Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 193 |
| AccI | GTMKAC | 2 cut(s) | 176, 384 |
| AccII | CGCG | 1 cut(s) | 151 |
| AciI | CCGC | 4 cut(s) | 149, 237, 272, 402 |
| AclWI | GGATC | 1 cut(s) | 121 |
| AcoI | YGGCCR | 1 cut(s) | 399 |
| AcsI | RAATTY | 1 cut(s) | 116 |
| AcuI | CTGAAG | 1 cut(s) | 107 |
| AfaI | GTAC | 1 cut(s) | 22 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 209, 348 |
| AgsI | TTSAA | 2 cut(s) | 54, 111 |
| AjnI | CCWGG | 1 cut(s) | 239 |
| AluBI | AGCT | 2 cut(s) | 139, 391 |
| AluI | AGCT | 2 cut(s) | 139, 391 |
| Alw26I | GTCTC | 1 cut(s) | 179 |
| AlwI | GGATC | 1 cut(s) | 121 |
| AoxI | GGCC | 1 cut(s) | 399 |
| ApeKI | GCWGC | 2 cut(s) | 104, 139 |
| ApoI | RAATTY | 1 cut(s) | 116 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 120 |
| AsuHPI | GGTGA | 1 cut(s) | 289 |
| BanII | GRGCYC | 1 cut(s) | 314 |
| BbvI | GCAGC | 2 cut(s) | 91, 126 |
| BccI | CCATC | 1 cut(s) | 416 |
| BceAI | ACGGC | 1 cut(s) | 377 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 141, 175 |
| BciT130I | CCWGG | 1 cut(s) | 241 |
| BcoDI | GTCTC | 1 cut(s) | 179 |
| BisI | GCNGC | 4 cut(s) | 105, 140, 237, 402 |
| BlsI | GCNGC | 4 cut(s) | 106, 141, 238, 403 |
| Bme1390I | CCNGG | 1 cut(s) | 241 |
| BmiI | GGNNCC | 1 cut(s) | 313 |
| BmrFI | CCNGG | 1 cut(s) | 241 |
| BmsI | GCATC | 2 cut(s) | 171, 223 |
| BpmI | CTGGAG | 2 cut(s) | 301, 315 |
| BsaI | GGTCTC | 1 cut(s) | 179 |
| BsaJI | CCNNGG | 1 cut(s) | 240 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 288, 318 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 209, 348 |
| Bse118I | RCCGGY | 1 cut(s) | 397 |
| Bse1I | ACTGG | 2 cut(s) | 361, 424 |
| BseBI | CCWGG | 1 cut(s) | 241 |
| BseDI | CCNNGG | 1 cut(s) | 240 |
| BseGI | GGATG | 2 cut(s) | 238, 250 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 209, 348 |
| BseNI | ACTGG | 2 cut(s) | 361, 424 |
| BseRI | GAGGAG | 1 cut(s) | 304 |
| BseX3I | CGGCCG | 1 cut(s) | 399 |
| BseXI | GCAGC | 2 cut(s) | 91, 126 |
| Bsh1236I | CGCG | 1 cut(s) | 151 |
| Bsh1285I | CGRYCG | 1 cut(s) | 402 |
| BshFI | GGCC | 1 cut(s) | 401 |
| BsiEI | CGRYCG | 1 cut(s) | 402 |
| BsiSI | CCGG | 1 cut(s) | 398 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 209, 348 |
| BsmAI | GTCTC | 1 cut(s) | 179 |
| BsnI | GGCC | 1 cut(s) | 401 |
| Bso31I | GGTCTC | 1 cut(s) | 179 |
| Bsp1286I | GDGCHC | 1 cut(s) | 314 |
| Bsp143I | GATC | 2 cut(s) | 126, 169 |
| BspACI | CCGC | 4 cut(s) | 149, 237, 272, 402 |
| BspANI | GGCC | 1 cut(s) | 401 |
| BspFNI | CGCG | 1 cut(s) | 151 |
| BspHI | TCATGA | 1 cut(s) | 283 |
| BspLI | GGNNCC | 1 cut(s) | 313 |
| BspPI | GGATC | 1 cut(s) | 121 |
| BspTNI | GGTCTC | 1 cut(s) | 179 |
| BsrFI | RCCGGY | 1 cut(s) | 397 |
| BsrI | ACTGG | 2 cut(s) | 361, 424 |
| BssAI | RCCGGY | 1 cut(s) | 397 |
| BssECI | CCNNGG | 1 cut(s) | 240 |
| BssMI | GATC | 2 cut(s) | 126, 169 |
| BssNAI | GTATAC | 1 cut(s) | 385 |
| Bst1107I | GTATAC | 1 cut(s) | 385 |
| Bst2UI | CCWGG | 1 cut(s) | 241 |
| Bst4CI | ACNGT | 1 cut(s) | 351 |
| BstC8I | GCNNGC | 1 cut(s) | 399 |
| BstDEI | CTNAG | 1 cut(s) | 180 |
| BstF5I | GGATG | 2 cut(s) | 238, 250 |
| BstFNI | CGCG | 1 cut(s) | 151 |
| BstKTI | GATC | 2 cut(s) | 129, 172 |
| BstMAI | GTCTC | 1 cut(s) | 179 |
| BstMBI | GATC | 2 cut(s) | 126, 169 |
| BstMCI | CGRYCG | 1 cut(s) | 402 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 95, 104, 148 |
| BstNI | CCWGG | 1 cut(s) | 241 |
| BstNSI | RCATGY | 1 cut(s) | 61 |
| BstSCI | CCNGG | 1 cut(s) | 239 |
| BstUI | CGCG | 1 cut(s) | 151 |
| BstV1I | GCAGC | 2 cut(s) | 91, 126 |
| BstX2I | RGATCY | 1 cut(s) | 126 |
| BstYI | RGATCY | 1 cut(s) | 126 |
| BstZ17I | GTATAC | 1 cut(s) | 385 |
| BstZI | CGGCCG | 1 cut(s) | 399 |
| BsuRI | GGCC | 1 cut(s) | 401 |
| BtgZI | GCGATG | 1 cut(s) | 148 |
| BtsCI | GGATG | 2 cut(s) | 238, 250 |
| Cac8I | GCNNGC | 1 cut(s) | 399 |
| CciI | TCATGA | 1 cut(s) | 283 |
| Cfr10I | RCCGGY | 1 cut(s) | 397 |
| Csp6I | GTAC | 1 cut(s) | 21 |
| CviAII | CATG | 2 cut(s) | 58, 284 |
| CviJI | RGCY | 5 cut(s) | 139, 312, 364, 391, 401 |
| CviKI_1 | RGCY | 5 cut(s) | 139, 312, 364, 391, 401 |
| CviQI | GTAC | 1 cut(s) | 21 |
| DdeI | CTNAG | 1 cut(s) | 180 |
| DpnI | GATC | 2 cut(s) | 128, 171 |
| DpnII | GATC | 2 cut(s) | 126, 169 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 193 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 193 |
| EaeI | YGGCCR | 1 cut(s) | 399 |
| EagI | CGGCCG | 1 cut(s) | 399 |
| EclXI | CGGCCG | 1 cut(s) | 399 |
| Eco24I | GRGCYC | 1 cut(s) | 314 |
| Eco31I | GGTCTC | 1 cut(s) | 179 |
| Eco52I | CGGCCG | 1 cut(s) | 399 |
| Eco57I | CTGAAG | 1 cut(s) | 107 |
| EcoRI | GAATTC | 1 cut(s) | 116 |
| EcoRII | CCWGG | 1 cut(s) | 239 |
| EcoT38I | GRGCYC | 1 cut(s) | 314 |
| FaeI | CATG | 2 cut(s) | 61, 287 |
| FaiI | YATR | 8 cut(s) | 18, 35, 59, 68, 70, 72, 285, 385 |
| FatI | CATG | 2 cut(s) | 57, 283 |
| FauI | CCCGC | 1 cut(s) | 156 |
| FblI | GTMKAC | 2 cut(s) | 176, 384 |
| Fnu4HI | GCNGC | 4 cut(s) | 105, 140, 237, 402 |
| FokI | GGATG | 2 cut(s) | 245, 257 |
| FriOI | GRGCYC | 1 cut(s) | 314 |
| Fsp4HI | GCNGC | 4 cut(s) | 105, 140, 237, 402 |
| GluI | GCNGC | 4 cut(s) | 105, 140, 237, 402 |
| GsuI | CTGGAG | 2 cut(s) | 301, 315 |
| HaeIII | GGCC | 1 cut(s) | 401 |
| HapII | CCGG | 1 cut(s) | 398 |
| Hin1II | CATG | 2 cut(s) | 61, 287 |
| HincII | GTYRAC | 1 cut(s) | 417 |
| HindII | GTYRAC | 1 cut(s) | 417 |
| HinfI | GANTC | 4 cut(s) | 251, 280, 287, 297 |
| HpaI | GTTAAC | 1 cut(s) | 417 |
| HpaII | CCGG | 1 cut(s) | 398 |
| HphI | GGTGA | 1 cut(s) | 289 |
| Hpy166II | GTNNAC | 4 cut(s) | 177, 354, 385, 417 |
| Hpy188I | TCNGA | 1 cut(s) | 126 |
| Hpy188III | TCNNGA | 4 cut(s) | 284, 294, 318, 368 |
| Hpy8I | GTNNAC | 4 cut(s) | 177, 354, 385, 417 |
| HpyAV | CCTTC | 4 cut(s) | 22, 87, 109, 131 |
| HpyCH4III | ACNGT | 1 cut(s) | 351 |
| HpyCH4V | TGCA | 2 cut(s) | 162, 333 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 95, 104, 148 |
| HpyF3I | CTNAG | 1 cut(s) | 180 |
| Hsp92II | CATG | 2 cut(s) | 61, 287 |
| KroI | GCCGGC | 1 cut(s) | 397 |
| KroNI | GCCGGC | 1 cut(s) | 399 |
| KspAI | GTTAAC | 1 cut(s) | 417 |
| Kzo9I | GATC | 2 cut(s) | 126, 169 |
| LmnI | GCTCC | 1 cut(s) | 317 |
| LpnPI | CCDG | 7 cut(s) | 226, 253, 279, 331, 342, 405, 411 |
| Lsp1109I | GCAGC | 2 cut(s) | 91, 126 |
| LweI | GCATC | 2 cut(s) | 171, 223 |
| MalI | GATC | 2 cut(s) | 128, 171 |
| MboI | GATC | 2 cut(s) | 126, 169 |
| MboII | GAAGA | 1 cut(s) | 260 |
| MflI | RGATCY | 1 cut(s) | 126 |
| MhlI | GDGCHC | 1 cut(s) | 314 |
| MluCI | AATT | 3 cut(s) | 116, 221, 371 |
| MlyI | GAGTC | 1 cut(s) | 306 |
| MnlI | CCTC | 4 cut(s) | 141, 213, 301, 325 |
| MroNI | GCCGGC | 1 cut(s) | 397 |
| MroXI | GAANNNNTTC | 1 cut(s) | 120 |
| MseI | TTAA | 3 cut(s) | 219, 224, 416 |
| MspI | CCGG | 1 cut(s) | 398 |
| MspR9I | CCNGG | 1 cut(s) | 241 |
| MvaI | CCWGG | 1 cut(s) | 241 |
| MvnI | CGCG | 1 cut(s) | 151 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 95, 104, 148 |
| NaeI | GCCGGC | 1 cut(s) | 399 |
| NdeII | GATC | 2 cut(s) | 126, 169 |
| NgoMIV | GCCGGC | 1 cut(s) | 397 |
| NlaIII | CATG | 2 cut(s) | 61, 287 |
| NlaIV | GGNNCC | 1 cut(s) | 313 |
| NspI | RCATGY | 1 cut(s) | 61 |
| PagI | TCATGA | 1 cut(s) | 283 |
| PdiI | GCCGGC | 1 cut(s) | 399 |
| PdmI | GAANNNNTTC | 1 cut(s) | 120 |
| PfeI | GAWTC | 3 cut(s) | 251, 280, 287 |
| PkrI | GCNGC | 4 cut(s) | 106, 141, 238, 403 |
| PleI | GAGTC | 1 cut(s) | 305 |
| PpsI | GAGTC | 1 cut(s) | 305 |
| Psp6I | CCWGG | 1 cut(s) | 239 |
| PspGI | CCWGG | 1 cut(s) | 239 |
| PspN4I | GGNNCC | 1 cut(s) | 313 |
| PsuI | RGATCY | 1 cut(s) | 126 |
| RsaI | GTAC | 1 cut(s) | 22 |
| RsaNI | GTAC | 1 cut(s) | 21 |
| SaqAI | TTAA | 3 cut(s) | 219, 224, 416 |
| SatI | GCNGC | 4 cut(s) | 105, 140, 237, 402 |
| Sau3AI | GATC | 2 cut(s) | 126, 169 |
| SchI | GAGTC | 1 cut(s) | 306 |
| ScrFI | CCNGG | 1 cut(s) | 241 |
| SduI | GDGCHC | 1 cut(s) | 314 |
| SetI | ASST | 3 cut(s) | 40, 141, 393 |
| SfaNI | GCATC | 2 cut(s) | 171, 223 |
| Sse9I | AATT | 3 cut(s) | 116, 221, 371 |
| SsiI | CCGC | 4 cut(s) | 149, 237, 272, 402 |
| StyD4I | CCNGG | 1 cut(s) | 239 |
| TaaI | ACNGT | 1 cut(s) | 351 |
| TaqI | TCGA | 1 cut(s) | 80 |
| TasI | AATT | 3 cut(s) | 116, 221, 371 |
| TauI | GCSGC | 2 cut(s) | 239, 404 |
| TfiI | GAWTC | 3 cut(s) | 251, 280, 287 |
| Tru1I | TTAA | 3 cut(s) | 219, 224, 416 |
| Tru9I | TTAA | 3 cut(s) | 219, 224, 416 |
| TseI | GCWGC | 2 cut(s) | 104, 139 |
| TspDTI | ATGAA | 2 cut(s) | 261, 272 |
| TspGWI | ACGGA | 1 cut(s) | 245 |
| XapI | RAATTY | 1 cut(s) | 116 |
| XceI | RCATGY | 1 cut(s) | 61 |
| XmiI | GTMKAC | 2 cut(s) | 176, 384 |
| XmnI | GAANNNNTTC | 1 cut(s) | 120 |