 cut(s) 60
AlwI GGATC 2 cut(s) 262, 275
AlwNI CAGNNNCTG 1 cut(s) 77
AoxI GGCC 1 cut(s) 192
ApaLI GTGCAC 1 cut(s) 60
ApeKI GCWGC 1 cut(s) 83
AspLEI GCGC 2 cut(s) 107, 290
AspS9I GGNCC 1 cut(s) 198
AvaII GGWCC 1 cut(s) 198
BaeGI GKGCMC 1 cut(s) 64
BamHI GGATCC 1 cut(s) 267
BauI CACGAG 1 cut(s) 273
BbrPI CACGTG 1 cut(s) 298
Bbv12I GWGCWC 1 cut(s) 64
BbvI GCAGC 1 cut(s) 95
BccI CCATC 3 cut(s) 130, 333, 380
BceAI ACGGC 1 cut(s) 318
BciT130I CCWGG 2 cut(s) 196, 365
BfaI CTAG 2 cut(s) 39, 396
BisI GCNGC 3 cut(s) 84, 291, 306
BlsI GCNGC 3 cut(s) 85, 292, 307
Bme1390I CCNGG 2 cut(s) 196, 365
Bme18I GGWCC 1 cut(s) 198
BmgBI CACGTC 1 cut(s) 253
BmgT120I GGNCC 1 cut(s) 198
BmiI GGNNCC 1 cut(s) 269
BmrFI CCNGG 2 cut(s) 196, 365
BmsI GCATC 1 cut(s) 92
Bsa29I ATCGAT 1 cut(s) 162
BsaAI YACGTR 1 cut(s) 298
BsaHI GRCGYC 1 cut(s) 229
BsaJI CCNNGG 1 cut(s) 363
Bsc4I CCNNNNNNNGG 2 cut(s) 369, 370
BseBI CCWGG 2 cut(s) 196, 365
BseCI ATCGAT 1 cut(s) 162
BseDI CCNNGG 1 cut(s) 363
BseGI GGATG 1 cut(s) 344
BseLI CCNNNNNNNGG 2 cut(s) 369, 370
BseSI GKGCMC 1 cut(s) 64
BseXI GCAGC 1 cut(s) 95
Bsh1236I CGCG 1 cut(s) 288
BshFI GGCC 1 cut(s) 194
BshVI ATCGAT 1 cut(s) 162
BsiHKAI GWGCWC 1 cut(s) 64
BslFI GGGAC 2 cut(s) 346, 384
BslI CCNNNNNNNGG 2 cut(s) 369, 370
BsmFI GGGAC 2 cut(s) 346, 384
BsmI GAATGC 1 cut(s) 73
BsnI GGCC 1 cut(s) 194
Bsp1286I GDGCHC 1 cut(s) 64
Bsp143I GATC 2 cut(s) 222, 267
BspACI CCGC 5 cut(s) 291, 305, 323, 332, 370
BspANI GGCC 1 cut(s) 194
BspDI ATCGAT 1 cut(s) 162
BspFNI CGCG 1 cut(s) 288
BspLI GGNNCC 1 cut(s) 269
BspPI GGATC 2 cut(s) 262, 275
BsrBI CCGCTC 1 cut(s) 293
BssECI CCNNGG 1 cut(s) 363
BssMI GATC 2 cut(s) 222, 267
BssNI GRCGYC 1 cut(s) 229
BssSI CACGAG 1 cut(s) 273
Bst2BI CACGAG 1 cut(s) 273
Bst2UI CCWGG 2 cut(s) 196, 365
BstACI GRCGYC 1 cut(s) 229
BstAPI GCANNNNNTGC 1 cut(s) 68
BstBAI YACGTR 1 cut(s) 298
BstDEI CTNAG 2 cut(s) 98, 233
BstF5I GGATG 1 cut(s) 344
BstFNI CGCG 1 cut(s) 288
BstHHI GCGC 2 cut(s) 107, 290
BstKTI GATC 2 cut(s) 225, 270
BstMBI GATC 2 cut(s) 222, 267
BstMWI GCNNNNNNNGC 3 cut(s) 68, 92, 287
BstNI CCWGG 2 cut(s) 196, 365
BstSCI CCNGG 2 cut(s) 194, 363
BstSLI GKGCMC 1 cut(s) 64
BstUI CGCG 1 cut(s) 288
BstV1I GCAGC 1 cut(s) 95
BstX2I RGATCY 1 cut(s) 267
BstYI RGATCY 1 cut(s) 267
Bsu15I ATCGAT 1 cut(s) 162
BsuRI GGCC 1 cut(s) 194
BsuTUI ATCGAT 1 cut(s) 162
BtrI CACGTC 1 cut(s) 253
BtsCI GGATG 1 cut(s) 344
BtsIMutI CAGTG 1 cut(s) 62
CaiI CAGNNNCTG 1 cut(s) 77
CfoI GCGC 2 cut(s) 107, 290
Cfr13I GGNCC 1 cut(s) 198
ClaI ATCGAT 1 cut(s) 162
CseI GACGC 1 cut(s) 237
CviJI RGCY 6 cut(s) 86, 95, 194, 344, 352, 380
CviKI_1 RGCY 6 cut(s) 86, 95, 194, 344, 352, 380
DdeI CTNAG 2 cut(s) 98, 233
DpnI GATC 2 cut(s) 224, 269
DpnII GATC 2 cut(s) 222, 267
DrdI GACNNNNNNGTC 2 cut(s) 152, 396
DseDI GACNNNNNNGTC 2 cut(s) 152, 396
Eco147I AGGCCT 1 cut(s) 194
Eco47I GGWCC 1 cut(s) 198
Eco57I CTGAAG 1 cut(s) 99
Eco72I CACGTG 1 cut(s) 298
EcoRII CCWGG 2 cut(s) 194, 363
FaiI YATR 3 cut(s) 12, 30, 184
FaqI GGGAC 2 cut(s) 346, 384
FauI CCCGC 1 cut(s) 363
Fnu4HI GCNGC 3 cut(s) 84, 291, 306
FokI GGATG 1 cut(s) 351
Fsp4HI GCNGC 3 cut(s) 84, 291, 306
FspBI CTAG 2 cut(s) 39, 396
FspI TGCGCA 1 cut(s) 106
GlaI GCGC 2 cut(s) 106, 289
GluI GCNGC 3 cut(s) 84, 291, 306
HaeIII GGCC 1 cut(s) 194
HgaI GACGC 1 cut(s) 237
HhaI GCGC 2 cut(s) 107, 290
Hin1I GRCGYC 1 cut(s) 229
Hin6I GCGC 2 cut(s) 105, 288
HinP1I GCGC 2 cut(s) 105, 288
HinfI GANTC 3 cut(s) 7, 140, 146
Hpy166II GTNNAC 2 cut(s) 44, 62
Hpy188I TCNGA 4 cut(s) 145, 227, 250, 385
Hpy8I GTNNAC 2 cut(s) 44, 62
HpyAV CCTTC 1 cut(s) 184
HpyCH4IV ACGT 2 cut(s) 252, 297
HpyCH4V TGCA 5 cut(s) 62, 71, 186, 239, 281
HpyF10VI GCNNNNNNNGC 3 cut(s) 68, 92, 287
HpyF3I CTNAG 2 cut(s) 98, 233
HpySE526I ACGT 2 cut(s) 252, 297
Hsp92I GRCGYC 1 cut(s) 229
HspAI GCGC 2 cut(s) 105, 288
Kzo9I GATC 2 cut(s) 222, 267
LpnPI CCDG 5 cut(s) 181, 208, 350, 362, 377
Lsp1109I GCAGC 1 cut(s) 95
LweI GCATC 1 cut(s) 92
MaeI CTAG 2 cut(s) 39, 396
MaeII ACGT 2 cut(s) 252, 297
MaeIII GTNAC 2 cut(s) 119, 298
MalI GATC 2 cut(s) 224, 269
MbiI CCGCTC 1 cut(s) 293
MboI GATC 2 cut(s) 222, 267
MflI RGATCY 1 cut(s) 267
MhlI GDGCHC 1 cut(s) 64
MlyI GAGTC 1 cut(s) 140
MmeI TCCRAC 1 cut(s) 245
MnlI CCTC 5 cut(s) 85, 110, 167, 282, 366
MseI TTAA 2 cut(s) 317, 406
MspR9I CCNGG 2 cut(s) 196, 365
Mva1269I GAATGC 1 cut(s) 73
MvaI CCWGG 2 cut(s) 196, 365
MvnI CGCG 1 cut(s) 288
MwoI GCNNNNNNNGC 3 cut(s) 68, 92, 287
NdeII GATC 2 cut(s) 222, 267
NlaIV GGNNCC 1 cut(s) 269
NmuCI GTSAC 1 cut(s) 298
NsbI TGCGCA 1 cut(s) 106
PceI AGGCCT 1 cut(s) 194
PctI GAATGC 1 cut(s) 73
PfeI GAWTC 2 cut(s) 7, 140
PkrI GCNGC 3 cut(s) 85, 292, 307
PleI GAGTC 1 cut(s) 140
PmaCI CACGTG 1 cut(s) 298
PmlI CACGTG 1 cut(s) 298
PpsI GAGTC 1 cut(s) 140
Ppu21I YACGTR 1 cut(s) 298
Psp6I CCWGG 2 cut(s) 194, 363
PspCI CACGTG 1 cut(s) 298
PspGI CCWGG 2 cut(s) 194, 363
PspN4I GGNNCC 1 cut(s) 269
PspPI GGNCC 1 cut(s) 198
PstNI CAGNNNCTG 1 cut(s) 77
PsuI RGATCY 1 cut(s) 267
SaqAI TTAA 2 cut(s) 317, 406
SatI GCNGC 3 cut(s) 84, 291, 306
Sau3AI GATC 2 cut(s) 222, 267
Sau96I GGNCC 1 cut(s) 198
SchI GAGTC 1 cut(s) 140
ScrFI CCNGG 2 cut(s) 196, 365
SduI GDGCHC 1 cut(s) 64
SetI ASST 7 cut(s) 88, 121, 178, 245, 255, 300, 358
SfaNI GCATC 1 cut(s) 92
SinI GGWCC 1 cut(s) 198
SseBI AGGCCT 1 cut(s) 194
SsiI CCGC 5 cut(s) 291, 305, 323, 332, 370
SspMI CTAG 2 cut(s) 39, 396
StuI AGGCCT 1 cut(s) 194
StyD4I CCNGG 2 cut(s) 194, 363
TaiI ACGT 2 cut(s) 255, 300
TaqI TCGA 2 cut(s) 90, 162
TauI GCSGC 2 cut(s) 293, 308
TfiI GAWTC 2 cut(s) 7, 140
Tru1I TTAA 2 cut(s) 317, 406
Tru9I TTAA 2 cut(s) 317, 406
TscAI CASTG 1 cut(s) 69
TseFI GTSAC 1 cut(s) 298
TseI GCWGC 1 cut(s) 83
Tsp45I GTSAC 1 cut(s) 298
TspGWI ACGGA 1 cut(s) 348
TspRI CASTG 1 cut(s) 69
VneI GTGCAC 1 cut(s) 60
VpaK11BI GGWCC 1 cut(s) 198
XspI CTAG 2 cut(s) 39, 396
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.