Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 28 - 150 | 4.2e-14 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 141 |
| AccB1I | GGYRCC | 1 cut(s) | 349 |
| AciI | CCGC | 2 cut(s) | 122, 266 |
| AcoI | YGGCCR | 1 cut(s) | 62 |
| AcsI | RAATTY | 1 cut(s) | 319 |
| AfaI | GTAC | 1 cut(s) | 163 |
| AgsI | TTSAA | 2 cut(s) | 19, 299 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 152 |
| AjnI | CCWGG | 1 cut(s) | 429 |
| AluBI | AGCT | 4 cut(s) | 206, 244, 402, 479 |
| AluI | AGCT | 4 cut(s) | 206, 244, 402, 479 |
| AoxI | GGCC | 3 cut(s) | 62, 210, 447 |
| ApoI | RAATTY | 1 cut(s) | 319 |
| AseI | ATTAAT | 1 cut(s) | 81 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 366 |
| AspS9I | GGNCC | 3 cut(s) | 99, 211, 411 |
| AsuHPI | GGTGA | 1 cut(s) | 537 |
| AsuII | TTCGAA | 1 cut(s) | 282 |
| AvaII | GGWCC | 2 cut(s) | 99, 411 |
| BanI | GGYRCC | 1 cut(s) | 349 |
| BccI | CCATC | 1 cut(s) | 337 |
| BciT130I | CCWGG | 1 cut(s) | 431 |
| Bme1390I | CCNGG | 1 cut(s) | 431 |
| Bme18I | GGWCC | 2 cut(s) | 99, 411 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 152 |
| BmgT120I | GGNCC | 3 cut(s) | 99, 211, 411 |
| BmiI | GGNNCC | 2 cut(s) | 271, 351 |
| BmrFI | CCNGG | 1 cut(s) | 431 |
| BmrI | ACTGGG | 1 cut(s) | 493 |
| BmsI | GCATC | 3 cut(s) | 79, 101, 520 |
| BmuI | ACTGGG | 1 cut(s) | 493 |
| BpmI | CTGGAG | 1 cut(s) | 424 |
| Bpu14I | TTCGAA | 1 cut(s) | 282 |
| BsaJI | CCNNGG | 1 cut(s) | 59 |
| BsaWI | WCCGGW | 1 cut(s) | 221 |
| Bse1I | ACTGG | 2 cut(s) | 344, 488 |
| BseBI | CCWGG | 1 cut(s) | 431 |
| BseDI | CCNNGG | 1 cut(s) | 59 |
| BseGI | GGATG | 3 cut(s) | 115, 474, 535 |
| BseNI | ACTGG | 2 cut(s) | 344, 488 |
| Bsh1285I | CGRYCG | 1 cut(s) | 126 |
| BshFI | GGCC | 3 cut(s) | 64, 212, 449 |
| BshNI | GGYRCC | 1 cut(s) | 349 |
| BsiEI | CGRYCG | 1 cut(s) | 126 |
| BsiSI | CCGG | 1 cut(s) | 222 |
| BslFI | GGGAC | 1 cut(s) | 159 |
| BsmFI | GGGAC | 1 cut(s) | 159 |
| BsnI | GGCC | 3 cut(s) | 64, 212, 449 |
| Bsp119I | TTCGAA | 1 cut(s) | 282 |
| BspACI | CCGC | 2 cut(s) | 122, 266 |
| BspANI | GGCC | 3 cut(s) | 64, 212, 449 |
| BspLI | GGNNCC | 2 cut(s) | 271, 351 |
| BspT104I | TTCGAA | 1 cut(s) | 282 |
| BspT107I | GGYRCC | 1 cut(s) | 349 |
| BsrI | ACTGG | 2 cut(s) | 344, 488 |
| BssECI | CCNNGG | 1 cut(s) | 59 |
| Bst2UI | CCWGG | 1 cut(s) | 431 |
| Bst4CI | ACNGT | 2 cut(s) | 346, 382 |
| Bst6I | CTCTTC | 1 cut(s) | 300 |
| BstBI | TTCGAA | 1 cut(s) | 282 |
| BstC8I | GCNNGC | 1 cut(s) | 460 |
| BstDEI | CTNAG | 1 cut(s) | 549 |
| BstF5I | GGATG | 3 cut(s) | 115, 474, 535 |
| BstMCI | CGRYCG | 1 cut(s) | 126 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 128, 455 |
| BstNI | CCWGG | 1 cut(s) | 431 |
| BstSCI | CCNGG | 1 cut(s) | 429 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 483 |
| BsuRI | GGCC | 3 cut(s) | 64, 212, 449 |
| BtsCI | GGATG | 3 cut(s) | 115, 474, 535 |
| BtsIMutI | CAGTG | 1 cut(s) | 351 |
| Cac8I | GCNNGC | 1 cut(s) | 460 |
| Cfr13I | GGNCC | 3 cut(s) | 99, 211, 411 |
| CsiI | ACCWGGT | 1 cut(s) | 429 |
| Csp6I | GTAC | 1 cut(s) | 162 |
| CviAII | CATG | 1 cut(s) | 5 |
| CviJI | RGCY | 9 cut(s) | 64, 182, 206, 212, 244, 402, 425, 449, 479 |
| CviKI_1 | RGCY | 9 cut(s) | 64, 182, 206, 212, 244, 402, 425, 449, 479 |
| CviQI | GTAC | 1 cut(s) | 162 |
| DdeI | CTNAG | 1 cut(s) | 549 |
| DriI | GACNNNNNGTC | 1 cut(s) | 152 |
| EaeI | YGGCCR | 1 cut(s) | 62 |
| Eam1104I | CTCTTC | 1 cut(s) | 300 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 152 |
| EarI | CTCTTC | 1 cut(s) | 300 |
| Eco47I | GGWCC | 2 cut(s) | 99, 411 |
| EcoRI | GAATTC | 1 cut(s) | 319 |
| EcoRII | CCWGG | 1 cut(s) | 429 |
| EcoT22I | ATGCAT | 2 cut(s) | 6, 94 |
| FaeI | CATG | 1 cut(s) | 8 |
| FaiI | YATR | 6 cut(s) | 6, 141, 196, 198, 399, 515 |
| FaqI | GGGAC | 1 cut(s) | 159 |
| FatI | CATG | 1 cut(s) | 4 |
| FauI | CCCGC | 1 cut(s) | 259 |
| FokI | GGATG | 3 cut(s) | 122, 481, 542 |
| GsuI | CTGGAG | 1 cut(s) | 424 |
| HaeIII | GGCC | 3 cut(s) | 64, 212, 449 |
| HapII | CCGG | 1 cut(s) | 222 |
| Hin1II | CATG | 1 cut(s) | 8 |
| HindIII | AAGCTT | 2 cut(s) | 204, 242 |
| HinfI | GANTC | 3 cut(s) | 284, 290, 542 |
| HpaII | CCGG | 1 cut(s) | 222 |
| HphI | GGTGA | 1 cut(s) | 537 |
| Hpy188I | TCNGA | 6 cut(s) | 29, 158, 289, 337, 357, 541 |
| Hpy188III | TCNNGA | 2 cut(s) | 76, 371 |
| HpyAV | CCTTC | 7 cut(s) | 195, 283, 402, 415, 459, 510, 514 |
| HpyCH4III | ACNGT | 2 cut(s) | 346, 382 |
| HpyCH4V | TGCA | 4 cut(s) | 4, 92, 200, 437 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 128, 455 |
| HpyF3I | CTNAG | 1 cut(s) | 549 |
| Hsp92II | CATG | 1 cut(s) | 8 |
| LmnI | GCTCC | 1 cut(s) | 224 |
| LweI | GCATC | 3 cut(s) | 79, 101, 520 |
| MabI | ACCWGGT | 1 cut(s) | 429 |
| MaeIII | GTNAC | 2 cut(s) | 51, 516 |
| MboII | GAAGA | 3 cut(s) | 31, 239, 287 |
| MluCI | AATT | 3 cut(s) | 82, 136, 319 |
| MlyI | GAGTC | 1 cut(s) | 536 |
| MmeI | TCCRAC | 1 cut(s) | 136 |
| MnlI | CCTC | 6 cut(s) | 45, 69, 112, 152, 261, 363 |
| Mph1103I | ATGCAT | 2 cut(s) | 6, 94 |
| MroXI | GAANNNNTTC | 1 cut(s) | 366 |
| MseI | TTAA | 2 cut(s) | 81, 315 |
| MspA1I | CMGCKG | 1 cut(s) | 479 |
| MspI | CCGG | 1 cut(s) | 222 |
| MspR9I | CCNGG | 1 cut(s) | 431 |
| MvaI | CCWGG | 1 cut(s) | 431 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 128, 455 |
| NlaIII | CATG | 1 cut(s) | 8 |
| NlaIV | GGNNCC | 2 cut(s) | 271, 351 |
| NmeAIII | GCCGAG | 1 cut(s) | 40 |
| NmuCI | GTSAC | 1 cut(s) | 51 |
| NsiI | ATGCAT | 2 cut(s) | 6, 94 |
| NspV | TTCGAA | 1 cut(s) | 282 |
| PdmI | GAANNNNTTC | 1 cut(s) | 366 |
| PfeI | GAWTC | 2 cut(s) | 284, 290 |
| PleI | GAGTC | 1 cut(s) | 536 |
| PpsI | GAGTC | 1 cut(s) | 536 |
| PshBI | ATTAAT | 1 cut(s) | 81 |
| PsiI | TTATAA | 1 cut(s) | 141 |
| Psp6I | CCWGG | 1 cut(s) | 429 |
| PspGI | CCWGG | 1 cut(s) | 429 |
| PspN4I | GGNNCC | 2 cut(s) | 271, 351 |
| PspPI | GGNCC | 3 cut(s) | 99, 211, 411 |
| PvuII | CAGCTG | 1 cut(s) | 479 |
| RsaI | GTAC | 1 cut(s) | 163 |
| RsaNI | GTAC | 1 cut(s) | 162 |
| SaqAI | TTAA | 2 cut(s) | 81, 315 |
| Sau96I | GGNCC | 3 cut(s) | 99, 211, 411 |
| SchI | GAGTC | 1 cut(s) | 536 |
| ScrFI | CCNGG | 1 cut(s) | 431 |
| SexAI | ACCWGGT | 1 cut(s) | 429 |
| SfaNI | GCATC | 3 cut(s) | 79, 101, 520 |
| SfuI | TTCGAA | 1 cut(s) | 282 |
| SinI | GGWCC | 2 cut(s) | 99, 411 |
| Sse9I | AATT | 3 cut(s) | 82, 136, 319 |
| SsiI | CCGC | 2 cut(s) | 122, 266 |
| StyD4I | CCNGG | 1 cut(s) | 429 |
| TaaI | ACNGT | 2 cut(s) | 346, 382 |
| TaqI | TCGA | 3 cut(s) | 276, 282, 370 |
| TasI | AATT | 3 cut(s) | 82, 136, 319 |
| TfiI | GAWTC | 2 cut(s) | 284, 290 |
| Tru1I | TTAA | 2 cut(s) | 81, 315 |
| Tru9I | TTAA | 2 cut(s) | 81, 315 |
| TscAI | CASTG | 1 cut(s) | 351 |
| TseFI | GTSAC | 1 cut(s) | 51 |
| Tsp45I | GTSAC | 1 cut(s) | 51 |
| TspDTI | ATGAA | 1 cut(s) | 296 |
| TspRI | CASTG | 1 cut(s) | 351 |
| VpaK11BI | GGWCC | 2 cut(s) | 99, 411 |
| VspI | ATTAAT | 1 cut(s) | 81 |
| XapI | RAATTY | 1 cut(s) | 319 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 336 |
| XmnI | GAANNNNTTC | 1 cut(s) | 366 |
| Zsp2I | ATGCAT | 2 cut(s) | 6, 94 |