FvH4_3g32402

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000093
Physical Location & Seq
Forward (+)
27698020 .. 27703201
5182 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g32402.t1

Sequence Viewer

Length: 861 bp
ATGGTTGAGGTCATTGAAACCCCAGAACCACAAAACACCGAACTCATTCCTTCATCTAAAGACAAAGATGTGAATGATTTTGACACACCCAACCCTTTGACCTTACACCCATCTGATACACTAGGGCTCAAACTGGTTAGTACACTGCTGGACGGAAACAACTATGGAGAATGGAGCCGAGCTATGTGCCTTAGCCTCAACGCCAAGAACAAGATAGGACTGATTGATGGTACAATCAAACCACCTCCACGCACCGATCCAAGGTTCCCTATGTGGAAGTGCTGCAACGACATGGTATTGTCATGGATCGTTCATTCGATTCAACCAAGCATCGCGCGTGGAGTGATCTTCTCAGATACGACATTTGGGGTGTGGAGAGATCTCCATGATTTATTCTCTCAAAGAGATGATTCAAGGATTTATCAAATTCGGCAAGAGATCGCCGAGTCTAGAAACAGCGGAAGGGTAATCGGAGGTTTGGCTGAAGCTGCAGTCATCCCTTCCGTTGAAGGCGCCGAAGCCGAGGCCATCCTTAGAGGAGTGGAGCTAGCAATTTCTTTGAACCTGAAACAGATTATTGTTGAATCAGATTCCAAACAATTAATCTCAGAACTTTTGAATTCATCTGTGAGAAGCTGGAGGACTTACCCAGCATTGGAGACAATAAGAAGACGAAGTCTGATGTTTGATCGATGTACTTGGAACTGGACACCAAGATCGACAAATCAAGCTGCTCACCATGCAGCTATGCTTGCCAGGCGGACTGAGGATCCTCTGCGATGGGCTGAAGAGCCACCTCTTTCCATGGTTTCTGTACTGCGCAATGATGGCTTGCCCTGTCCCCCGCCGACGACTGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

287

Amino Acids

32.1

Weight (kDa)

5.49

Isoelectric Point (pI)

46.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotran_gag_3 PF14244 36 - 83 3.2e-18 gag-polypeptide of LTR copia-type
RVT_3 PF13456 154 - 250 1.7e-15 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000093)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G09490
fragaria_vesca FvH4_1g23791 FvH4_2g01641 FvH4_2g04612 FvH4_2g06831 FvH4_2g07841 FvH4_2g13581 FvH4_2g27220 FvH4_2g30621 FvH4_2g34753 FvH4_3g10392 FvH4_3g24291 FvH4_3g25030 FvH4_3g29361 FvH4_3g31372 FvH4_3g32402 FvH4_3g43651 FvH4_4g03830 FvH4_4g05481 FvH4_4g20431 FvH4_4g21421 FvH4_4g25931 FvH4_5g08801 FvH4_5g21021 FvH4_5g26254 FvH4_5g30931 FvH4_5g31281 FvH4_5g33581 FvH4_5g35622 FvH4_6g02100 FvH4_6g07963 FvH4_6g11620 FvH4_6g16031 FvH4_6g19041 FvH4_6g24211 FvH4_6g24271 FvH4_6g30670 FvH4_6g49540 FvH4_7g25914
malus_domestica MD03G1245200.v1.1 MD04G1168000.v1.1 MD09G1242600.v1.1 MD15G1334000.v1.1 MD17G1165700.v1.1
prunus_persica Prupe.1G073500_v2.0.a1 Prupe.1G283700_v2.0.a1 Prupe.1G524100_v2.0.a1 Prupe.2G022700_v2.0.a1 Prupe.2G022800_v2.0.a1 Prupe.2G022800_v2.0.a1 Prupe.2G044300_v2.0.a1 Prupe.2G048800_v2.0.a1 Prupe.2G092000_v2.0.a1 Prupe.2G216500_v2.0.a1 Prupe.2G216600_v2.0.a1 Prupe.2G216600_v2.0.a1 Prupe.3G103400_v2.0.a1 Prupe.3G143300_v2.0.a1 Prupe.3G190000_v2.0.a1 Prupe.3G219800_v2.0.a1 Prupe.4G177800_v2.0.a1 Prupe.4G261300_v2.0.a1 Prupe.5G044600_v2.0.a1 Prupe.5G067400_v2.0.a1 Prupe.7G083900_v2.0.a1 Prupe.7G120900_v2.0.a1 Prupe.8G032200_v2.0.a1 Prupe.8G036100_v2.0.a1 Prupe.8G042700_v2.0.a1
pyrus_communis pycom01g21710 pycom02g19770 pycom03g05120 pycom05g01370 pycom05g08780 pycom05g10120 pycom07g01370 pycom07g05930 pycom08g15760 pycom08g18090 pycom08g21060 pycom09g03880 pycom10g03870 pycom13g22240 pycom16g05120 pycom16g17170 pycom17g12180 pycom17g16290 pycom17g21230 pycom17g24990 pycom215g00100
rosa_chinensis RchiOBHm_Chr1g0323031 RchiOBHm_Chr1g0324391 RchiOBHm_Chr1g0326401 RchiOBHm_Chr1g0327811 RchiOBHm_Chr1g0332521 RchiOBHm_Chr1g0336501 RchiOBHm_Chr1g0346021 RchiOBHm_Chr1g0347191 RchiOBHm_Chr1g0367181 RchiOBHm_Chr2g0089441 RchiOBHm_Chr2g0115441 RchiOBHm_Chr3g0490691 RchiOBHm_Chr4g0395251 RchiOBHm_Chr4g0398081 RchiOBHm_Chr4g0409451 RchiOBHm_Chr4g0413041 RchiOBHm_Chr4g0415471 RchiOBHm_Chr4g0420961 RchiOBHm_Chr5g0040301 RchiOBHm_Chr5g0070651 RchiOBHm_Chr6g0263011 RchiOBHm_Chr6g0270721 RchiOBHm_Chr6g0277111 RchiOBHm_Chr7g0179771 RchiOBHm_Chr7g0223051 RchiOBHm_Chr7g0225031 RchiOBHm_Chr7g0225091
rosa_laevigata RLG00000001668 RLG00000001672 RLG00000001676 RLG00000007762 RLG00000008994 RLG00000011117 RLG00000013729 RLG00000013839 RLG00000014759 RLG00000016638 RLG00000018535 RLG00000018614 RLG00000018646 RLG00000020679 RLG00000023337 RLG00000029348 RLG00000035891 RLG00000035912
rosa_multiflora Rmu_co8152500.1_g000001 Rmu_co8203314.1_g000001 Rmu_co8383183.1_g000001 Rmu_sc0000293.1_g000033 Rmu_sc0000367.1_g000226 Rmu_sc0000512.1_g000023 Rmu_sc0000594.1_g000059 Rmu_sc0000654.1_g000022 Rmu_sc0000654.1_g000047 Rmu_sc0000706.1_g000037 Rmu_sc0001348.1_g000008 Rmu_sc0001385.1_g000024 Rmu_sc0001405.1_g000002 Rmu_sc0001521.1_g000048 Rmu_sc0001932.1_g000008 Rmu_sc0001932.1_g000009 Rmu_sc0002535.1_g000011 Rmu_sc0002908.1_g000019 Rmu_sc0003709.1_g000004 Rmu_sc0003882.1_g000054 Rmu_sc0004035.1_g000007 Rmu_sc0004041.1_g000007 Rmu_sc0004288.1_g000011 Rmu_sc0004569.1_g000004 Rmu_sc0004677.1_g000016 Rmu_sc0004834.1_g000010 Rmu_sc0005193.1_g000008 Rmu_sc0005354.1_g000009 Rmu_sc0006514.1_g000021 Rmu_sc0006691.1_g000001 Rmu_sc0006888.1_g000021 Rmu_sc0006889.1_g000013 Rmu_sc0008096.1_g000017 Rmu_sc0008378.1_g000003 Rmu_sc0009127.1_g000005 Rmu_sc0009191.1_g000016 Rmu_sc0009687.1_g000018 Rmu_sc0009709.1_g000005 Rmu_sc0009880.1_g000015 Rmu_sc0011710.1_g000001 Rmu_sc0012615.1_g000004 Rmu_sc0016091.1_g000002 Rmu_sc0022339.1_g000006 Rmu_sc0026537.1_g000002 Rmu_sc0027689.1_g000002 Rmu_sc0036222.1_g000001 Rmu_sc0040890.1_g000001 Rmu_ssc0000148.1_g000006 Rmu_ssc0000151.1_g000017 Rmu_ssc0000404.1_g000018 Rmu_ssc0000449.1_g000009
rosa_roxburghii Rroxscaffold_1G00017760 Rroxscaffold_1G00059150 Rroxscaffold_2G00142560 Rroxscaffold_3G00220440 Rroxscaffold_3G00231700 Rroxscaffold_3G00232400 Rroxscaffold_3G00274510 Rroxscaffold_4G00288790 Rroxscaffold_4G00305680 Rroxscaffold_4G00314880 Rroxscaffold_4G00314900 Rroxscaffold_5G00334590 Rroxscaffold_6G00394110 Rroxscaffold_6G00415860 Rroxscaffold_7G00168240 Rroxscaffold_7G00204400 Rroxscaffold_7G00207840
rosa_rugosa Rorug01G0034900 Rorug02G0079500 Rorug02G0229000 Rorug02G0229100 Rorug02G0291400 Rorug02G0298800 Rorug03G0046400 Rorug03G0064700 Rorug03G0077300 Rorug03G0199000 Rorug03G0200400 Rorug04G0205200 Rorug05G0025400 Rorug05G0127400 Rorug05G0192100 Rorug05G0453400 Rorug05G0538300 Rorug06G0035200 Rorug06G0241000 Rorug06G0268300 Rorug07G0120300 Rorug07G0145000 Rorug07G0209100 Rorug07G0240500 Rorug07G0271700
rosa_samantha Rh1AG179100 Rh1BG106900 Rh1BG163400 Rh1BG163500 Rh1BG323500 Rh2CG447900 Rh2DG503700 Rh3AG293600 Rh3CG229100 Rh3DG221500 Rh4AG106000 Rh4BG267700 Rh4CG062500 Rh4CG090100 Rh4CG114800 Rh5AG038400 Rh5BG395400 Rh5CG441700 Rh5CG572000 Rh6AG222400 Rh6AG264500 Rh6BG137400 Rh6BG225700 Rh6CG144300 Rh6DG087600 Rh6DG096000 Rh6DG362400 Rh6DG390200 Rh7AG207500 Rh7AG324700 Rh7AG388800 Rh7AG437100 Rh7BG019000 Rh7BG374600 Rh7CG028700 Rh7CG341500 Rh7CG408000 Rh7CG408300 Rh7DG354600
rosa_wichuraiana Rw0G009630 Rw0G012170 Rw4G022700 Rw5G028420 Rw5G029490 Rw6G007220 Rw6G007410 Rw6G017880 Rw7G012440 Rw7G021830 Rw7G027490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 821
AccB1I GGYRCC 1 cut(s) 512
AccII CGCG 2 cut(s) 335, 337
AciI CCGC 3 cut(s) 459, 760, 845
AclWI GGATC 4 cut(s) 251, 314, 764, 777
AcsI RAATTY 2 cut(s) 426, 619
AcuI CTGAAG 2 cut(s) 504, 807
AcyI GRCGYC 1 cut(s) 513
AfaI GTAC 4 cut(s) 142, 232, 697, 816
AfiI CCNNNNNNNGG 2 cut(s) 261, 655
AgsI TTSAA 7 cut(s) 17, 323, 414, 509, 562, 584, 619
AjnI CCWGG 1 cut(s) 755
AluBI AGCT 6 cut(s) 182, 488, 547, 636, 731, 746
AluI AGCT 6 cut(s) 182, 488, 547, 636, 731, 746
Alw26I GTCTC 1 cut(s) 653
AlwI GGATC 4 cut(s) 251, 314, 764, 777
AoxI GGCC 1 cut(s) 525
ApeKI GCWGC 4 cut(s) 282, 488, 731, 743
ApoI RAATTY 2 cut(s) 426, 619
AseI ATTAAT 1 cut(s) 602
Asp700I GAANNNNTTC 1 cut(s) 45
AspLEI GCGC 3 cut(s) 337, 515, 822
AsuHPI GGTGA 1 cut(s) 728
AsuNHI GCTAGC 1 cut(s) 547
BamHI GGATCC 1 cut(s) 769
BanI GGYRCC 1 cut(s) 512
BanII GRGCYC 1 cut(s) 129
BbsI GAAGAC 1 cut(s) 676
BbvI GCAGC 4 cut(s) 269, 475, 718, 755
BccI CCATC 5 cut(s) 118, 221, 536, 774, 821
BcgI CGANNNNNNTGC 2 cut(s) 168, 202
BciT130I CCWGG 1 cut(s) 757
BcoDI GTCTC 1 cut(s) 653
BfaI CTAG 3 cut(s) 122, 450, 548
BfmI CTRYAG 1 cut(s) 489
BfoI RGCGCY 1 cut(s) 516
BglII AGATCT 1 cut(s) 379
BisI GCNGC 4 cut(s) 283, 489, 732, 744
BlsI GCNGC 4 cut(s) 284, 490, 733, 745
Bme1390I CCNGG 1 cut(s) 757
BmiI GGNNCC 4 cut(s) 176, 266, 514, 771
BmrFI CCNGG 1 cut(s) 757
BmsI GCATC 1 cut(s) 339
BmtI GCTAGC 1 cut(s) 551
BpiI GAAGAC 1 cut(s) 676
BpmI CTGGAG 1 cut(s) 658
Bpu10I CCTNAGC 1 cut(s) 191
Bsa29I ATCGAT 1 cut(s) 691
BsaHI GRCGYC 1 cut(s) 513
BsaJI CCNNGG 3 cut(s) 260, 522, 804
Bsc4I CCNNNNNNNGG 2 cut(s) 261, 655
Bse1I ACTGG 2 cut(s) 138, 710
Bse3DI GCAATG 1 cut(s) 829
BseBI CCWGG 1 cut(s) 757
BseCI ATCGAT 1 cut(s) 691
BseDI CCNNGG 3 cut(s) 260, 522, 804
BseGI GGATG 2 cut(s) 495, 528
BseLI CCNNNNNNNGG 2 cut(s) 261, 655
BseMI GCAATG 1 cut(s) 829
BseMII CTCAG 3 cut(s) 366, 621, 756
BseNI ACTGG 2 cut(s) 138, 710
BseRI GAGGAG 1 cut(s) 552
BseXI GCAGC 4 cut(s) 269, 475, 718, 755
BseYI CCCAGC 1 cut(s) 649
Bsh1236I CGCG 2 cut(s) 335, 337
BshFI GGCC 1 cut(s) 527
BshNI GGYRCC 1 cut(s) 512
BshVI ATCGAT 1 cut(s) 691
BslFI GGGAC 1 cut(s) 825
BslI CCNNNNNNNGG 2 cut(s) 261, 655
BsmAI GTCTC 1 cut(s) 653
BsmFI GGGAC 1 cut(s) 825
BsnI GGCC 1 cut(s) 527
Bsp1286I GDGCHC 1 cut(s) 129
Bsp143I GATC 8 cut(s) 256, 306, 345, 379, 438, 688, 716, 769
Bsp19I CCATGG 1 cut(s) 804
BspACI CCGC 3 cut(s) 459, 760, 845
BspANI GGCC 1 cut(s) 527
BspCNI CTCAG 3 cut(s) 365, 620, 757
BspDI ATCGAT 1 cut(s) 691
BspFNI CGCG 2 cut(s) 335, 337
BspLI GGNNCC 4 cut(s) 176, 266, 514, 771
BspMAI CTGCAG 1 cut(s) 493
BspOI GCTAGC 1 cut(s) 551
BspPI GGATC 4 cut(s) 251, 314, 764, 777
BspQI GCTCTTC 1 cut(s) 783
BspT107I GGYRCC 1 cut(s) 512
BsrDI GCAATG 1 cut(s) 829
BsrI ACTGG 2 cut(s) 138, 710
BssECI CCNNGG 3 cut(s) 260, 522, 804
BssMI GATC 8 cut(s) 256, 306, 345, 379, 438, 688, 716, 769
BssNI GRCGYC 1 cut(s) 513
BssT1I CCWWGG 2 cut(s) 260, 804
Bst2UI CCWGG 1 cut(s) 757
Bst6I CTCTTC 1 cut(s) 783
BstACI GRCGYC 1 cut(s) 513
BstC8I GCNNGC 3 cut(s) 549, 753, 833
BstDEI CTNAG 5 cut(s) 191, 352, 533, 607, 765
BstDSI CCRYGG 1 cut(s) 804
BstF5I GGATG 2 cut(s) 495, 528
BstFNI CGCG 2 cut(s) 335, 337
BstH2I RGCGCY 1 cut(s) 516
BstHHI GCGC 3 cut(s) 337, 515, 822
BstKTI GATC 8 cut(s) 259, 309, 348, 382, 441, 691, 719, 772
BstMAI GTCTC 1 cut(s) 653
BstMBI GATC 8 cut(s) 256, 306, 345, 379, 438, 688, 716, 769
BstMWI GCNNNNNNNGC 5 cut(s) 488, 740, 752, 757, 828
BstNI CCWGG 1 cut(s) 757
BstSCI CCNGG 1 cut(s) 755
BstSFI CTRYAG 1 cut(s) 489
BstUI CGCG 2 cut(s) 335, 337
BstV1I GCAGC 4 cut(s) 269, 475, 718, 755
BstV2I GAAGAC 1 cut(s) 676
BstX2I RGATCY 2 cut(s) 379, 769
BstYI RGATCY 2 cut(s) 379, 769
Bsu15I ATCGAT 1 cut(s) 691
BsuRI GGCC 1 cut(s) 527
BsuTUI ATCGAT 1 cut(s) 691
BtgI CCRYGG 1 cut(s) 804
BtgZI GCGATG 2 cut(s) 316, 793
BtsCI GGATG 2 cut(s) 495, 528
BtsI GCAGTG 1 cut(s) 143
BtsIMutI CAGTG 1 cut(s) 143
Cac8I GCNNGC 3 cut(s) 549, 753, 833
CfoI GCGC 3 cut(s) 337, 515, 822
ClaI ATCGAT 1 cut(s) 691
Csp6I GTAC 4 cut(s) 141, 231, 696, 815
CviAII CATG 5 cut(s) 292, 303, 386, 740, 805
CviQI GTAC 4 cut(s) 141, 231, 696, 815
DdeI CTNAG 5 cut(s) 191, 352, 533, 607, 765
DinI GGCGCC 1 cut(s) 514
DpnI GATC 8 cut(s) 258, 308, 347, 381, 440, 690, 718, 771
DpnII GATC 8 cut(s) 256, 306, 345, 379, 438, 688, 716, 769
Eam1104I CTCTTC 1 cut(s) 783
EarI CTCTTC 1 cut(s) 783
EciI GGCGGA 1 cut(s) 775
Eco130I CCWWGG 2 cut(s) 260, 804
Eco24I GRGCYC 1 cut(s) 129
Eco57I CTGAAG 2 cut(s) 504, 807
EcoRI GAATTC 1 cut(s) 619
EcoRII CCWGG 1 cut(s) 755
EcoT14I CCWWGG 2 cut(s) 260, 804
EcoT38I GRGCYC 1 cut(s) 129
EgeI GGCGCC 1 cut(s) 514
EheI GGCGCC 1 cut(s) 514
ErhI CCWWGG 2 cut(s) 260, 804
FaeI CATG 5 cut(s) 295, 306, 389, 743, 808
FaiI YATR 9 cut(s) 165, 185, 272, 293, 304, 387, 741, 749, 806
FaqI GGGAC 1 cut(s) 825
FatI CATG 5 cut(s) 291, 302, 385, 739, 804
FauI CCCGC 1 cut(s) 852
Fnu4HI GCNGC 4 cut(s) 283, 489, 732, 744
FokI GGATG 2 cut(s) 482, 515
FriOI GRGCYC 1 cut(s) 129
Fsp4HI GCNGC 4 cut(s) 283, 489, 732, 744
FspBI CTAG 3 cut(s) 122, 450, 548
FspI TGCGCA 1 cut(s) 821
GlaI GCGC 3 cut(s) 336, 514, 821
GluI GCNGC 4 cut(s) 283, 489, 732, 744
GsaI CCCAGC 1 cut(s) 653
GsuI CTGGAG 1 cut(s) 658
HaeII RGCGCY 1 cut(s) 516
HaeIII GGCC 1 cut(s) 527
HhaI GCGC 3 cut(s) 337, 515, 822
Hin1I GRCGYC 1 cut(s) 513
Hin1II CATG 5 cut(s) 295, 306, 389, 743, 808
Hin6I GCGC 3 cut(s) 335, 513, 820
HinP1I GCGC 3 cut(s) 335, 513, 820
HinfI GANTC 5 cut(s) 319, 410, 446, 584, 590
HphI GGTGA 1 cut(s) 728
Hpy166II GTNNAC 1 cut(s) 143
Hpy188I TCNGA 6 cut(s) 115, 355, 473, 589, 610, 681
Hpy188III TCNNGA 1 cut(s) 450
Hpy8I GTNNAC 1 cut(s) 143
Hpy99I CGWCG 1 cut(s) 853
HpyAV CCTTC 4 cut(s) 60, 456, 503, 510
HpyCH4V TGCA 3 cut(s) 285, 491, 743
HpyF10VI GCNNNNNNNGC 5 cut(s) 488, 740, 752, 757, 828
HpyF3I CTNAG 5 cut(s) 191, 352, 533, 607, 765
Hsp92I GRCGYC 1 cut(s) 513
Hsp92II CATG 5 cut(s) 295, 306, 389, 743, 808
HspAI GCGC 3 cut(s) 335, 513, 820
KasI GGCGCC 1 cut(s) 512
Kzo9I GATC 8 cut(s) 256, 306, 345, 379, 438, 688, 716, 769
LguI GCTCTTC 1 cut(s) 783
LmnI GCTCC 2 cut(s) 174, 544
Lsp1109I GCAGC 4 cut(s) 269, 475, 718, 755
LweI GCATC 1 cut(s) 339
MaeI CTAG 3 cut(s) 122, 450, 548
MalI GATC 8 cut(s) 258, 308, 347, 381, 440, 690, 718, 771
MboI GATC 8 cut(s) 256, 306, 345, 379, 438, 688, 716, 769
MboII GAAGA 3 cut(s) 340, 681, 800
MflI RGATCY 2 cut(s) 379, 769
MhlI GDGCHC 1 cut(s) 129
MluCI AATT 4 cut(s) 426, 552, 599, 619
Mly113I GGCGCC 1 cut(s) 513
MlyI GAGTC 1 cut(s) 455
MnlI CCTC 9 cut(s) 206, 255, 467, 517, 530, 633, 760, 783, 807
MroXI GAANNNNTTC 1 cut(s) 45
MseI TTAA 1 cut(s) 602
MspA1I CMGCKG 1 cut(s) 459
MspR9I CCNGG 1 cut(s) 757
MvaI CCWGG 1 cut(s) 757
MvnI CGCG 2 cut(s) 335, 337
MwoI GCNNNNNNNGC 5 cut(s) 488, 740, 752, 757, 828
NarI GGCGCC 1 cut(s) 513
NcoI CCATGG 1 cut(s) 804
NdeII GATC 8 cut(s) 256, 306, 345, 379, 438, 688, 716, 769
NheI GCTAGC 1 cut(s) 547
NlaIII CATG 5 cut(s) 295, 306, 389, 743, 808
NlaIV GGNNCC 4 cut(s) 176, 266, 514, 771
NmeAIII GCCGAG 3 cut(s) 203, 469, 547
NsbI TGCGCA 1 cut(s) 821
PciSI GCTCTTC 1 cut(s) 783
PdmI GAANNNNTTC 1 cut(s) 45
PfeI GAWTC 4 cut(s) 319, 410, 584, 590
PflFI GACNNNGTC 1 cut(s) 675
PkrI GCNGC 4 cut(s) 284, 490, 733, 745
PleI GAGTC 1 cut(s) 454
PluTI GGCGCC 1 cut(s) 516
PpsI GAGTC 1 cut(s) 454
PshBI ATTAAT 1 cut(s) 602
Psp6I CCWGG 1 cut(s) 755
PspFI CCCAGC 1 cut(s) 649
PspGI CCWGG 1 cut(s) 755
PspN4I GGNNCC 4 cut(s) 176, 266, 514, 771
PstI CTGCAG 1 cut(s) 493
PsuI RGATCY 2 cut(s) 379, 769
PsyI GACNNNGTC 1 cut(s) 675
RsaI GTAC 4 cut(s) 142, 232, 697, 816
RsaNI GTAC 4 cut(s) 141, 231, 696, 815
SapI GCTCTTC 1 cut(s) 783
SaqAI TTAA 1 cut(s) 602
SatI GCNGC 4 cut(s) 283, 489, 732, 744
Sau3AI GATC 8 cut(s) 256, 306, 345, 379, 438, 688, 716, 769
SchI GAGTC 1 cut(s) 455
ScrFI CCNGG 1 cut(s) 757
SduI GDGCHC 1 cut(s) 129
SfaNI GCATC 1 cut(s) 339
SfcI CTRYAG 1 cut(s) 489
SfoI GGCGCC 1 cut(s) 514
Sse9I AATT 4 cut(s) 426, 552, 599, 619
SsiI CCGC 3 cut(s) 459, 760, 845
SspDI GGCGCC 1 cut(s) 512
SspMI CTAG 3 cut(s) 122, 450, 548
StyD4I CCNGG 1 cut(s) 755
StyI CCWWGG 2 cut(s) 260, 804
TaqI TCGA 3 cut(s) 317, 691, 719
TasI AATT 4 cut(s) 426, 552, 599, 619
TatI WGTACW 3 cut(s) 140, 695, 814
TfiI GAWTC 4 cut(s) 319, 410, 584, 590
Tru1I TTAA 1 cut(s) 602
Tru9I TTAA 1 cut(s) 602
TscAI CASTG 1 cut(s) 150
TseI GCWGC 4 cut(s) 282, 488, 731, 743
TspDTI ATGAA 3 cut(s) 42, 302, 612
TspGWI ACGGA 2 cut(s) 168, 493
TspRI CASTG 1 cut(s) 150
Tth111I GACNNNGTC 1 cut(s) 675
VspI ATTAAT 1 cut(s) 602
XapI RAATTY 2 cut(s) 426, 619
XbaI TCTAGA 1 cut(s) 449
XmnI GAANNNNTTC 1 cut(s) 45
XspI CTAG 3 cut(s) 122, 450, 548
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.