Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 84 - 156 | 3e-07 | Reverse transcriptase-like |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 216 |
| AciI | CCGC | 2 cut(s) | 187, 260 |
| AcsI | RAATTY | 3 cut(s) | 103, 146, 349 |
| AcuI | CTGAAG | 1 cut(s) | 396 |
| AfaI | GTAC | 2 cut(s) | 15, 26 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 216 |
| AflIII | ACRYGT | 1 cut(s) | 34 |
| AgsI | TTSAA | 2 cut(s) | 88, 349 |
| AluBI | AGCT | 4 cut(s) | 137, 299, 380, 470 |
| AluI | AGCT | 4 cut(s) | 137, 299, 380, 470 |
| AoxI | GGCC | 2 cut(s) | 6, 397 |
| ApeKI | GCWGC | 1 cut(s) | 371 |
| ApoI | RAATTY | 3 cut(s) | 103, 146, 349 |
| AsuHPI | GGTGA | 1 cut(s) | 176 |
| BanII | GRGCYC | 1 cut(s) | 294 |
| BauI | CACGAG | 1 cut(s) | 238 |
| BbvCI | CCTCAGC | 1 cut(s) | 401 |
| BbvI | GCAGC | 1 cut(s) | 358 |
| BisI | GCNGC | 2 cut(s) | 261, 372 |
| BlsI | GCNGC | 2 cut(s) | 262, 373 |
| BmrI | ACTGGG | 1 cut(s) | 337 |
| BmsI | GCATC | 1 cut(s) | 247 |
| BmuI | ACTGGG | 1 cut(s) | 337 |
| Bpu10I | CCTNAGC | 1 cut(s) | 401 |
| BsaAI | YACGTR | 1 cut(s) | 308 |
| BsaJI | CCNNGG | 1 cut(s) | 366 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 216 |
| Bse1I | ACTGG | 2 cut(s) | 322, 343 |
| BseDI | CCNNGG | 1 cut(s) | 366 |
| BseGI | GGATG | 1 cut(s) | 262 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 216 |
| BseMII | CTCAG | 3 cut(s) | 192, 309, 415 |
| BseNI | ACTGG | 2 cut(s) | 322, 343 |
| BseRI | GAGGAG | 3 cut(s) | 216, 352, 403 |
| BseXI | GCAGC | 1 cut(s) | 358 |
| BshFI | GGCC | 2 cut(s) | 8, 399 |
| BslFI | GGGAC | 1 cut(s) | 325 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 216 |
| BsmFI | GGGAC | 1 cut(s) | 325 |
| BsnI | GGCC | 2 cut(s) | 8, 399 |
| Bsp1286I | GDGCHC | 1 cut(s) | 294 |
| Bsp143I | GATC | 1 cut(s) | 391 |
| BspACI | CCGC | 2 cut(s) | 187, 260 |
| BspANI | GGCC | 2 cut(s) | 8, 399 |
| BspCNI | CTCAG | 3 cut(s) | 193, 308, 414 |
| BsrI | ACTGG | 2 cut(s) | 322, 343 |
| BssECI | CCNNGG | 1 cut(s) | 366 |
| BssMI | GATC | 1 cut(s) | 391 |
| BssSI | CACGAG | 1 cut(s) | 238 |
| BssT1I | CCWWGG | 1 cut(s) | 366 |
| Bst2BI | CACGAG | 1 cut(s) | 238 |
| Bst4CI | ACNGT | 2 cut(s) | 51, 72 |
| BstBAI | YACGTR | 1 cut(s) | 308 |
| BstDEI | CTNAG | 3 cut(s) | 201, 295, 401 |
| BstF5I | GGATG | 1 cut(s) | 262 |
| BstKTI | GATC | 1 cut(s) | 394 |
| BstMBI | GATC | 1 cut(s) | 391 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 125, 134, 377 |
| BstNSI | RCATGY | 1 cut(s) | 38 |
| BstV1I | GCAGC | 1 cut(s) | 358 |
| BsuRI | GGCC | 2 cut(s) | 8, 399 |
| BtsCI | GGATG | 1 cut(s) | 262 |
| Csp6I | GTAC | 2 cut(s) | 14, 25 |
| CviAII | CATG | 2 cut(s) | 35, 264 |
| CviQI | GTAC | 2 cut(s) | 14, 25 |
| DdeI | CTNAG | 3 cut(s) | 201, 295, 401 |
| DpnI | GATC | 1 cut(s) | 393 |
| DpnII | GATC | 1 cut(s) | 391 |
| Eco130I | CCWWGG | 1 cut(s) | 366 |
| Eco24I | GRGCYC | 1 cut(s) | 294 |
| Eco32I | GATATC | 1 cut(s) | 465 |
| Eco57I | CTGAAG | 1 cut(s) | 396 |
| EcoRI | GAATTC | 2 cut(s) | 146, 349 |
| EcoRV | GATATC | 1 cut(s) | 465 |
| EcoT14I | CCWWGG | 1 cut(s) | 366 |
| EcoT38I | GRGCYC | 1 cut(s) | 294 |
| ErhI | CCWWGG | 1 cut(s) | 366 |
| FaeI | CATG | 2 cut(s) | 38, 267 |
| FaiI | YATR | 5 cut(s) | 36, 93, 265, 383, 419 |
| FaqI | GGGAC | 1 cut(s) | 325 |
| FatI | CATG | 2 cut(s) | 34, 263 |
| Fnu4HI | GCNGC | 2 cut(s) | 261, 372 |
| FokI | GGATG | 1 cut(s) | 269 |
| FriOI | GRGCYC | 1 cut(s) | 294 |
| Fsp4HI | GCNGC | 2 cut(s) | 261, 372 |
| GluI | GCNGC | 2 cut(s) | 261, 372 |
| HaeIII | GGCC | 2 cut(s) | 8, 399 |
| Hin1II | CATG | 2 cut(s) | 38, 267 |
| HinfI | GANTC | 7 cut(s) | 181, 206, 232, 269, 311, 443, 449 |
| HphI | GGTGA | 1 cut(s) | 176 |
| Hpy166II | GTNNAC | 1 cut(s) | 27 |
| Hpy188I | TCNGA | 4 cut(s) | 145, 202, 231, 448 |
| Hpy188III | TCNNGA | 1 cut(s) | 151 |
| Hpy8I | GTNNAC | 1 cut(s) | 27 |
| HpyCH4III | ACNGT | 2 cut(s) | 51, 72 |
| HpyCH4IV | ACGT | 2 cut(s) | 23, 307 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 125, 134, 377 |
| HpyF3I | CTNAG | 3 cut(s) | 201, 295, 401 |
| HpySE526I | ACGT | 2 cut(s) | 23, 307 |
| Hsp92II | CATG | 2 cut(s) | 38, 267 |
| Kzo9I | GATC | 1 cut(s) | 391 |
| LpnPI | CCDG | 3 cut(s) | 164, 303, 356 |
| Lsp1109I | GCAGC | 1 cut(s) | 358 |
| LweI | GCATC | 1 cut(s) | 247 |
| MaeII | ACGT | 2 cut(s) | 23, 307 |
| MaeIII | GTNAC | 1 cut(s) | 308 |
| MalI | GATC | 1 cut(s) | 393 |
| MboI | GATC | 1 cut(s) | 391 |
| MboII | GAAGA | 2 cut(s) | 264, 420 |
| MfeI | CAATTG | 1 cut(s) | 387 |
| MhlI | GDGCHC | 1 cut(s) | 294 |
| MluCI | AATT | 8 cut(s) | 57, 76, 103, 146, 156, 246, 349, 387 |
| MlyI | GAGTC | 2 cut(s) | 305, 443 |
| MmeI | TCCRAC | 1 cut(s) | 420 |
| MseI | TTAA | 4 cut(s) | 56, 170, 249, 475 |
| MunI | CAATTG | 1 cut(s) | 387 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 125, 134, 377 |
| NdeII | GATC | 1 cut(s) | 391 |
| NlaIII | CATG | 2 cut(s) | 38, 267 |
| NmuCI | GTSAC | 1 cut(s) | 308 |
| NspI | RCATGY | 1 cut(s) | 38 |
| PciI | ACATGT | 1 cut(s) | 34 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 119 |
| PfeI | GAWTC | 5 cut(s) | 181, 206, 232, 269, 443 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 216 |
| PkrI | GCNGC | 2 cut(s) | 262, 373 |
| PleI | GAGTC | 2 cut(s) | 305, 443 |
| PpsI | GAGTC | 2 cut(s) | 305, 443 |
| Ppu21I | YACGTR | 1 cut(s) | 308 |
| PscI | ACATGT | 1 cut(s) | 34 |
| RsaI | GTAC | 2 cut(s) | 15, 26 |
| RsaNI | GTAC | 2 cut(s) | 14, 25 |
| SaqAI | TTAA | 4 cut(s) | 56, 170, 249, 475 |
| SatI | GCNGC | 2 cut(s) | 261, 372 |
| Sau3AI | GATC | 1 cut(s) | 391 |
| SchI | GAGTC | 2 cut(s) | 305, 443 |
| SduI | GDGCHC | 1 cut(s) | 294 |
| SetI | ASST | 7 cut(s) | 26, 139, 301, 310, 382, 424, 472 |
| SfaNI | GCATC | 1 cut(s) | 247 |
| Sse9I | AATT | 8 cut(s) | 57, 76, 103, 146, 156, 246, 349, 387 |
| SsiI | CCGC | 2 cut(s) | 187, 260 |
| StyI | CCWWGG | 1 cut(s) | 366 |
| TaaI | ACNGT | 2 cut(s) | 51, 72 |
| TaiI | ACGT | 2 cut(s) | 26, 310 |
| TaqI | TCGA | 1 cut(s) | 122 |
| TasI | AATT | 8 cut(s) | 57, 76, 103, 146, 156, 246, 349, 387 |
| TauI | GCSGC | 1 cut(s) | 263 |
| TfiI | GAWTC | 5 cut(s) | 181, 206, 232, 269, 443 |
| Tru1I | TTAA | 4 cut(s) | 56, 170, 249, 475 |
| Tru9I | TTAA | 4 cut(s) | 56, 170, 249, 475 |
| TseFI | GTSAC | 1 cut(s) | 308 |
| TseI | GCWGC | 1 cut(s) | 371 |
| Tsp45I | GTSAC | 1 cut(s) | 308 |
| TspDTI | ATGAA | 1 cut(s) | 129 |
| TspGWI | ACGGA | 1 cut(s) | 269 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 216 |
| XapI | RAATTY | 3 cut(s) | 103, 146, 349 |
| XceI | RCATGY | 1 cut(s) | 38 |