Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 43 - 162 | 3.4e-18 | Reverse transcriptase-like |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 220 |
| AciI | CCGC | 5 cut(s) | 36, 220, 275, 496, 581 |
| AcsI | RAATTY | 3 cut(s) | 75, 460, 596 |
| AcuI | CTGAAG | 1 cut(s) | 273 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 110 |
| AflIII | ACRYGT | 1 cut(s) | 115 |
| AgsI | TTSAA | 4 cut(s) | 320, 330, 360, 425 |
| AjnI | CCWGG | 4 cut(s) | 94, 109, 243, 540 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 54, 86 |
| AluBI | AGCT | 3 cut(s) | 182, 257, 263 |
| AluI | AGCT | 3 cut(s) | 182, 257, 263 |
| Alw26I | GTCTC | 1 cut(s) | 146 |
| AoxI | GGCC | 1 cut(s) | 480 |
| ApeKI | GCWGC | 4 cut(s) | 137, 263, 272, 467 |
| ApoI | RAATTY | 3 cut(s) | 75, 460, 596 |
| AspLEI | GCGC | 3 cut(s) | 176, 294, 606 |
| AsuC2I | CCSGG | 2 cut(s) | 509, 593 |
| AsuHPI | GGTGA | 1 cut(s) | 73 |
| BaeGI | GKGCMC | 1 cut(s) | 509 |
| BauI | CACGAG | 1 cut(s) | 558 |
| BbvI | GCAGC | 4 cut(s) | 124, 250, 284, 454 |
| BccI | CCATC | 5 cut(s) | 32, 73, 203, 356, 557 |
| BciT130I | CCWGG | 4 cut(s) | 96, 111, 245, 542 |
| BcnI | CCSGG | 2 cut(s) | 509, 593 |
| BcoDI | GTCTC | 1 cut(s) | 146 |
| BfaI | CTAG | 4 cut(s) | 183, 258, 488, 588 |
| BfoI | RGCGCY | 1 cut(s) | 607 |
| BisI | GCNGC | 4 cut(s) | 138, 264, 273, 468 |
| BlsI | GCNGC | 4 cut(s) | 139, 265, 274, 469 |
| Bme1390I | CCNGG | 6 cut(s) | 96, 111, 245, 509, 542, 593 |
| BmiI | GGNNCC | 3 cut(s) | 100, 199, 238 |
| BmrFI | CCNGG | 6 cut(s) | 96, 111, 245, 509, 542, 593 |
| BmsI | GCATC | 2 cut(s) | 124, 303 |
| BpmI | CTGGAG | 1 cut(s) | 266 |
| BpuMI | CCSGG | 2 cut(s) | 509, 593 |
| Bsa29I | ATCGAT | 2 cut(s) | 132, 207 |
| BsaBI | GATNNNNATC | 1 cut(s) | 128 |
| BsaJI | CCNNGG | 3 cut(s) | 243, 417, 540 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 54, 84 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 110 |
| Bse1I | ACTGG | 1 cut(s) | 169 |
| Bse8I | GATNNNNATC | 1 cut(s) | 128 |
| BseBI | CCWGG | 4 cut(s) | 96, 111, 245, 542 |
| BseCI | ATCGAT | 2 cut(s) | 132, 207 |
| BseDI | CCNNGG | 3 cut(s) | 243, 417, 540 |
| BseGI | GGATG | 1 cut(s) | 294 |
| BseJI | GATNNNNATC | 1 cut(s) | 128 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 110 |
| BseNI | ACTGG | 1 cut(s) | 169 |
| BseRI | GAGGAG | 1 cut(s) | 229 |
| BseSI | GKGCMC | 1 cut(s) | 509 |
| BseXI | GCAGC | 4 cut(s) | 124, 250, 284, 454 |
| Bsh1236I | CGCG | 1 cut(s) | 220 |
| BshFI | GGCC | 1 cut(s) | 482 |
| BshVI | ATCGAT | 2 cut(s) | 132, 207 |
| BsiSI | CCGG | 2 cut(s) | 509, 593 |
| BslFI | GGGAC | 2 cut(s) | 200, 290 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 110 |
| BsmAI | GTCTC | 1 cut(s) | 146 |
| BsmFI | GGGAC | 2 cut(s) | 200, 290 |
| BsnI | GGCC | 1 cut(s) | 482 |
| Bsp1286I | GDGCHC | 1 cut(s) | 509 |
| Bsp143I | GATC | 2 cut(s) | 123, 523 |
| BspACI | CCGC | 5 cut(s) | 36, 220, 275, 496, 581 |
| BspANI | GGCC | 1 cut(s) | 482 |
| BspDI | ATCGAT | 2 cut(s) | 132, 207 |
| BspFNI | CGCG | 1 cut(s) | 220 |
| BspLI | GGNNCC | 3 cut(s) | 100, 199, 238 |
| BsrI | ACTGG | 1 cut(s) | 169 |
| BssECI | CCNNGG | 3 cut(s) | 243, 417, 540 |
| BssMI | GATC | 2 cut(s) | 123, 523 |
| BssSI | CACGAG | 1 cut(s) | 558 |
| BssT1I | CCWWGG | 1 cut(s) | 417 |
| Bst2BI | CACGAG | 1 cut(s) | 558 |
| Bst2UI | CCWGG | 4 cut(s) | 96, 111, 245, 542 |
| Bst4CI | ACNGT | 1 cut(s) | 191 |
| BstF5I | GGATG | 1 cut(s) | 294 |
| BstFNI | CGCG | 1 cut(s) | 220 |
| BstH2I | RGCGCY | 1 cut(s) | 607 |
| BstHHI | GCGC | 3 cut(s) | 176, 294, 606 |
| BstKTI | GATC | 2 cut(s) | 126, 526 |
| BstMAI | GTCTC | 1 cut(s) | 146 |
| BstMBI | GATC | 2 cut(s) | 123, 523 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 263, 269, 272, 464, 493 |
| BstNI | CCWGG | 4 cut(s) | 96, 111, 245, 542 |
| BstNSI | RCATGY | 1 cut(s) | 119 |
| BstSCI | CCNGG | 6 cut(s) | 94, 109, 243, 507, 540, 591 |
| BstSLI | GKGCMC | 1 cut(s) | 509 |
| BstUI | CGCG | 1 cut(s) | 220 |
| BstV1I | GCAGC | 4 cut(s) | 124, 250, 284, 454 |
| Bsu15I | ATCGAT | 2 cut(s) | 132, 207 |
| BsuRI | GGCC | 1 cut(s) | 482 |
| BsuTUI | ATCGAT | 2 cut(s) | 132, 207 |
| BtsCI | GGATG | 1 cut(s) | 294 |
| CfoI | GCGC | 3 cut(s) | 176, 294, 606 |
| ClaI | ATCGAT | 2 cut(s) | 132, 207 |
| CviAII | CATG | 4 cut(s) | 116, 194, 302, 573 |
| CviJI | RGCY | 9 cut(s) | 182, 198, 213, 237, 251, 257, 263, 482, 591 |
| CviKI_1 | RGCY | 9 cut(s) | 182, 198, 213, 237, 251, 257, 263, 482, 591 |
| DpnI | GATC | 2 cut(s) | 125, 525 |
| DpnII | GATC | 2 cut(s) | 123, 523 |
| EciI | GGCGGA | 1 cut(s) | 570 |
| Eco130I | CCWWGG | 1 cut(s) | 417 |
| Eco57I | CTGAAG | 1 cut(s) | 273 |
| EcoRI | GAATTC | 1 cut(s) | 460 |
| EcoRII | CCWGG | 4 cut(s) | 94, 109, 243, 540 |
| EcoT14I | CCWWGG | 1 cut(s) | 417 |
| ErhI | CCWWGG | 1 cut(s) | 417 |
| FaeI | CATG | 4 cut(s) | 119, 197, 305, 576 |
| FaiI | YATR | 4 cut(s) | 117, 195, 303, 574 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 418, 450 |
| FaqI | GGGAC | 2 cut(s) | 200, 290 |
| FatI | CATG | 4 cut(s) | 115, 193, 301, 572 |
| FauI | CCCGC | 1 cut(s) | 213 |
| Fnu4HI | GCNGC | 4 cut(s) | 138, 264, 273, 468 |
| FokI | GGATG | 1 cut(s) | 281 |
| Fsp4HI | GCNGC | 4 cut(s) | 138, 264, 273, 468 |
| FspBI | CTAG | 4 cut(s) | 183, 258, 488, 588 |
| GlaI | GCGC | 3 cut(s) | 175, 293, 605 |
| GluI | GCNGC | 4 cut(s) | 138, 264, 273, 468 |
| GsuI | CTGGAG | 1 cut(s) | 266 |
| HaeII | RGCGCY | 1 cut(s) | 607 |
| HaeIII | GGCC | 1 cut(s) | 482 |
| HapII | CCGG | 2 cut(s) | 509, 593 |
| HhaI | GCGC | 3 cut(s) | 176, 294, 606 |
| Hin1II | CATG | 4 cut(s) | 119, 197, 305, 576 |
| Hin6I | GCGC | 3 cut(s) | 174, 292, 604 |
| HinP1I | GCGC | 3 cut(s) | 174, 292, 604 |
| HincII | GTYRAC | 1 cut(s) | 285 |
| HindII | GTYRAC | 1 cut(s) | 285 |
| HinfI | GANTC | 4 cut(s) | 320, 326, 344, 445 |
| HpaII | CCGG | 2 cut(s) | 509, 593 |
| HphI | GGTGA | 1 cut(s) | 73 |
| Hpy166II | GTNNAC | 2 cut(s) | 285, 569 |
| Hpy188I | TCNGA | 2 cut(s) | 61, 325 |
| Hpy188III | TCNNGA | 2 cut(s) | 403, 560 |
| Hpy8I | GTNNAC | 2 cut(s) | 285, 569 |
| HpyAV | CCTTC | 2 cut(s) | 543, 594 |
| HpyCH4III | ACNGT | 1 cut(s) | 191 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 263, 269, 272, 464, 493 |
| Hsp92II | CATG | 4 cut(s) | 119, 197, 305, 576 |
| HspAI | GCGC | 3 cut(s) | 174, 292, 604 |
| Kzo9I | GATC | 2 cut(s) | 123, 523 |
| LmnI | GCTCC | 3 cut(s) | 203, 242, 388 |
| Lsp1109I | GCAGC | 4 cut(s) | 124, 250, 284, 454 |
| LweI | GCATC | 2 cut(s) | 124, 303 |
| MaeI | CTAG | 4 cut(s) | 183, 258, 488, 588 |
| MalI | GATC | 2 cut(s) | 125, 525 |
| MboI | GATC | 2 cut(s) | 123, 523 |
| MboII | GAAGA | 3 cut(s) | 37, 511, 528 |
| MhlI | GDGCHC | 1 cut(s) | 509 |
| MluCI | AATT | 5 cut(s) | 75, 355, 378, 460, 596 |
| MnlI | CCTC | 9 cut(s) | 43, 98, 241, 250, 309, 493, 505, 540, 588 |
| MseI | TTAA | 2 cut(s) | 120, 147 |
| MspA1I | CMGCKG | 1 cut(s) | 275 |
| MspI | CCGG | 2 cut(s) | 509, 593 |
| MspR9I | CCNGG | 6 cut(s) | 96, 111, 245, 509, 542, 593 |
| MvaI | CCWGG | 4 cut(s) | 96, 111, 245, 542 |
| MvnI | CGCG | 1 cut(s) | 220 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 263, 269, 272, 464, 493 |
| NciI | CCSGG | 2 cut(s) | 509, 593 |
| NdeII | GATC | 2 cut(s) | 123, 523 |
| NlaIII | CATG | 4 cut(s) | 119, 197, 305, 576 |
| NlaIV | GGNNCC | 3 cut(s) | 100, 199, 238 |
| NspI | RCATGY | 1 cut(s) | 119 |
| PciI | ACATGT | 1 cut(s) | 115 |
| PfeI | GAWTC | 4 cut(s) | 320, 326, 344, 445 |
| PfoI | TCCNGGA | 1 cut(s) | 94 |
| PkrI | GCNGC | 4 cut(s) | 139, 265, 274, 469 |
| PscI | ACATGT | 1 cut(s) | 115 |
| Psp6I | CCWGG | 4 cut(s) | 94, 109, 243, 540 |
| PspGI | CCWGG | 4 cut(s) | 94, 109, 243, 540 |
| PspN4I | GGNNCC | 3 cut(s) | 100, 199, 238 |
| SaqAI | TTAA | 2 cut(s) | 120, 147 |
| SatI | GCNGC | 4 cut(s) | 138, 264, 273, 468 |
| Sau3AI | GATC | 2 cut(s) | 123, 523 |
| ScrFI | CCNGG | 6 cut(s) | 96, 111, 245, 509, 542, 593 |
| SduI | GDGCHC | 1 cut(s) | 509 |
| SetI | ASST | 9 cut(s) | 35, 112, 162, 184, 259, 265, 419, 431, 516 |
| SfaNI | GCATC | 2 cut(s) | 124, 303 |
| Sse9I | AATT | 5 cut(s) | 75, 355, 378, 460, 596 |
| SsiI | CCGC | 5 cut(s) | 36, 220, 275, 496, 581 |
| SspMI | CTAG | 4 cut(s) | 183, 258, 488, 588 |
| StyD4I | CCNGG | 6 cut(s) | 94, 109, 243, 507, 540, 591 |
| StyI | CCWWGG | 1 cut(s) | 417 |
| TaaI | ACNGT | 1 cut(s) | 191 |
| TaqI | TCGA | 2 cut(s) | 132, 207 |
| TasI | AATT | 5 cut(s) | 75, 355, 378, 460, 596 |
| TfiI | GAWTC | 4 cut(s) | 320, 326, 344, 445 |
| Tru1I | TTAA | 2 cut(s) | 120, 147 |
| Tru9I | TTAA | 2 cut(s) | 120, 147 |
| TseI | GCWGC | 4 cut(s) | 137, 263, 272, 467 |
| TspDTI | ATGAA | 1 cut(s) | 31 |
| XapI | RAATTY | 3 cut(s) | 75, 460, 596 |
| XceI | RCATGY | 1 cut(s) | 119 |
| XspI | CTAG | 4 cut(s) | 183, 258, 488, 588 |