Rh6CG144300

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000093
Physical Location & Seq
Forward (+)
18803398 .. 18803745
348 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG144300.1

Sequence Viewer

Length: 348 bp
ATGGAGATTGAAAAGATGCTTACTGTTGTCAGCAGTCTGTGTTGGAATATTTTGAAGGCGAGGTGTGCTTGTCTATACCCGCAGCGACCCGTCTCCTCGAGTCACACCATTACCACTTCTCTTAGTCTGGTATCAGAATTTCTTGAGGCTTCGAAGGGGCCACTGTCCTCCCCGACACAAGAATCCAGTAGAGCTGTTAATCACTATAATTGGACTGCTCCTCCTCTAGGTTTTATGAAGGTTAACTGTGATGCAGCTTGGGTAGCTCCGAATTCGGCTGGACTGGAAGTCATCACTAGAGACCATTTGGGATCCTCCCTTGGTGGCTCGGCAACCCCAGCTACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

115

Amino Acids

12.28

Weight (kDa)

6.81

Isoelectric Point (pI)

65.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000093)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G09490
fragaria_vesca FvH4_1g23791 FvH4_2g01641 FvH4_2g04612 FvH4_2g06831 FvH4_2g07841 FvH4_2g13581 FvH4_2g27220 FvH4_2g30621 FvH4_2g34753 FvH4_3g10392 FvH4_3g24291 FvH4_3g25030 FvH4_3g29361 FvH4_3g31372 FvH4_3g32402 FvH4_3g43651 FvH4_4g03830 FvH4_4g05481 FvH4_4g20431 FvH4_4g21421 FvH4_4g25931 FvH4_5g08801 FvH4_5g21021 FvH4_5g26254 FvH4_5g30931 FvH4_5g31281 FvH4_5g33581 FvH4_5g35622 FvH4_6g02100 FvH4_6g07963 FvH4_6g11620 FvH4_6g16031 FvH4_6g19041 FvH4_6g24211 FvH4_6g24271 FvH4_6g30670 FvH4_6g49540 FvH4_7g25914
malus_domestica MD03G1245200.v1.1 MD04G1168000.v1.1 MD09G1242600.v1.1 MD15G1334000.v1.1 MD17G1165700.v1.1
prunus_persica Prupe.1G073500_v2.0.a1 Prupe.1G283700_v2.0.a1 Prupe.1G524100_v2.0.a1 Prupe.2G022700_v2.0.a1 Prupe.2G022800_v2.0.a1 Prupe.2G022800_v2.0.a1 Prupe.2G044300_v2.0.a1 Prupe.2G048800_v2.0.a1 Prupe.2G092000_v2.0.a1 Prupe.2G216500_v2.0.a1 Prupe.2G216600_v2.0.a1 Prupe.2G216600_v2.0.a1 Prupe.3G103400_v2.0.a1 Prupe.3G143300_v2.0.a1 Prupe.3G190000_v2.0.a1 Prupe.3G219800_v2.0.a1 Prupe.4G177800_v2.0.a1 Prupe.4G261300_v2.0.a1 Prupe.5G044600_v2.0.a1 Prupe.5G067400_v2.0.a1 Prupe.7G083900_v2.0.a1 Prupe.7G120900_v2.0.a1 Prupe.8G032200_v2.0.a1 Prupe.8G036100_v2.0.a1 Prupe.8G042700_v2.0.a1
pyrus_communis pycom01g21710 pycom02g19770 pycom03g05120 pycom05g01370 pycom05g08780 pycom05g10120 pycom07g01370 pycom07g05930 pycom08g15760 pycom08g18090 pycom08g21060 pycom09g03880 pycom10g03870 pycom13g22240 pycom16g05120 pycom16g17170 pycom17g12180 pycom17g16290 pycom17g21230 pycom17g24990 pycom215g00100
rosa_chinensis RchiOBHm_Chr1g0323031 RchiOBHm_Chr1g0324391 RchiOBHm_Chr1g0326401 RchiOBHm_Chr1g0327811 RchiOBHm_Chr1g0332521 RchiOBHm_Chr1g0336501 RchiOBHm_Chr1g0346021 RchiOBHm_Chr1g0347191 RchiOBHm_Chr1g0367181 RchiOBHm_Chr2g0089441 RchiOBHm_Chr2g0115441 RchiOBHm_Chr3g0490691 RchiOBHm_Chr4g0395251 RchiOBHm_Chr4g0398081 RchiOBHm_Chr4g0409451 RchiOBHm_Chr4g0413041 RchiOBHm_Chr4g0415471 RchiOBHm_Chr4g0420961 RchiOBHm_Chr5g0040301 RchiOBHm_Chr5g0070651 RchiOBHm_Chr6g0263011 RchiOBHm_Chr6g0270721 RchiOBHm_Chr6g0277111 RchiOBHm_Chr7g0179771 RchiOBHm_Chr7g0223051 RchiOBHm_Chr7g0225031 RchiOBHm_Chr7g0225091
rosa_laevigata RLG00000001668 RLG00000001672 RLG00000001676 RLG00000007762 RLG00000008994 RLG00000011117 RLG00000013729 RLG00000013839 RLG00000014759 RLG00000016638 RLG00000018535 RLG00000018614 RLG00000018646 RLG00000020679 RLG00000023337 RLG00000029348 RLG00000035891 RLG00000035912
rosa_multiflora Rmu_co8152500.1_g000001 Rmu_co8203314.1_g000001 Rmu_co8383183.1_g000001 Rmu_sc0000293.1_g000033 Rmu_sc0000367.1_g000226 Rmu_sc0000512.1_g000023 Rmu_sc0000594.1_g000059 Rmu_sc0000654.1_g000022 Rmu_sc0000654.1_g000047 Rmu_sc0000706.1_g000037 Rmu_sc0001348.1_g000008 Rmu_sc0001385.1_g000024 Rmu_sc0001405.1_g000002 Rmu_sc0001521.1_g000048 Rmu_sc0001932.1_g000008 Rmu_sc0001932.1_g000009 Rmu_sc0002535.1_g000011 Rmu_sc0002908.1_g000019 Rmu_sc0003709.1_g000004 Rmu_sc0003882.1_g000054 Rmu_sc0004035.1_g000007 Rmu_sc0004041.1_g000007 Rmu_sc0004288.1_g000011 Rmu_sc0004569.1_g000004 Rmu_sc0004677.1_g000016 Rmu_sc0004834.1_g000010 Rmu_sc0005193.1_g000008 Rmu_sc0005354.1_g000009 Rmu_sc0006514.1_g000021 Rmu_sc0006691.1_g000001 Rmu_sc0006888.1_g000021 Rmu_sc0006889.1_g000013 Rmu_sc0008096.1_g000017 Rmu_sc0008378.1_g000003 Rmu_sc0009127.1_g000005 Rmu_sc0009191.1_g000016 Rmu_sc0009687.1_g000018 Rmu_sc0009709.1_g000005 Rmu_sc0009880.1_g000015 Rmu_sc0011710.1_g000001 Rmu_sc0012615.1_g000004 Rmu_sc0016091.1_g000002 Rmu_sc0022339.1_g000006 Rmu_sc0026537.1_g000002 Rmu_sc0027689.1_g000002 Rmu_sc0036222.1_g000001 Rmu_sc0040890.1_g000001 Rmu_ssc0000148.1_g000006 Rmu_ssc0000151.1_g000017 Rmu_ssc0000404.1_g000018 Rmu_ssc0000449.1_g000009
rosa_roxburghii Rroxscaffold_1G00017760 Rroxscaffold_1G00059150 Rroxscaffold_2G00142560 Rroxscaffold_3G00220440 Rroxscaffold_3G00231700 Rroxscaffold_3G00232400 Rroxscaffold_3G00274510 Rroxscaffold_4G00288790 Rroxscaffold_4G00305680 Rroxscaffold_4G00314880 Rroxscaffold_4G00314900 Rroxscaffold_5G00334590 Rroxscaffold_6G00394110 Rroxscaffold_6G00415860 Rroxscaffold_7G00168240 Rroxscaffold_7G00204400 Rroxscaffold_7G00207840
rosa_rugosa Rorug01G0034900 Rorug02G0079500 Rorug02G0229000 Rorug02G0229100 Rorug02G0291400 Rorug02G0298800 Rorug03G0046400 Rorug03G0064700 Rorug03G0077300 Rorug03G0199000 Rorug03G0200400 Rorug04G0205200 Rorug05G0025400 Rorug05G0127400 Rorug05G0192100 Rorug05G0453400 Rorug05G0538300 Rorug06G0035200 Rorug06G0241000 Rorug06G0268300 Rorug07G0120300 Rorug07G0145000 Rorug07G0209100 Rorug07G0240500 Rorug07G0271700
rosa_samantha Rh1AG179100 Rh1BG106900 Rh1BG163400 Rh1BG163500 Rh1BG323500 Rh2CG447900 Rh2DG503700 Rh3AG293600 Rh3CG229100 Rh3DG221500 Rh4AG106000 Rh4BG267700 Rh4CG062500 Rh4CG090100 Rh4CG114800 Rh5AG038400 Rh5BG395400 Rh5CG441700 Rh5CG572000 Rh6AG222400 Rh6AG264500 Rh6BG137400 Rh6BG225700 Rh6CG144300 Rh6DG087600 Rh6DG096000 Rh6DG362400 Rh6DG390200 Rh7AG207500 Rh7AG324700 Rh7AG388800 Rh7AG437100 Rh7BG019000 Rh7BG374600 Rh7CG028700 Rh7CG341500 Rh7CG408000 Rh7CG408300 Rh7DG354600
rosa_wichuraiana Rw0G009630 Rw0G012170 Rw4G022700 Rw5G028420 Rw5G029490 Rw6G007220 Rw6G007410 Rw6G017880 Rw7G012440 Rw7G021830 Rw7G027490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 80
AclWI GGATC 2 cut(s) 306, 319
AcsI RAATTY 2 cut(s) 137, 271
AfiI CCNNNNNNNGG 1 cut(s) 227
AgsI TTSAA 2 cut(s) 11, 55
AhdI GACNNNNNGTC 1 cut(s) 287
AluBI AGCT 4 cut(s) 194, 257, 266, 341
AluI AGCT 4 cut(s) 194, 257, 266, 341
Alw26I GTCTC 2 cut(s) 97, 294
AlwI GGATC 2 cut(s) 306, 319
Ama87I CYCGRG 1 cut(s) 97
AoxI GGCC 1 cut(s) 158
ApeKI GCWGC 2 cut(s) 82, 254
ApoI RAATTY 2 cut(s) 137, 271
AspS9I GGNCC 1 cut(s) 158
AsuII TTCGAA 1 cut(s) 152
AvaI CYCGRG 1 cut(s) 97
BamHI GGATCC 1 cut(s) 311
BbvI GCAGC 2 cut(s) 94, 266
BcoDI GTCTC 2 cut(s) 97, 294
BfaI CTAG 2 cut(s) 227, 297
BisI GCNGC 2 cut(s) 83, 255
BlsI GCNGC 2 cut(s) 84, 256
BmeRI GACNNNNNGTC 1 cut(s) 287
BmeT110I CYCGRG 1 cut(s) 97
BmgT120I GGNCC 1 cut(s) 158
BmiI GGNNCC 2 cut(s) 159, 313
BmsI GCATC 2 cut(s) 6, 241
Bpu14I TTCGAA 1 cut(s) 152
BpuEI CTTGAG 1 cut(s) 164
BsaI GGTCTC 1 cut(s) 294
BsaJI CCNNGG 1 cut(s) 319
BsaXI ACNNNNNCTCC 2 cut(s) 205, 235
Bsc4I CCNNNNNNNGG 1 cut(s) 227
Bse1I ACTGG 2 cut(s) 186, 288
BseDI CCNNGG 1 cut(s) 319
BseLI CCNNNNNNNGG 1 cut(s) 227
BseNI ACTGG 2 cut(s) 186, 288
BseRI GAGGAG 3 cut(s) 85, 210, 213
BseXI GCAGC 2 cut(s) 94, 266
BseYI CCCAGC 1 cut(s) 337
BshFI GGCC 1 cut(s) 160
BsiHKCI CYCGRG 1 cut(s) 97
BslI CCNNNNNNNGG 1 cut(s) 227
BsmAI GTCTC 2 cut(s) 97, 294
BsmBI CGTCTC 1 cut(s) 97
BsnI GGCC 1 cut(s) 160
Bso31I GGTCTC 1 cut(s) 294
BsoBI CYCGRG 1 cut(s) 97
Bsp119I TTCGAA 1 cut(s) 152
Bsp143I GATC 1 cut(s) 311
BspACI CCGC 1 cut(s) 80
BspANI GGCC 1 cut(s) 160
BspLI GGNNCC 2 cut(s) 159, 313
BspPI GGATC 2 cut(s) 306, 319
BspT104I TTCGAA 1 cut(s) 152
BspTNI GGTCTC 1 cut(s) 294
BsrI ACTGG 2 cut(s) 186, 288
BssECI CCNNGG 1 cut(s) 319
BssMI GATC 1 cut(s) 311
BssT1I CCWWGG 1 cut(s) 319
Bst4CI ACNGT 3 cut(s) 25, 165, 248
BstBI TTCGAA 1 cut(s) 152
BstDEI CTNAG 1 cut(s) 122
BstENI CCTNNNNNAGG 1 cut(s) 225
BstKTI GATC 1 cut(s) 314
BstMAI GTCTC 2 cut(s) 97, 294
BstMBI GATC 1 cut(s) 311
BstMWI GCNNNNNNNGC 3 cut(s) 65, 263, 338
BstV1I GCAGC 2 cut(s) 94, 266
BstX2I RGATCY 1 cut(s) 311
BstYI RGATCY 1 cut(s) 311
BsuRI GGCC 1 cut(s) 160
BtsIMutI CAGTG 1 cut(s) 161
Cfr13I GGNCC 1 cut(s) 158
CviAII CATG 1 cut(s) 345
CviJI RGCY 8 cut(s) 149, 160, 194, 257, 266, 278, 327, 341
CviKI_1 RGCY 8 cut(s) 149, 160, 194, 257, 266, 278, 327, 341
DdeI CTNAG 1 cut(s) 122
DpnI GATC 1 cut(s) 313
DpnII GATC 1 cut(s) 311
DriI GACNNNNNGTC 1 cut(s) 287
Eam1105I GACNNNNNGTC 1 cut(s) 287
Eco130I CCWWGG 1 cut(s) 319
Eco31I GGTCTC 1 cut(s) 294
Eco88I CYCGRG 1 cut(s) 97
EcoNI CCTNNNNNAGG 1 cut(s) 225
EcoRI GAATTC 1 cut(s) 271
EcoT14I CCWWGG 1 cut(s) 319
ErhI CCWWGG 1 cut(s) 319
Esp3I CGTCTC 1 cut(s) 97
FaeI CATG 1 cut(s) 348
FaiI YATR 4 cut(s) 76, 207, 236, 346
FatI CATG 1 cut(s) 344
FauI CCCGC 1 cut(s) 87
Fnu4HI GCNGC 2 cut(s) 83, 255
Fsp4HI GCNGC 2 cut(s) 83, 255
FspBI CTAG 2 cut(s) 227, 297
GluI GCNGC 2 cut(s) 83, 255
GsaI CCCAGC 1 cut(s) 341
HaeIII GGCC 1 cut(s) 160
Hin1II CATG 1 cut(s) 348
HincII GTYRAC 1 cut(s) 244
HindII GTYRAC 1 cut(s) 244
HinfI GANTC 2 cut(s) 100, 182
HpaI GTTAAC 1 cut(s) 244
Hpy166II GTNNAC 1 cut(s) 244
Hpy188I TCNGA 2 cut(s) 136, 270
Hpy188III TCNNGA 1 cut(s) 143
Hpy8I GTNNAC 1 cut(s) 244
HpyAV CCTTC 3 cut(s) 49, 148, 232
HpyCH4III ACNGT 3 cut(s) 25, 165, 248
HpyCH4V TGCA 1 cut(s) 254
HpyF10VI GCNNNNNNNGC 3 cut(s) 65, 263, 338
HpyF3I CTNAG 1 cut(s) 122
Hsp92II CATG 1 cut(s) 348
KspAI GTTAAC 1 cut(s) 244
Kzo9I GATC 1 cut(s) 311
LmnI GCTCC 2 cut(s) 223, 271
LpnPI CCDG 4 cut(s) 113, 199, 264, 269
Lsp1109I GCAGC 2 cut(s) 94, 266
LweI GCATC 2 cut(s) 6, 241
MaeI CTAG 2 cut(s) 227, 297
MaeIII GTNAC 1 cut(s) 101
MalI GATC 1 cut(s) 313
MboI GATC 1 cut(s) 311
MflI RGATCY 1 cut(s) 311
MluCI AATT 3 cut(s) 137, 208, 271
MlyI GAGTC 1 cut(s) 109
MmeI TCCRAC 1 cut(s) 23
MnlI CCTC 7 cut(s) 54, 106, 139, 178, 231, 234, 325
MseI TTAA 2 cut(s) 198, 243
MwoI GCNNNNNNNGC 3 cut(s) 65, 263, 338
NdeII GATC 1 cut(s) 311
NlaIII CATG 1 cut(s) 348
NlaIV GGNNCC 2 cut(s) 159, 313
NmeAIII GCCGAG 1 cut(s) 308
NmuCI GTSAC 1 cut(s) 101
NspV TTCGAA 1 cut(s) 152
PaeR7I CTCGAG 1 cut(s) 97
PfeI GAWTC 1 cut(s) 182
PkrI GCNGC 2 cut(s) 84, 256
PleI GAGTC 1 cut(s) 108
PpsI GAGTC 1 cut(s) 108
PspFI CCCAGC 1 cut(s) 337
PspN4I GGNNCC 2 cut(s) 159, 313
PspPI GGNCC 1 cut(s) 158
PspXI VCTCGAGB 1 cut(s) 97
PsuI RGATCY 1 cut(s) 311
SaqAI TTAA 2 cut(s) 198, 243
SatI GCNGC 2 cut(s) 83, 255
Sau3AI GATC 1 cut(s) 311
Sau96I GGNCC 1 cut(s) 158
SchI GAGTC 1 cut(s) 109
SetI ASST 7 cut(s) 65, 196, 232, 243, 259, 268, 343
SfaNI GCATC 2 cut(s) 6, 241
Sfr274I CTCGAG 1 cut(s) 97
SfuI TTCGAA 1 cut(s) 152
SlaI CTCGAG 1 cut(s) 97
SmlI CTYRAG 2 cut(s) 97, 143
SmoI CTYRAG 2 cut(s) 97, 143
Sse9I AATT 3 cut(s) 137, 208, 271
SsiI CCGC 1 cut(s) 80
SspI AATATT 1 cut(s) 49
SspMI CTAG 2 cut(s) 227, 297
StyI CCWWGG 1 cut(s) 319
TaaI ACNGT 3 cut(s) 25, 165, 248
TaqI TCGA 2 cut(s) 98, 152
TasI AATT 3 cut(s) 137, 208, 271
TfiI GAWTC 1 cut(s) 182
Tru1I TTAA 2 cut(s) 198, 243
Tru9I TTAA 2 cut(s) 198, 243
TscAI CASTG 1 cut(s) 168
TseFI GTSAC 1 cut(s) 101
TseI GCWGC 2 cut(s) 82, 254
Tsp45I GTSAC 1 cut(s) 101
TspDTI ATGAA 1 cut(s) 251
TspRI CASTG 1 cut(s) 168
XagI CCTNNNNNAGG 1 cut(s) 225
XapI RAATTY 2 cut(s) 137, 271
XhoI CTCGAG 1 cut(s) 97
XspI CTAG 2 cut(s) 227, 297
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.