Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 15 - 101 | 3.9e-09 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 262 |
| AccII | CGCG | 1 cut(s) | 28 |
| AciI | CCGC | 2 cut(s) | 28, 62 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 205 |
| AgsI | TTSAA | 2 cut(s) | 373, 431 |
| AleI | CACNNNNGTG | 1 cut(s) | 558 |
| AloI | GAACNNNNNNTCC | 1 cut(s) | 28 |
| AluBI | AGCT | 2 cut(s) | 106, 168 |
| AluI | AGCT | 2 cut(s) | 106, 168 |
| Ama87I | CYCGRG | 1 cut(s) | 210 |
| AoxI | GGCC | 1 cut(s) | 344 |
| ApeKI | GCWGC | 5 cut(s) | 20, 23, 53, 56, 59 |
| AspLEI | GCGC | 1 cut(s) | 28 |
| AspS9I | GGNCC | 1 cut(s) | 345 |
| AsuC2I | CCSGG | 1 cut(s) | 200 |
| AvaI | CYCGRG | 1 cut(s) | 210 |
| BanI | GGYRCC | 1 cut(s) | 262 |
| BbvI | GCAGC | 5 cut(s) | 7, 10, 40, 68, 71 |
| BccI | CCATC | 3 cut(s) | 246, 358, 410 |
| BclI | TGATCA | 1 cut(s) | 511 |
| BcnI | CCSGG | 1 cut(s) | 200 |
| BfaI | CTAG | 2 cut(s) | 165, 569 |
| BfmI | CTRYAG | 1 cut(s) | 54 |
| BisI | GCNGC | 6 cut(s) | 21, 24, 29, 54, 57, 60 |
| BlsI | GCNGC | 6 cut(s) | 22, 25, 30, 55, 58, 61 |
| Bme1390I | CCNGG | 1 cut(s) | 200 |
| BmeT110I | CYCGRG | 1 cut(s) | 210 |
| BmgT120I | GGNCC | 1 cut(s) | 345 |
| BmiI | GGNNCC | 2 cut(s) | 264, 347 |
| BmrFI | CCNGG | 1 cut(s) | 200 |
| BmsI | GCATC | 3 cut(s) | 40, 136, 308 |
| BpuMI | CCSGG | 1 cut(s) | 200 |
| Bsa29I | ATCGAT | 1 cut(s) | 302 |
| BsaAI | YACGTR | 1 cut(s) | 556 |
| BsaJI | CCNNGG | 2 cut(s) | 141, 266 |
| BsaXI | ACNNNNNCTCC | 1 cut(s) | 26 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 205 |
| Bse3DI | GCAATG | 1 cut(s) | 516 |
| BseCI | ATCGAT | 1 cut(s) | 302 |
| BseDI | CCNNGG | 2 cut(s) | 141, 266 |
| BseGI | GGATG | 3 cut(s) | 31, 151, 397 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 205 |
| BseMI | GCAATG | 1 cut(s) | 516 |
| BseXI | GCAGC | 5 cut(s) | 7, 10, 40, 68, 71 |
| BseYI | CCCAGC | 1 cut(s) | 106 |
| BsgI | GTGCAG | 2 cut(s) | 109, 120 |
| Bsh1236I | CGCG | 1 cut(s) | 28 |
| BshFI | GGCC | 1 cut(s) | 346 |
| BshNI | GGYRCC | 1 cut(s) | 262 |
| BshVI | ATCGAT | 1 cut(s) | 302 |
| BsiHKCI | CYCGRG | 1 cut(s) | 210 |
| BsiSI | CCGG | 1 cut(s) | 200 |
| BslFI | GGGAC | 1 cut(s) | 458 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 205 |
| BsmFI | GGGAC | 1 cut(s) | 458 |
| BsnI | GGCC | 1 cut(s) | 346 |
| BsoBI | CYCGRG | 1 cut(s) | 210 |
| Bsp143I | GATC | 1 cut(s) | 511 |
| BspACI | CCGC | 2 cut(s) | 28, 62 |
| BspANI | GGCC | 1 cut(s) | 346 |
| BspDI | ATCGAT | 1 cut(s) | 302 |
| BspFNI | CGCG | 1 cut(s) | 28 |
| BspHI | TCATGA | 1 cut(s) | 508 |
| BspLI | GGNNCC | 2 cut(s) | 264, 347 |
| BspMAI | CTGCAG | 1 cut(s) | 58 |
| BspT107I | GGYRCC | 1 cut(s) | 262 |
| BsrDI | GCAATG | 1 cut(s) | 516 |
| BssECI | CCNNGG | 2 cut(s) | 141, 266 |
| BssMI | GATC | 1 cut(s) | 511 |
| BssT1I | CCWWGG | 1 cut(s) | 141 |
| Bst4CI | ACNGT | 2 cut(s) | 222, 270 |
| BstBAI | YACGTR | 1 cut(s) | 556 |
| BstC8I | GCNNGC | 3 cut(s) | 92, 170, 207 |
| BstDEI | CTNAG | 1 cut(s) | 462 |
| BstDSI | CCRYGG | 1 cut(s) | 266 |
| BstF5I | GGATG | 3 cut(s) | 31, 151, 397 |
| BstFNI | CGCG | 1 cut(s) | 28 |
| BstHHI | GCGC | 1 cut(s) | 28 |
| BstKTI | GATC | 1 cut(s) | 514 |
| BstMBI | GATC | 1 cut(s) | 511 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 50, 59, 65 |
| BstSCI | CCNGG | 1 cut(s) | 198 |
| BstSFI | CTRYAG | 1 cut(s) | 54 |
| BstUI | CGCG | 1 cut(s) | 28 |
| BstV1I | GCAGC | 5 cut(s) | 7, 10, 40, 68, 71 |
| Bsu15I | ATCGAT | 1 cut(s) | 302 |
| BsuRI | GGCC | 1 cut(s) | 346 |
| BsuTUI | ATCGAT | 1 cut(s) | 302 |
| BtgI | CCRYGG | 1 cut(s) | 266 |
| BtsCI | GGATG | 3 cut(s) | 31, 151, 397 |
| BtsI | GCAGTG | 1 cut(s) | 407 |
| BtsIMutI | CAGTG | 1 cut(s) | 407 |
| Cac8I | GCNNGC | 3 cut(s) | 92, 170, 207 |
| CciI | TCATGA | 1 cut(s) | 508 |
| CfoI | GCGC | 1 cut(s) | 28 |
| Cfr13I | GGNCC | 1 cut(s) | 345 |
| ClaI | ATCGAT | 1 cut(s) | 302 |
| CviAII | CATG | 1 cut(s) | 509 |
| DdeI | CTNAG | 1 cut(s) | 462 |
| DpnI | GATC | 1 cut(s) | 513 |
| DpnII | GATC | 1 cut(s) | 511 |
| Eco130I | CCWWGG | 1 cut(s) | 141 |
| Eco88I | CYCGRG | 1 cut(s) | 210 |
| EcoO109I | RGGNCCY | 1 cut(s) | 345 |
| EcoT14I | CCWWGG | 1 cut(s) | 141 |
| ErhI | CCWWGG | 1 cut(s) | 141 |
| FaeI | CATG | 1 cut(s) | 512 |
| FaiI | YATR | 6 cut(s) | 120, 179, 196, 366, 510, 559 |
| FaqI | GGGAC | 1 cut(s) | 458 |
| FatI | CATG | 1 cut(s) | 508 |
| FbaI | TGATCA | 1 cut(s) | 511 |
| Fnu4HI | GCNGC | 6 cut(s) | 21, 24, 29, 54, 57, 60 |
| FokI | GGATG | 3 cut(s) | 18, 158, 384 |
| Fsp4HI | GCNGC | 6 cut(s) | 21, 24, 29, 54, 57, 60 |
| FspBI | CTAG | 2 cut(s) | 165, 569 |
| GlaI | GCGC | 1 cut(s) | 27 |
| GluI | GCNGC | 6 cut(s) | 21, 24, 29, 54, 57, 60 |
| GsaI | CCCAGC | 1 cut(s) | 110 |
| HaeIII | GGCC | 1 cut(s) | 346 |
| HapII | CCGG | 1 cut(s) | 200 |
| HhaI | GCGC | 1 cut(s) | 28 |
| Hin1II | CATG | 1 cut(s) | 512 |
| Hin6I | GCGC | 1 cut(s) | 26 |
| HinP1I | GCGC | 1 cut(s) | 26 |
| HinfI | GANTC | 3 cut(s) | 131, 137, 545 |
| HpaII | CCGG | 1 cut(s) | 200 |
| Hpy188I | TCNGA | 2 cut(s) | 136, 316 |
| Hpy188III | TCNNGA | 2 cut(s) | 128, 509 |
| HpyAV | CCTTC | 2 cut(s) | 57, 559 |
| HpyCH4III | ACNGT | 2 cut(s) | 222, 270 |
| HpyCH4IV | ACGT | 1 cut(s) | 555 |
| HpyCH4V | TGCA | 5 cut(s) | 56, 82, 90, 101, 299 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 50, 59, 65 |
| HpyF3I | CTNAG | 1 cut(s) | 462 |
| HpySE526I | ACGT | 1 cut(s) | 555 |
| Hsp92II | CATG | 1 cut(s) | 512 |
| HspAI | GCGC | 1 cut(s) | 26 |
| Ksp22I | TGATCA | 1 cut(s) | 511 |
| Kzo9I | GATC | 1 cut(s) | 511 |
| LmnI | GCTCC | 1 cut(s) | 49 |
| LpnPI | CCDG | 5 cut(s) | 76, 92, 113, 191, 213 |
| Lsp1109I | GCAGC | 5 cut(s) | 7, 10, 40, 68, 71 |
| LweI | GCATC | 3 cut(s) | 40, 136, 308 |
| MaeI | CTAG | 2 cut(s) | 165, 569 |
| MaeII | ACGT | 1 cut(s) | 555 |
| MaeIII | GTNAC | 1 cut(s) | 571 |
| MalI | GATC | 1 cut(s) | 513 |
| MboI | GATC | 1 cut(s) | 511 |
| MboII | GAAGA | 1 cut(s) | 345 |
| MfeI | CAATTG | 1 cut(s) | 468 |
| MluCI | AATT | 3 cut(s) | 123, 294, 468 |
| MlyI | GAGTC | 2 cut(s) | 131, 539 |
| MnlI | CCTC | 3 cut(s) | 58, 184, 405 |
| MseI | TTAA | 1 cut(s) | 153 |
| MslI | CAYNNNNRTG | 1 cut(s) | 558 |
| MspA1I | CMGCKG | 1 cut(s) | 62 |
| MspI | CCGG | 1 cut(s) | 200 |
| MspR9I | CCNGG | 1 cut(s) | 200 |
| MunI | CAATTG | 1 cut(s) | 468 |
| MvnI | CGCG | 1 cut(s) | 28 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 50, 59, 65 |
| NciI | CCSGG | 1 cut(s) | 200 |
| NdeII | GATC | 1 cut(s) | 511 |
| NlaIII | CATG | 1 cut(s) | 512 |
| NlaIV | GGNNCC | 2 cut(s) | 264, 347 |
| OliI | CACNNNNGTG | 1 cut(s) | 558 |
| PagI | TCATGA | 1 cut(s) | 508 |
| PfeI | GAWTC | 1 cut(s) | 131 |
| PkrI | GCNGC | 6 cut(s) | 22, 25, 30, 55, 58, 61 |
| PleI | GAGTC | 2 cut(s) | 131, 539 |
| PpsI | GAGTC | 2 cut(s) | 131, 539 |
| Ppu21I | YACGTR | 1 cut(s) | 556 |
| PspFI | CCCAGC | 1 cut(s) | 106 |
| PspN4I | GGNNCC | 2 cut(s) | 264, 347 |
| PspPI | GGNCC | 1 cut(s) | 345 |
| PstI | CTGCAG | 1 cut(s) | 58 |
| RseI | CAYNNNNRTG | 1 cut(s) | 558 |
| SaqAI | TTAA | 1 cut(s) | 153 |
| SatI | GCNGC | 6 cut(s) | 21, 24, 29, 54, 57, 60 |
| Sau3AI | GATC | 1 cut(s) | 511 |
| Sau96I | GGNCC | 1 cut(s) | 345 |
| SchI | GAGTC | 2 cut(s) | 131, 539 |
| ScrFI | CCNGG | 1 cut(s) | 200 |
| SetI | ASST | 6 cut(s) | 108, 119, 170, 391, 500, 558 |
| SfaNI | GCATC | 3 cut(s) | 40, 136, 308 |
| SfcI | CTRYAG | 1 cut(s) | 54 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 558 |
| Sse9I | AATT | 3 cut(s) | 123, 294, 468 |
| SsiI | CCGC | 2 cut(s) | 28, 62 |
| SspMI | CTAG | 2 cut(s) | 165, 569 |
| StyD4I | CCNGG | 1 cut(s) | 198 |
| StyI | CCWWGG | 1 cut(s) | 141 |
| TaaI | ACNGT | 2 cut(s) | 222, 270 |
| TaiI | ACGT | 1 cut(s) | 558 |
| TaqI | TCGA | 1 cut(s) | 302 |
| TasI | AATT | 3 cut(s) | 123, 294, 468 |
| TauI | GCSGC | 1 cut(s) | 31 |
| TfiI | GAWTC | 1 cut(s) | 131 |
| Tru1I | TTAA | 1 cut(s) | 153 |
| Tru9I | TTAA | 1 cut(s) | 153 |
| TscAI | CASTG | 1 cut(s) | 414 |
| TseI | GCWGC | 5 cut(s) | 20, 23, 53, 56, 59 |
| TspDTI | ATGAA | 1 cut(s) | 497 |
| TspGWI | ACGGA | 1 cut(s) | 396 |
| TspRI | CASTG | 1 cut(s) | 414 |
| XspI | CTAG | 2 cut(s) | 165, 569 |