Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 38 - 113 | 1e-15 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 89 |
| AclWI | GGATC | 1 cut(s) | 145 |
| AcsI | RAATTY | 1 cut(s) | 212 |
| AgsI | TTSAA | 3 cut(s) | 134, 265, 338 |
| AluBI | AGCT | 2 cut(s) | 7, 248 |
| AluI | AGCT | 2 cut(s) | 7, 248 |
| Alw26I | GTCTC | 2 cut(s) | 34, 87 |
| AlwI | GGATC | 1 cut(s) | 145 |
| Ama87I | CYCGRG | 2 cut(s) | 62, 177 |
| ApoI | RAATTY | 1 cut(s) | 212 |
| AsuC2I | CCSGG | 1 cut(s) | 196 |
| AvaI | CYCGRG | 2 cut(s) | 62, 177 |
| BccI | CCATC | 1 cut(s) | 251 |
| BclI | TGATCA | 1 cut(s) | 297 |
| BcnI | CCSGG | 1 cut(s) | 196 |
| BcoDI | GTCTC | 2 cut(s) | 34, 87 |
| Bme1390I | CCNGG | 1 cut(s) | 196 |
| BmeT110I | CYCGRG | 2 cut(s) | 62, 177 |
| BmiI | GGNNCC | 1 cut(s) | 188 |
| BmrFI | CCNGG | 1 cut(s) | 196 |
| BmsI | GCATC | 1 cut(s) | 109 |
| Bpu10I | CCTNAGC | 1 cut(s) | 154 |
| BpuMI | CCSGG | 1 cut(s) | 196 |
| BsaI | GGTCTC | 1 cut(s) | 87 |
| BsaJI | CCNNGG | 1 cut(s) | 39 |
| Bse1I | ACTGG | 1 cut(s) | 92 |
| BseDI | CCNNGG | 1 cut(s) | 39 |
| BseGI | GGATG | 1 cut(s) | 164 |
| BseNI | ACTGG | 1 cut(s) | 92 |
| BsiHKCI | CYCGRG | 2 cut(s) | 62, 177 |
| BsiSI | CCGG | 1 cut(s) | 195 |
| BsmAI | GTCTC | 2 cut(s) | 34, 87 |
| Bso31I | GGTCTC | 1 cut(s) | 87 |
| BsoBI | CYCGRG | 2 cut(s) | 62, 177 |
| Bsp143I | GATC | 3 cut(s) | 137, 277, 297 |
| BspACI | CCGC | 1 cut(s) | 89 |
| BspLI | GGNNCC | 1 cut(s) | 188 |
| BspPI | GGATC | 1 cut(s) | 145 |
| BspTNI | GGTCTC | 1 cut(s) | 87 |
| BsrI | ACTGG | 1 cut(s) | 92 |
| BssECI | CCNNGG | 1 cut(s) | 39 |
| BssMI | GATC | 3 cut(s) | 137, 277, 297 |
| BssT1I | CCWWGG | 1 cut(s) | 39 |
| Bst4CI | ACNGT | 1 cut(s) | 116 |
| Bst6I | CTCTTC | 1 cut(s) | 37 |
| BstC8I | GCNNGC | 1 cut(s) | 46 |
| BstDEI | CTNAG | 1 cut(s) | 154 |
| BstF5I | GGATG | 1 cut(s) | 164 |
| BstKTI | GATC | 3 cut(s) | 140, 280, 300 |
| BstMAI | GTCTC | 2 cut(s) | 34, 87 |
| BstMBI | GATC | 3 cut(s) | 137, 277, 297 |
| BstNSI | RCATGY | 1 cut(s) | 346 |
| BstSCI | CCNGG | 1 cut(s) | 194 |
| BtsCI | GGATG | 1 cut(s) | 164 |
| BtsIMutI | CAGTG | 1 cut(s) | 231 |
| Cac8I | GCNNGC | 1 cut(s) | 46 |
| CviAII | CATG | 3 cut(s) | 301, 329, 343 |
| CviJI | RGCY | 4 cut(s) | 7, 153, 248, 261 |
| CviKI_1 | RGCY | 4 cut(s) | 7, 153, 248, 261 |
| DdeI | CTNAG | 1 cut(s) | 154 |
| DpnI | GATC | 3 cut(s) | 139, 279, 299 |
| DpnII | GATC | 3 cut(s) | 137, 277, 297 |
| Eam1104I | CTCTTC | 1 cut(s) | 37 |
| EarI | CTCTTC | 1 cut(s) | 37 |
| Eco130I | CCWWGG | 1 cut(s) | 39 |
| Eco31I | GGTCTC | 1 cut(s) | 87 |
| Eco32I | GATATC | 1 cut(s) | 72 |
| Eco88I | CYCGRG | 2 cut(s) | 62, 177 |
| EcoRV | GATATC | 1 cut(s) | 72 |
| EcoT14I | CCWWGG | 1 cut(s) | 39 |
| ErhI | CCWWGG | 1 cut(s) | 39 |
| FaeI | CATG | 3 cut(s) | 304, 332, 346 |
| FaiI | YATR | 3 cut(s) | 302, 330, 344 |
| FatI | CATG | 3 cut(s) | 300, 328, 342 |
| FauI | CCCGC | 1 cut(s) | 96 |
| FbaI | TGATCA | 1 cut(s) | 297 |
| FokI | GGATG | 1 cut(s) | 171 |
| HapII | CCGG | 1 cut(s) | 195 |
| Hin1II | CATG | 3 cut(s) | 304, 332, 346 |
| HindIII | AAGCTT | 1 cut(s) | 5 |
| HinfI | GANTC | 3 cut(s) | 27, 173, 311 |
| HpaII | CCGG | 1 cut(s) | 195 |
| Hpy188I | TCNGA | 1 cut(s) | 282 |
| Hpy188III | TCNNGA | 2 cut(s) | 62, 355 |
| HpyAV | CCTTC | 1 cut(s) | 128 |
| HpyCH4III | ACNGT | 1 cut(s) | 116 |
| HpyCH4V | TGCA | 2 cut(s) | 48, 328 |
| HpyF3I | CTNAG | 1 cut(s) | 154 |
| Hsp92II | CATG | 3 cut(s) | 304, 332, 346 |
| Ksp22I | TGATCA | 1 cut(s) | 297 |
| Kzo9I | GATC | 3 cut(s) | 137, 277, 297 |
| LmnI | GCTCC | 1 cut(s) | 207 |
| LpnPI | CCDG | 3 cut(s) | 105, 135, 208 |
| LweI | GCATC | 1 cut(s) | 109 |
| MaeIII | GTNAC | 1 cut(s) | 170 |
| MalI | GATC | 3 cut(s) | 139, 279, 299 |
| MboI | GATC | 3 cut(s) | 137, 277, 297 |
| MboII | GAAGA | 1 cut(s) | 24 |
| MluCI | AATT | 2 cut(s) | 212, 220 |
| MlyI | GAGTC | 2 cut(s) | 36, 167 |
| MnlI | CCTC | 2 cut(s) | 313, 325 |
| MslI | CAYNNNNRTG | 1 cut(s) | 356 |
| MspA1I | CMGCKG | 1 cut(s) | 248 |
| MspI | CCGG | 1 cut(s) | 195 |
| MspR9I | CCNGG | 1 cut(s) | 196 |
| NciI | CCSGG | 1 cut(s) | 196 |
| NdeII | GATC | 3 cut(s) | 137, 277, 297 |
| NlaIII | CATG | 3 cut(s) | 304, 332, 346 |
| NlaIV | GGNNCC | 1 cut(s) | 188 |
| NmuCI | GTSAC | 1 cut(s) | 170 |
| NspI | RCATGY | 1 cut(s) | 346 |
| PfeI | GAWTC | 1 cut(s) | 311 |
| PleI | GAGTC | 2 cut(s) | 35, 167 |
| PpsI | GAGTC | 2 cut(s) | 35, 167 |
| PspN4I | GGNNCC | 1 cut(s) | 188 |
| PvuII | CAGCTG | 1 cut(s) | 248 |
| RseI | CAYNNNNRTG | 1 cut(s) | 356 |
| Sau3AI | GATC | 3 cut(s) | 137, 277, 297 |
| SchI | GAGTC | 2 cut(s) | 36, 167 |
| ScrFI | CCNGG | 1 cut(s) | 196 |
| SetI | ASST | 4 cut(s) | 9, 250, 324, 336 |
| SfaNI | GCATC | 1 cut(s) | 109 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 356 |
| Sse9I | AATT | 2 cut(s) | 212, 220 |
| SsiI | CCGC | 1 cut(s) | 89 |
| StyD4I | CCNGG | 1 cut(s) | 194 |
| StyI | CCWWGG | 1 cut(s) | 39 |
| TaaI | ACNGT | 1 cut(s) | 116 |
| TaqI | TCGA | 1 cut(s) | 140 |
| TasI | AATT | 2 cut(s) | 212, 220 |
| TfiI | GAWTC | 1 cut(s) | 311 |
| TscAI | CASTG | 1 cut(s) | 231 |
| TseFI | GTSAC | 1 cut(s) | 170 |
| Tsp45I | GTSAC | 1 cut(s) | 170 |
| TspDTI | ATGAA | 3 cut(s) | 17, 86, 340 |
| TspGWI | ACGGA | 1 cut(s) | 179 |
| TspRI | CASTG | 1 cut(s) | 231 |
| XapI | RAATTY | 1 cut(s) | 212 |
| XceI | RCATGY | 1 cut(s) | 346 |