ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 64 - 133 | 2.6e-08 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 406 |
| AciI | CCGC | 1 cut(s) | 305 |
| AclWI | GGATC | 3 cut(s) | 35, 154, 167 |
| AcuI | CTGAAG | 1 cut(s) | 336 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 130, 173 |
| AgsI | TTSAA | 4 cut(s) | 57, 111, 184, 383 |
| AjuI | GAANNNNNNNTTGG | 1 cut(s) | 34 |
| AluBI | AGCT | 5 cut(s) | 30, 65, 180, 320, 386 |
| AluI | AGCT | 5 cut(s) | 30, 65, 180, 320, 386 |
| Alw26I | GTCTC | 1 cut(s) | 209 |
| AlwI | GGATC | 3 cut(s) | 35, 154, 167 |
| ApeKI | GCWGC | 1 cut(s) | 236 |
| AseI | ATTAAT | 1 cut(s) | 189 |
| BamHI | GGATCC | 1 cut(s) | 159 |
| BbvI | GCAGC | 1 cut(s) | 248 |
| BcoDI | GTCTC | 1 cut(s) | 209 |
| BfaI | CTAG | 1 cut(s) | 38 |
| BisI | GCNGC | 1 cut(s) | 237 |
| BlsI | GCNGC | 1 cut(s) | 238 |
| BmiI | GGNNCC | 1 cut(s) | 161 |
| BmsI | GCATC | 1 cut(s) | 187 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 206, 238 |
| Bpu10I | CCTNAGC | 1 cut(s) | 321 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 133, 163 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 130, 173 |
| BseGI | GGATG | 1 cut(s) | 202 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 130, 173 |
| BseMII | CTCAG | 1 cut(s) | 335 |
| BseRI | GAGGAG | 2 cut(s) | 138, 156 |
| BseXI | GCAGC | 1 cut(s) | 248 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 130, 173 |
| BsmAI | GTCTC | 1 cut(s) | 209 |
| Bsp143I | GATC | 2 cut(s) | 40, 159 |
| BspACI | CCGC | 1 cut(s) | 305 |
| BspCNI | CTCAG | 1 cut(s) | 334 |
| BspHI | TCATGA | 1 cut(s) | 21 |
| BspLI | GGNNCC | 1 cut(s) | 161 |
| BspPI | GGATC | 3 cut(s) | 35, 154, 167 |
| BssMI | GATC | 2 cut(s) | 40, 159 |
| Bst4CI | ACNGT | 1 cut(s) | 99 |
| Bst6I | CTCTTC | 1 cut(s) | 75 |
| BstC8I | GCNNGC | 1 cut(s) | 75 |
| BstDEI | CTNAG | 1 cut(s) | 321 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 171 |
| BstF5I | GGATG | 1 cut(s) | 202 |
| BstKTI | GATC | 2 cut(s) | 43, 162 |
| BstMAI | GTCTC | 1 cut(s) | 209 |
| BstMBI | GATC | 2 cut(s) | 40, 159 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 302, 311 |
| BstV1I | GCAGC | 1 cut(s) | 248 |
| BstX2I | RGATCY | 2 cut(s) | 40, 159 |
| BstYI | RGATCY | 2 cut(s) | 40, 159 |
| BtsCI | GGATG | 1 cut(s) | 202 |
| BtsI | GCAGTG | 1 cut(s) | 141 |
| BtsIMutI | CAGTG | 1 cut(s) | 141 |
| Cac8I | GCNNGC | 1 cut(s) | 75 |
| CciI | TCATGA | 1 cut(s) | 21 |
| CviAII | CATG | 1 cut(s) | 22 |
| CviJI | RGCY | 9 cut(s) | 30, 65, 180, 239, 261, 296, 320, 339, 386 |
| CviKI_1 | RGCY | 9 cut(s) | 30, 65, 180, 239, 261, 296, 320, 339, 386 |
| DdeI | CTNAG | 1 cut(s) | 321 |
| DpnI | GATC | 2 cut(s) | 42, 161 |
| DpnII | GATC | 2 cut(s) | 40, 159 |
| DraI | TTTAAA | 1 cut(s) | 267 |
| Eam1104I | CTCTTC | 1 cut(s) | 75 |
| EarI | CTCTTC | 1 cut(s) | 75 |
| Eco57I | CTGAAG | 1 cut(s) | 336 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 171 |
| FaeI | CATG | 1 cut(s) | 25 |
| FaiI | YATR | 5 cut(s) | 23, 71, 127, 171, 406 |
| FatI | CATG | 1 cut(s) | 21 |
| Fnu4HI | GCNGC | 1 cut(s) | 237 |
| FokI | GGATG | 1 cut(s) | 209 |
| Fsp4HI | GCNGC | 1 cut(s) | 237 |
| FspBI | CTAG | 1 cut(s) | 38 |
| GluI | GCNGC | 1 cut(s) | 237 |
| Hin1II | CATG | 1 cut(s) | 25 |
| HindIII | AAGCTT | 1 cut(s) | 28 |
| HinfI | GANTC | 3 cut(s) | 208, 251, 308 |
| Hpy166II | GTNNAC | 1 cut(s) | 369 |
| Hpy188III | TCNNGA | 6 cut(s) | 22, 38, 57, 212, 248, 380 |
| Hpy8I | GTNNAC | 1 cut(s) | 369 |
| HpyAV | CCTTC | 2 cut(s) | 251, 404 |
| HpyCH4III | ACNGT | 1 cut(s) | 99 |
| HpyCH4V | TGCA | 2 cut(s) | 73, 200 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 302, 311 |
| HpyF3I | CTNAG | 1 cut(s) | 321 |
| Hsp92II | CATG | 1 cut(s) | 25 |
| Kzo9I | GATC | 2 cut(s) | 40, 159 |
| LmnI | GCTCC | 2 cut(s) | 143, 151 |
| LpnPI | CCDG | 6 cut(s) | 59, 159, 243, 278, 308, 320 |
| Lsp1109I | GCAGC | 1 cut(s) | 248 |
| LweI | GCATC | 1 cut(s) | 187 |
| MaeI | CTAG | 1 cut(s) | 38 |
| MalI | GATC | 2 cut(s) | 42, 161 |
| MboI | GATC | 2 cut(s) | 40, 159 |
| MboII | GAAGA | 3 cut(s) | 92, 236, 323 |
| MflI | RGATCY | 2 cut(s) | 40, 159 |
| MluCI | AATT | 1 cut(s) | 186 |
| MnlI | CCTC | 4 cut(s) | 159, 174, 177, 408 |
| MseI | TTAA | 3 cut(s) | 189, 266, 341 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 302, 311 |
| NdeII | GATC | 2 cut(s) | 40, 159 |
| NlaIII | CATG | 1 cut(s) | 25 |
| NlaIV | GGNNCC | 1 cut(s) | 161 |
| PagI | TCATGA | 1 cut(s) | 21 |
| PfeI | GAWTC | 3 cut(s) | 208, 251, 308 |
| PkrI | GCNGC | 1 cut(s) | 238 |
| PshBI | ATTAAT | 1 cut(s) | 189 |
| PsiI | TTATAA | 1 cut(s) | 406 |
| PspN4I | GGNNCC | 1 cut(s) | 161 |
| PsuI | RGATCY | 2 cut(s) | 40, 159 |
| SaqAI | TTAA | 3 cut(s) | 189, 266, 341 |
| SatI | GCNGC | 1 cut(s) | 237 |
| Sau3AI | GATC | 2 cut(s) | 40, 159 |
| SetI | ASST | 6 cut(s) | 32, 67, 178, 182, 322, 388 |
| SfaNI | GCATC | 1 cut(s) | 187 |
| Sse9I | AATT | 1 cut(s) | 186 |
| SsiI | CCGC | 1 cut(s) | 305 |
| SspMI | CTAG | 1 cut(s) | 38 |
| TaaI | ACNGT | 1 cut(s) | 99 |
| TaqI | TCGA | 1 cut(s) | 247 |
| TasI | AATT | 1 cut(s) | 186 |
| TfiI | GAWTC | 3 cut(s) | 208, 251, 308 |
| Tru1I | TTAA | 3 cut(s) | 189, 266, 341 |
| Tru9I | TTAA | 3 cut(s) | 189, 266, 341 |
| TscAI | CASTG | 1 cut(s) | 148 |
| TseI | GCWGC | 1 cut(s) | 236 |
| TspDTI | ATGAA | 2 cut(s) | 10, 243 |
| TspGWI | ACGGA | 2 cut(s) | 141, 209 |
| TspRI | CASTG | 1 cut(s) | 148 |
| VspI | ATTAAT | 1 cut(s) | 189 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 171 |
| XbaI | TCTAGA | 1 cut(s) | 37 |
| XspI | CTAG | 1 cut(s) | 38 |