Prupe.5G044600_v2.0.a1

Reverse transcriptase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0000093
Physical Location & Seq
Forward (+)
4883041 .. 4883552
512 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G044600.1

Sequence Viewer

Length: 474 bp
ATGGACAGTCGTGCCTCTTGGTGCCCTCCAAGACTGGGATTTATCAAGGTCAATATCGATGGAGCGTGGGCCGACGCTGCTAGTTCGGCAGGTTTTGGGGTGATCTTGCGTGACTCAACTGGTGCTTTTTGTGGTGGAACAGCGGGTCCTAACTCTTGTGAGTCGGCCCTTATGTCTGAAGCCGAAGCGGCTCTTTCTGGTTTGAAGCTGGCTGCACAGTTTGGGCATCACAGAATATCTTGGCATCTGATTCCAAAAGCTTGGACTATCTTGCCTATTATCAAGGACATAAGGAAGTTGGCGGCATCTTTTGTTTCTAGTGAGTGGTGCTGGGCGCCTAGAAGCCAAAATATGGCTGCACATGAAGCTGCAAAGCTTGGTAGAGGTCTGGTGGAAGCGCGATGCTGGCTCAATAGAGCTCCACTTGCTCTCATGCACGTTCTCAATTCGGATGGTCTACCTGGTCCACCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3

Protein Analysis

158

Amino Acids

16.73

Weight (kDa)

8.72

Isoelectric Point (pI)

41.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000093)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G09490
fragaria_vesca FvH4_1g23791 FvH4_2g01641 FvH4_2g04612 FvH4_2g06831 FvH4_2g07841 FvH4_2g13581 FvH4_2g27220 FvH4_2g30621 FvH4_2g34753 FvH4_3g10392 FvH4_3g24291 FvH4_3g25030 FvH4_3g29361 FvH4_3g31372 FvH4_3g32402 FvH4_3g43651 FvH4_4g03830 FvH4_4g05481 FvH4_4g20431 FvH4_4g21421 FvH4_4g25931 FvH4_5g08801 FvH4_5g21021 FvH4_5g26254 FvH4_5g30931 FvH4_5g31281 FvH4_5g33581 FvH4_5g35622 FvH4_6g02100 FvH4_6g07963 FvH4_6g11620 FvH4_6g16031 FvH4_6g19041 FvH4_6g24211 FvH4_6g24271 FvH4_6g30670 FvH4_6g49540 FvH4_7g25914
malus_domestica MD03G1245200.v1.1 MD04G1168000.v1.1 MD09G1242600.v1.1 MD15G1334000.v1.1 MD17G1165700.v1.1
prunus_persica Prupe.1G073500_v2.0.a1 Prupe.1G283700_v2.0.a1 Prupe.1G524100_v2.0.a1 Prupe.2G022700_v2.0.a1 Prupe.2G022800_v2.0.a1 Prupe.2G022800_v2.0.a1 Prupe.2G044300_v2.0.a1 Prupe.2G048800_v2.0.a1 Prupe.2G092000_v2.0.a1 Prupe.2G216500_v2.0.a1 Prupe.2G216600_v2.0.a1 Prupe.2G216600_v2.0.a1 Prupe.3G103400_v2.0.a1 Prupe.3G143300_v2.0.a1 Prupe.3G190000_v2.0.a1 Prupe.3G219800_v2.0.a1 Prupe.4G177800_v2.0.a1 Prupe.4G261300_v2.0.a1 Prupe.5G044600_v2.0.a1 Prupe.5G067400_v2.0.a1 Prupe.7G083900_v2.0.a1 Prupe.7G120900_v2.0.a1 Prupe.8G032200_v2.0.a1 Prupe.8G036100_v2.0.a1 Prupe.8G042700_v2.0.a1
pyrus_communis pycom01g21710 pycom02g19770 pycom03g05120 pycom05g01370 pycom05g08780 pycom05g10120 pycom07g01370 pycom07g05930 pycom08g15760 pycom08g18090 pycom08g21060 pycom09g03880 pycom10g03870 pycom13g22240 pycom16g05120 pycom16g17170 pycom17g12180 pycom17g16290 pycom17g21230 pycom17g24990 pycom215g00100
rosa_chinensis RchiOBHm_Chr1g0323031 RchiOBHm_Chr1g0324391 RchiOBHm_Chr1g0326401 RchiOBHm_Chr1g0327811 RchiOBHm_Chr1g0332521 RchiOBHm_Chr1g0336501 RchiOBHm_Chr1g0346021 RchiOBHm_Chr1g0347191 RchiOBHm_Chr1g0367181 RchiOBHm_Chr2g0089441 RchiOBHm_Chr2g0115441 RchiOBHm_Chr3g0490691 RchiOBHm_Chr4g0395251 RchiOBHm_Chr4g0398081 RchiOBHm_Chr4g0409451 RchiOBHm_Chr4g0413041 RchiOBHm_Chr4g0415471 RchiOBHm_Chr4g0420961 RchiOBHm_Chr5g0040301 RchiOBHm_Chr5g0070651 RchiOBHm_Chr6g0263011 RchiOBHm_Chr6g0270721 RchiOBHm_Chr6g0277111 RchiOBHm_Chr7g0179771 RchiOBHm_Chr7g0223051 RchiOBHm_Chr7g0225031 RchiOBHm_Chr7g0225091
rosa_laevigata RLG00000001668 RLG00000001672 RLG00000001676 RLG00000007762 RLG00000008994 RLG00000011117 RLG00000013729 RLG00000013839 RLG00000014759 RLG00000016638 RLG00000018535 RLG00000018614 RLG00000018646 RLG00000020679 RLG00000023337 RLG00000029348 RLG00000035891 RLG00000035912
rosa_multiflora Rmu_co8152500.1_g000001 Rmu_co8203314.1_g000001 Rmu_co8383183.1_g000001 Rmu_sc0000293.1_g000033 Rmu_sc0000367.1_g000226 Rmu_sc0000512.1_g000023 Rmu_sc0000594.1_g000059 Rmu_sc0000654.1_g000022 Rmu_sc0000654.1_g000047 Rmu_sc0000706.1_g000037 Rmu_sc0001348.1_g000008 Rmu_sc0001385.1_g000024 Rmu_sc0001405.1_g000002 Rmu_sc0001521.1_g000048 Rmu_sc0001932.1_g000008 Rmu_sc0001932.1_g000009 Rmu_sc0002535.1_g000011 Rmu_sc0002908.1_g000019 Rmu_sc0003709.1_g000004 Rmu_sc0003882.1_g000054 Rmu_sc0004035.1_g000007 Rmu_sc0004041.1_g000007 Rmu_sc0004288.1_g000011 Rmu_sc0004569.1_g000004 Rmu_sc0004677.1_g000016 Rmu_sc0004834.1_g000010 Rmu_sc0005193.1_g000008 Rmu_sc0005354.1_g000009 Rmu_sc0006514.1_g000021 Rmu_sc0006691.1_g000001 Rmu_sc0006888.1_g000021 Rmu_sc0006889.1_g000013 Rmu_sc0008096.1_g000017 Rmu_sc0008378.1_g000003 Rmu_sc0009127.1_g000005 Rmu_sc0009191.1_g000016 Rmu_sc0009687.1_g000018 Rmu_sc0009709.1_g000005 Rmu_sc0009880.1_g000015 Rmu_sc0011710.1_g000001 Rmu_sc0012615.1_g000004 Rmu_sc0016091.1_g000002 Rmu_sc0022339.1_g000006 Rmu_sc0026537.1_g000002 Rmu_sc0027689.1_g000002 Rmu_sc0036222.1_g000001 Rmu_sc0040890.1_g000001 Rmu_ssc0000148.1_g000006 Rmu_ssc0000151.1_g000017 Rmu_ssc0000404.1_g000018 Rmu_ssc0000449.1_g000009
rosa_roxburghii Rroxscaffold_1G00017760 Rroxscaffold_1G00059150 Rroxscaffold_2G00142560 Rroxscaffold_3G00220440 Rroxscaffold_3G00231700 Rroxscaffold_3G00232400 Rroxscaffold_3G00274510 Rroxscaffold_4G00288790 Rroxscaffold_4G00305680 Rroxscaffold_4G00314880 Rroxscaffold_4G00314900 Rroxscaffold_5G00334590 Rroxscaffold_6G00394110 Rroxscaffold_6G00415860 Rroxscaffold_7G00168240 Rroxscaffold_7G00204400 Rroxscaffold_7G00207840
rosa_rugosa Rorug01G0034900 Rorug02G0079500 Rorug02G0229000 Rorug02G0229100 Rorug02G0291400 Rorug02G0298800 Rorug03G0046400 Rorug03G0064700 Rorug03G0077300 Rorug03G0199000 Rorug03G0200400 Rorug04G0205200 Rorug05G0025400 Rorug05G0127400 Rorug05G0192100 Rorug05G0453400 Rorug05G0538300 Rorug06G0035200 Rorug06G0241000 Rorug06G0268300 Rorug07G0120300 Rorug07G0145000 Rorug07G0209100 Rorug07G0240500 Rorug07G0271700
rosa_samantha Rh1AG179100 Rh1BG106900 Rh1BG163400 Rh1BG163500 Rh1BG323500 Rh2CG447900 Rh2DG503700 Rh3AG293600 Rh3CG229100 Rh3DG221500 Rh4AG106000 Rh4BG267700 Rh4CG062500 Rh4CG090100 Rh4CG114800 Rh5AG038400 Rh5BG395400 Rh5CG441700 Rh5CG572000 Rh6AG222400 Rh6AG264500 Rh6BG137400 Rh6BG225700 Rh6CG144300 Rh6DG087600 Rh6DG096000 Rh6DG362400 Rh6DG390200 Rh7AG207500 Rh7AG324700 Rh7AG388800 Rh7AG437100 Rh7BG019000 Rh7BG374600 Rh7CG028700 Rh7CG341500 Rh7CG408000 Rh7CG408300 Rh7DG354600
rosa_wichuraiana Rw0G009630 Rw0G012170 Rw4G022700 Rw5G028420 Rw5G029490 Rw6G007220 Rw6G007410 Rw6G017880 Rw7G012440 Rw7G021830 Rw7G027490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 80
AccB1I GGYRCC 2 cut(s) 21, 334
AccB7I CCANNNNNTGG 1 cut(s) 352
AccI GTMKAC 1 cut(s) 457
AccII CGCG 1 cut(s) 400
AciI CCGC 3 cut(s) 143, 188, 302
AcuI CTGAAG 1 cut(s) 198
AcyI GRCGYC 1 cut(s) 335
AfiI CCNNNNNNNGG 2 cut(s) 35, 352
AgsI TTSAA 1 cut(s) 205
AjnI CCWGG 1 cut(s) 460
AloI GAACNNNNNNTCC 2 cut(s) 130, 162
AluBI AGCT 5 cut(s) 208, 260, 368, 376, 419
AluI AGCT 5 cut(s) 208, 260, 368, 376, 419
Alw21I GWGCWC 1 cut(s) 421
AoxI GGCC 2 cut(s) 69, 165
ApeKI GCWGC 4 cut(s) 77, 212, 356, 368
AspLEI GCGC 2 cut(s) 337, 400
AspS9I GGNCC 4 cut(s) 69, 146, 166, 464
AsuHPI GGTGA 1 cut(s) 112
AvaII GGWCC 2 cut(s) 146, 464
BaeGI GKGCMC 1 cut(s) 26
BanI GGYRCC 2 cut(s) 21, 334
BanII GRGCYC 1 cut(s) 421
Bbv12I GWGCWC 1 cut(s) 421
BbvI GCAGC 4 cut(s) 64, 199, 343, 355
BccI CCATC 2 cut(s) 53, 446
BciT130I CCWGG 1 cut(s) 462
BfaI CTAG 3 cut(s) 81, 318, 339
BfoI RGCGCY 1 cut(s) 338
BfuAI ACCTGC 1 cut(s) 80
BglI GCCNNNNNGGC 1 cut(s) 188
BisI GCNGC 6 cut(s) 78, 189, 213, 303, 357, 369
BlsI GCNGC 6 cut(s) 79, 190, 214, 304, 358, 370
Bme1390I CCNGG 1 cut(s) 462
Bme18I GGWCC 2 cut(s) 146, 464
BmgT120I GGNCC 4 cut(s) 69, 146, 166, 464
BmiI GGNNCC 3 cut(s) 23, 147, 336
BmrFI CCNGG 1 cut(s) 462
BmrI ACTGGG 1 cut(s) 44
BmsI GCATC 4 cut(s) 235, 253, 314, 392
BmuI ACTGGG 1 cut(s) 44
Bsa29I ATCGAT 1 cut(s) 57
BsaHI GRCGYC 1 cut(s) 335
Bsc4I CCNNNNNNNGG 2 cut(s) 35, 352
Bse1I ACTGG 2 cut(s) 39, 124
BseBI CCWGG 1 cut(s) 462
BseCI ATCGAT 1 cut(s) 57
BseGI GGATG 1 cut(s) 457
BseLI CCNNNNNNNGG 2 cut(s) 35, 352
BseNI ACTGG 2 cut(s) 39, 124
BseSI GKGCMC 1 cut(s) 26
BseXI GCAGC 4 cut(s) 64, 199, 343, 355
BseYI CCCAGC 1 cut(s) 330
BsgI GTGCAG 2 cut(s) 198, 342
Bsh1236I CGCG 1 cut(s) 400
BshFI GGCC 2 cut(s) 71, 167
BshNI GGYRCC 2 cut(s) 21, 334
BshVI ATCGAT 1 cut(s) 57
BsiHKAI GWGCWC 1 cut(s) 421
BslI CCNNNNNNNGG 2 cut(s) 35, 352
BsnI GGCC 2 cut(s) 71, 167
Bsp1286I GDGCHC 2 cut(s) 26, 421
Bsp143I GATC 1 cut(s) 102
BspACI CCGC 3 cut(s) 143, 188, 302
BspANI GGCC 2 cut(s) 71, 167
BspDI ATCGAT 1 cut(s) 57
BspFNI CGCG 1 cut(s) 400
BspLI GGNNCC 3 cut(s) 23, 147, 336
BspMI ACCTGC 1 cut(s) 80
BspT107I GGYRCC 2 cut(s) 21, 334
BsrI ACTGG 2 cut(s) 39, 124
BssMI GATC 1 cut(s) 102
BssNI GRCGYC 1 cut(s) 335
Bst2UI CCWGG 1 cut(s) 462
Bst4CI ACNGT 2 cut(s) 8, 219
BstACI GRCGYC 1 cut(s) 335
BstC8I GCNNGC 2 cut(s) 210, 407
BstDEI CTNAG 1 cut(s) 471
BstF5I GGATG 1 cut(s) 457
BstFNI CGCG 1 cut(s) 400
BstH2I RGCGCY 1 cut(s) 338
BstHHI GCGC 2 cut(s) 337, 400
BstKTI GATC 1 cut(s) 105
BstMBI GATC 1 cut(s) 102
BstMWI GCNNNNNNNGC 6 cut(s) 77, 86, 188, 365, 406, 425
BstNI CCWGG 1 cut(s) 462
BstSCI CCNGG 1 cut(s) 460
BstSLI GKGCMC 1 cut(s) 26
BstUI CGCG 1 cut(s) 400
BstV1I GCAGC 4 cut(s) 64, 199, 343, 355
BstXI CCANNNNNNTGG 1 cut(s) 261
Bsu15I ATCGAT 1 cut(s) 57
BsuRI GGCC 2 cut(s) 71, 167
BsuTUI ATCGAT 1 cut(s) 57
BtgZI GCGATG 1 cut(s) 415
BtsCI GGATG 1 cut(s) 457
BveI ACCTGC 1 cut(s) 80
Cac8I GCNNGC 2 cut(s) 210, 407
CfoI GCGC 2 cut(s) 337, 400
Cfr13I GGNCC 4 cut(s) 69, 146, 166, 464
ClaI ATCGAT 1 cut(s) 57
CseI GACGC 1 cut(s) 83
CsiI ACCWGGT 1 cut(s) 460
CviAII CATG 2 cut(s) 362, 433
DdeI CTNAG 1 cut(s) 471
DinI GGCGCC 1 cut(s) 336
DpnI GATC 1 cut(s) 104
DpnII GATC 1 cut(s) 102
Ecl136II GAGCTC 1 cut(s) 419
Eco24I GRGCYC 1 cut(s) 421
Eco47I GGWCC 2 cut(s) 146, 464
Eco53kI GAGCTC 1 cut(s) 419
Eco57I CTGAAG 1 cut(s) 198
EcoICRI GAGCTC 1 cut(s) 419
EcoO109I RGGNCCY 1 cut(s) 146
EcoRII CCWGG 1 cut(s) 460
EcoT38I GRGCYC 1 cut(s) 421
EgeI GGCGCC 1 cut(s) 336
EheI GGCGCC 1 cut(s) 336
FaeI CATG 2 cut(s) 365, 436
FaiI YATR 5 cut(s) 173, 290, 353, 363, 434
FalI AAGNNNNNCTT 2 cut(s) 177, 209
FatI CATG 2 cut(s) 361, 432
FauI CCCGC 1 cut(s) 136
FblI GTMKAC 1 cut(s) 457
Fnu4HI GCNGC 6 cut(s) 78, 189, 213, 303, 357, 369
FokI GGATG 1 cut(s) 464
FriOI GRGCYC 1 cut(s) 421
Fsp4HI GCNGC 6 cut(s) 78, 189, 213, 303, 357, 369
FspBI CTAG 3 cut(s) 81, 318, 339
GlaI GCGC 2 cut(s) 336, 399
GluI GCNGC 6 cut(s) 78, 189, 213, 303, 357, 369
GsaI CCCAGC 1 cut(s) 334
HaeII RGCGCY 1 cut(s) 338
HaeIII GGCC 2 cut(s) 71, 167
HgaI GACGC 1 cut(s) 83
HhaI GCGC 2 cut(s) 337, 400
Hin1I GRCGYC 1 cut(s) 335
Hin1II CATG 2 cut(s) 365, 436
Hin6I GCGC 2 cut(s) 335, 398
HinP1I GCGC 2 cut(s) 335, 398
HindIII AAGCTT 2 cut(s) 258, 374
HinfI GANTC 3 cut(s) 113, 161, 250
HphI GGTGA 1 cut(s) 112
Hpy166II GTNNAC 2 cut(s) 458, 467
Hpy188I TCNGA 3 cut(s) 178, 249, 451
Hpy8I GTNNAC 2 cut(s) 458, 467
Hpy99I CGWCG 1 cut(s) 77
HpyCH4III ACNGT 2 cut(s) 8, 219
HpyCH4IV ACGT 1 cut(s) 438
HpyCH4V TGCA 4 cut(s) 215, 359, 371, 436
HpyF10VI GCNNNNNNNGC 6 cut(s) 77, 86, 188, 365, 406, 425
HpyF3I CTNAG 1 cut(s) 471
HpySE526I ACGT 1 cut(s) 438
Hsp92I GRCGYC 1 cut(s) 335
Hsp92II CATG 2 cut(s) 365, 436
HspAI GCGC 2 cut(s) 335, 398
KasI GGCGCC 1 cut(s) 334
Kzo9I GATC 1 cut(s) 102
LmnI GCTCC 2 cut(s) 62, 424
LpnPI CCDG 9 cut(s) 20, 75, 105, 183, 194, 316, 374, 391, 447
Lsp1109I GCAGC 4 cut(s) 64, 199, 343, 355
LweI GCATC 4 cut(s) 235, 253, 314, 392
MabI ACCWGGT 1 cut(s) 460
MaeI CTAG 3 cut(s) 81, 318, 339
MaeII ACGT 1 cut(s) 438
MaeIII GTNAC 1 cut(s) 110
MalI GATC 1 cut(s) 104
MboI GATC 1 cut(s) 102
MhlI GDGCHC 2 cut(s) 26, 421
MluCI AATT 1 cut(s) 445
Mly113I GGCGCC 1 cut(s) 335
MlyI GAGTC 2 cut(s) 107, 170
MnlI CCTC 3 cut(s) 25, 36, 377
MspA1I CMGCKG 1 cut(s) 143
MspR9I CCNGG 1 cut(s) 462
MvaI CCWGG 1 cut(s) 462
MvnI CGCG 1 cut(s) 400
MwoI GCNNNNNNNGC 6 cut(s) 77, 86, 188, 365, 406, 425
NarI GGCGCC 1 cut(s) 335
NdeII GATC 1 cut(s) 102
NlaIII CATG 2 cut(s) 365, 436
NlaIV GGNNCC 3 cut(s) 23, 147, 336
NmuCI GTSAC 1 cut(s) 110
PfeI GAWTC 1 cut(s) 250
PflMI CCANNNNNTGG 1 cut(s) 352
PkrI GCNGC 6 cut(s) 79, 190, 214, 304, 358, 370
PleI GAGTC 2 cut(s) 107, 169
PluTI GGCGCC 1 cut(s) 338
PpsI GAGTC 2 cut(s) 107, 169
PpuMI RGGWCCY 1 cut(s) 146
Psp124BI GAGCTC 1 cut(s) 421
Psp5II RGGWCCY 1 cut(s) 146
Psp6I CCWGG 1 cut(s) 460
PspFI CCCAGC 1 cut(s) 330
PspGI CCWGG 1 cut(s) 460
PspN4I GGNNCC 3 cut(s) 23, 147, 336
PspPI GGNCC 4 cut(s) 69, 146, 166, 464
PspPPI RGGWCCY 1 cut(s) 146
SacI GAGCTC 1 cut(s) 421
SatI GCNGC 6 cut(s) 78, 189, 213, 303, 357, 369
Sau3AI GATC 1 cut(s) 102
Sau96I GGNCC 4 cut(s) 69, 146, 166, 464
SchI GAGTC 2 cut(s) 107, 170
ScrFI CCNGG 1 cut(s) 462
SduI GDGCHC 2 cut(s) 26, 421
SexAI ACCWGGT 1 cut(s) 460
SfaNI GCATC 4 cut(s) 235, 253, 314, 392
SfoI GGCGCC 1 cut(s) 336
SinI GGWCC 2 cut(s) 146, 464
Sse9I AATT 1 cut(s) 445
SsiI CCGC 3 cut(s) 143, 188, 302
SspDI GGCGCC 1 cut(s) 334
SspMI CTAG 3 cut(s) 81, 318, 339
SstI GAGCTC 1 cut(s) 421
StyD4I CCNGG 1 cut(s) 460
TaaI ACNGT 2 cut(s) 8, 219
TaiI ACGT 1 cut(s) 441
TaqI TCGA 1 cut(s) 57
TasI AATT 1 cut(s) 445
TauI GCSGC 2 cut(s) 191, 305
TfiI GAWTC 1 cut(s) 250
TseFI GTSAC 1 cut(s) 110
TseI GCWGC 4 cut(s) 77, 212, 356, 368
Tsp45I GTSAC 1 cut(s) 110
TspDTI ATGAA 1 cut(s) 378
Van91I CCANNNNNTGG 1 cut(s) 352
VpaK11BI GGWCC 2 cut(s) 146, 464
XmiI GTMKAC 1 cut(s) 457
XspI CTAG 3 cut(s) 81, 318, 339
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.