ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 220 |
| Acc36I | ACCTGC | 1 cut(s) | 220 |
| AccB1I | GGYRCC | 1 cut(s) | 83 |
| AciI | CCGC | 1 cut(s) | 529 |
| AclWI | GGATC | 1 cut(s) | 546 |
| AcuI | CTGAAG | 1 cut(s) | 97 |
| AfaI | GTAC | 1 cut(s) | 585 |
| AgsI | TTSAA | 1 cut(s) | 226 |
| AluBI | AGCT | 5 cut(s) | 33, 59, 338, 446, 515 |
| AluI | AGCT | 5 cut(s) | 33, 59, 338, 446, 515 |
| Alw26I | GTCTC | 1 cut(s) | 199 |
| AlwI | GGATC | 1 cut(s) | 546 |
| AoxI | GGCC | 1 cut(s) | 598 |
| ApeKI | GCWGC | 4 cut(s) | 146, 149, 242, 446 |
| AspS9I | GGNCC | 1 cut(s) | 408 |
| AsuHPI | GGTGA | 2 cut(s) | 168, 274 |
| AvaII | GGWCC | 1 cut(s) | 408 |
| BaeGI | GKGCMC | 1 cut(s) | 88 |
| BanI | GGYRCC | 1 cut(s) | 83 |
| BbsI | GAAGAC | 1 cut(s) | 103 |
| BbvI | GCAGC | 4 cut(s) | 133, 136, 229, 433 |
| BccI | CCATC | 6 cut(s) | 78, 419, 526, 543, 574, 590 |
| BclI | TGATCA | 1 cut(s) | 282 |
| BcoDI | GTCTC | 1 cut(s) | 199 |
| BfaI | CTAG | 1 cut(s) | 483 |
| BfuAI | ACCTGC | 1 cut(s) | 220 |
| BisI | GCNGC | 4 cut(s) | 147, 150, 243, 447 |
| BlsI | GCNGC | 4 cut(s) | 148, 151, 244, 448 |
| Bme18I | GGWCC | 1 cut(s) | 408 |
| BmgT120I | GGNCC | 1 cut(s) | 408 |
| BmiI | GGNNCC | 1 cut(s) | 85 |
| BmsI | GCATC | 4 cut(s) | 6, 140, 229, 563 |
| BpiI | GAAGAC | 1 cut(s) | 103 |
| BsaBI | GATNNNNATC | 2 cut(s) | 284, 553 |
| BsaI | GGTCTC | 1 cut(s) | 199 |
| BsaJI | CCNNGG | 1 cut(s) | 79 |
| Bse118I | RCCGGY | 1 cut(s) | 449 |
| Bse8I | GATNNNNATC | 2 cut(s) | 284, 553 |
| BseDI | CCNNGG | 1 cut(s) | 79 |
| BseGI | GGATG | 4 cut(s) | 285, 411, 537, 569 |
| BseJI | GATNNNNATC | 2 cut(s) | 284, 553 |
| BseMII | CTCAG | 1 cut(s) | 473 |
| BseSI | GKGCMC | 1 cut(s) | 88 |
| BseXI | GCAGC | 4 cut(s) | 133, 136, 229, 433 |
| BsgI | GTGCAG | 1 cut(s) | 135 |
| BshFI | GGCC | 1 cut(s) | 600 |
| BshNI | GGYRCC | 1 cut(s) | 83 |
| BsiSI | CCGG | 1 cut(s) | 450 |
| BslFI | GGGAC | 1 cut(s) | 305 |
| BsmAI | GTCTC | 1 cut(s) | 199 |
| BsmFI | GGGAC | 1 cut(s) | 305 |
| BsnI | GGCC | 1 cut(s) | 600 |
| Bso31I | GGTCTC | 1 cut(s) | 199 |
| Bsp1286I | GDGCHC | 1 cut(s) | 88 |
| Bsp143I | GATC | 3 cut(s) | 282, 538, 576 |
| BspACI | CCGC | 1 cut(s) | 529 |
| BspANI | GGCC | 1 cut(s) | 600 |
| BspCNI | CTCAG | 1 cut(s) | 472 |
| BspHI | TCATGA | 1 cut(s) | 361 |
| BspLI | GGNNCC | 1 cut(s) | 85 |
| BspMI | ACCTGC | 1 cut(s) | 220 |
| BspPI | GGATC | 1 cut(s) | 546 |
| BspT107I | GGYRCC | 1 cut(s) | 83 |
| BspTNI | GGTCTC | 1 cut(s) | 199 |
| BsrFI | RCCGGY | 1 cut(s) | 449 |
| BssAI | RCCGGY | 1 cut(s) | 449 |
| BssECI | CCNNGG | 1 cut(s) | 79 |
| BssMI | GATC | 3 cut(s) | 282, 538, 576 |
| BssT1I | CCWWGG | 1 cut(s) | 79 |
| Bst4CI | ACNGT | 3 cut(s) | 334, 359, 509 |
| Bst6I | CTCTTC | 3 cut(s) | 2, 197, 381 |
| BstDEI | CTNAG | 1 cut(s) | 459 |
| BstF5I | GGATG | 4 cut(s) | 285, 411, 537, 569 |
| BstKTI | GATC | 3 cut(s) | 285, 541, 579 |
| BstMAI | GTCTC | 1 cut(s) | 199 |
| BstMBI | GATC | 3 cut(s) | 282, 538, 576 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 521 |
| BstSLI | GKGCMC | 1 cut(s) | 88 |
| BstV1I | GCAGC | 4 cut(s) | 133, 136, 229, 433 |
| BstV2I | GAAGAC | 1 cut(s) | 103 |
| BstX2I | RGATCY | 1 cut(s) | 538 |
| BstYI | RGATCY | 1 cut(s) | 538 |
| BsuRI | GGCC | 1 cut(s) | 600 |
| BtsCI | GGATG | 4 cut(s) | 285, 411, 537, 569 |
| BtsIMutI | CAGTG | 2 cut(s) | 505, 564 |
| BveI | ACCTGC | 1 cut(s) | 220 |
| CciI | TCATGA | 1 cut(s) | 361 |
| Cfr10I | RCCGGY | 1 cut(s) | 449 |
| Cfr13I | GGNCC | 1 cut(s) | 408 |
| Csp6I | GTAC | 1 cut(s) | 584 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 109, 144 |
| CviAII | CATG | 2 cut(s) | 142, 362 |
| CviQI | GTAC | 1 cut(s) | 584 |
| DdeI | CTNAG | 1 cut(s) | 459 |
| DpnI | GATC | 3 cut(s) | 284, 540, 578 |
| DpnII | GATC | 3 cut(s) | 282, 538, 576 |
| Eam1104I | CTCTTC | 3 cut(s) | 2, 197, 381 |
| EarI | CTCTTC | 3 cut(s) | 2, 197, 381 |
| Eco130I | CCWWGG | 1 cut(s) | 79 |
| Eco31I | GGTCTC | 1 cut(s) | 199 |
| Eco47I | GGWCC | 1 cut(s) | 408 |
| Eco57I | CTGAAG | 1 cut(s) | 97 |
| EcoT14I | CCWWGG | 1 cut(s) | 79 |
| EcoT22I | ATGCAT | 1 cut(s) | 21 |
| ErhI | CCWWGG | 1 cut(s) | 79 |
| FaeI | CATG | 2 cut(s) | 145, 365 |
| FaiI | YATR | 4 cut(s) | 21, 143, 363, 477 |
| FaqI | GGGAC | 1 cut(s) | 305 |
| FatI | CATG | 2 cut(s) | 141, 361 |
| FbaI | TGATCA | 1 cut(s) | 282 |
| Fnu4HI | GCNGC | 4 cut(s) | 147, 150, 243, 447 |
| FokI | GGATG | 4 cut(s) | 292, 398, 544, 556 |
| Fsp4HI | GCNGC | 4 cut(s) | 147, 150, 243, 447 |
| FspBI | CTAG | 1 cut(s) | 483 |
| GluI | GCNGC | 4 cut(s) | 147, 150, 243, 447 |
| HaeIII | GGCC | 1 cut(s) | 600 |
| HapII | CCGG | 1 cut(s) | 450 |
| Hin1II | CATG | 2 cut(s) | 145, 365 |
| HincII | GTYRAC | 1 cut(s) | 493 |
| HindII | GTYRAC | 1 cut(s) | 493 |
| HinfI | GANTC | 1 cut(s) | 293 |
| HpaI | GTTAAC | 1 cut(s) | 493 |
| HpaII | CCGG | 1 cut(s) | 450 |
| HphI | GGTGA | 2 cut(s) | 168, 274 |
| Hpy166II | GTNNAC | 3 cut(s) | 317, 493, 584 |
| Hpy188I | TCNGA | 3 cut(s) | 116, 136, 462 |
| Hpy188III | TCNNGA | 2 cut(s) | 362, 542 |
| Hpy8I | GTNNAC | 3 cut(s) | 317, 493, 584 |
| HpyAV | CCTTC | 1 cut(s) | 611 |
| HpyCH4III | ACNGT | 3 cut(s) | 334, 359, 509 |
| HpyCH4V | TGCA | 3 cut(s) | 19, 131, 152 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 521 |
| HpyF3I | CTNAG | 1 cut(s) | 459 |
| Hsp92II | CATG | 2 cut(s) | 145, 365 |
| Ksp22I | TGATCA | 1 cut(s) | 282 |
| KspAI | GTTAAC | 1 cut(s) | 493 |
| Kzo9I | GATC | 3 cut(s) | 282, 538, 576 |
| LpnPI | CCDG | 8 cut(s) | 111, 192, 225, 255, 274, 285, 463, 527 |
| Lsp1109I | GCAGC | 4 cut(s) | 133, 136, 229, 433 |
| LweI | GCATC | 4 cut(s) | 6, 140, 229, 563 |
| MaeI | CTAG | 1 cut(s) | 483 |
| MaeIII | GTNAC | 1 cut(s) | 353 |
| MalI | GATC | 3 cut(s) | 284, 540, 578 |
| MboI | GATC | 3 cut(s) | 282, 538, 576 |
| MboII | GAAGA | 4 cut(s) | 19, 103, 214, 368 |
| MflI | RGATCY | 1 cut(s) | 538 |
| MhlI | GDGCHC | 1 cut(s) | 88 |
| MluCI | AATT | 3 cut(s) | 340, 396, 432 |
| MlyI | GAGTC | 1 cut(s) | 287 |
| MnlI | CCTC | 2 cut(s) | 3, 425 |
| Mph1103I | ATGCAT | 1 cut(s) | 21 |
| MseI | TTAA | 1 cut(s) | 492 |
| MspI | CCGG | 1 cut(s) | 450 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 521 |
| NdeII | GATC | 3 cut(s) | 282, 538, 576 |
| NlaIII | CATG | 2 cut(s) | 145, 365 |
| NlaIV | GGNNCC | 1 cut(s) | 85 |
| NmuCI | GTSAC | 1 cut(s) | 353 |
| NsiI | ATGCAT | 1 cut(s) | 21 |
| PagI | TCATGA | 1 cut(s) | 361 |
| PaqCI | CACCTGC | 1 cut(s) | 220 |
| PkrI | GCNGC | 4 cut(s) | 148, 151, 244, 448 |
| PleI | GAGTC | 1 cut(s) | 287 |
| PpsI | GAGTC | 1 cut(s) | 287 |
| PspN4I | GGNNCC | 1 cut(s) | 85 |
| PspPI | GGNCC | 1 cut(s) | 408 |
| PsuI | RGATCY | 1 cut(s) | 538 |
| RsaI | GTAC | 1 cut(s) | 585 |
| RsaNI | GTAC | 1 cut(s) | 584 |
| SaqAI | TTAA | 1 cut(s) | 492 |
| SatI | GCNGC | 4 cut(s) | 147, 150, 243, 447 |
| Sau3AI | GATC | 3 cut(s) | 282, 538, 576 |
| Sau96I | GGNCC | 1 cut(s) | 408 |
| SchI | GAGTC | 1 cut(s) | 287 |
| SduI | GDGCHC | 1 cut(s) | 88 |
| SetI | ASST | 8 cut(s) | 35, 61, 85, 214, 340, 448, 470, 517 |
| SfaNI | GCATC | 4 cut(s) | 6, 140, 229, 563 |
| SinI | GGWCC | 1 cut(s) | 408 |
| Sse9I | AATT | 3 cut(s) | 340, 396, 432 |
| SsiI | CCGC | 1 cut(s) | 529 |
| SspI | AATATT | 1 cut(s) | 235 |
| SspMI | CTAG | 1 cut(s) | 483 |
| StyI | CCWWGG | 1 cut(s) | 79 |
| TaaI | ACNGT | 3 cut(s) | 334, 359, 509 |
| TaqI | TCGA | 1 cut(s) | 251 |
| TasI | AATT | 3 cut(s) | 340, 396, 432 |
| TatI | WGTACW | 1 cut(s) | 583 |
| Tru1I | TTAA | 1 cut(s) | 492 |
| Tru9I | TTAA | 1 cut(s) | 492 |
| TscAI | CASTG | 2 cut(s) | 512, 564 |
| TseFI | GTSAC | 1 cut(s) | 353 |
| TseI | GCWGC | 4 cut(s) | 146, 149, 242, 446 |
| Tsp45I | GTSAC | 1 cut(s) | 353 |
| TspDTI | ATGAA | 2 cut(s) | 130, 378 |
| TspRI | CASTG | 2 cut(s) | 512, 564 |
| VpaK11BI | GGWCC | 1 cut(s) | 408 |
| XspI | CTAG | 1 cut(s) | 483 |
| Zsp2I | ATGCAT | 1 cut(s) | 21 |