RchiOBHm_Chr6g0277111

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000093
Physical Location & Seq
Forward (+)
39493384 .. 39495135
1752 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ24859

Sequence Viewer

Length: 1386 bp
ATGGTTGGCAATGGTTGCTCAATTGACATTTGGAAGGACAAATGGATCTTGAACTCTGAGTTGGGTTATATCCGTCCCATTATGCCCATCTCTCCTTCTGTGCCTTCCAAAGTGTCTAACTTAATTGATTGGGATTCTTATACATGGAATCTACAACCAATTCTTGGCCTAATTACAGAGAGTGACATGCAAGAGATCAAGATGCAGATGTTCAGTGACACCCTGGTTGAAGACAAATTAATTTGGCCCGCAACAAAGCATGGCTCCTACACTGTAAAATCAGGGTATAATCTCTTCCATTCTCTAAAGTTCAAGCCCACAGGACATATGAGCCACTCCTCTCACAGAGTAAACCAGGTTGTCTGGACTACTATTTGGTCTATCCAAACCCTCCCCAAGATCAAGCATTTTCTGTGGCAAGCTGTCAACAATGCTATCTCTACTTACTACAATCTTTTCAAGCGAAAGATTGTTGCTTCCCCTATTTGTCCAAAATGTGGCCTAGCTCCGGAAACAATTGAACACATCATCCTTCTATGCCCCATTGCTATATGCACTTGGTTTGCTTGTTCATTAAATTACAAAATTAATGTCCAAGAGATTACCTCAGTTGATAGATGGATTGAACAAATTCTCAAGCTAGCAGGCCCACATAAGGAGCTTCAAAAAAGTTGCCTTACCACCATATCCTTCATCTTCTGGGAGCTGTGGAAGAGTAGATGTCAATTTATCTATCAGGCAACCAATACTCATCCAATGATGATTGCATCTCGAGCAGAAAAAGCAGCCCTGGAGTTCTTGAAAGCAAAGAAACATGGTCATCAGCTGGAGCCAGGTATGATTTCTAATTGTACCCCCTCCCTCTCTGTCCCTATTCCTACCTCCCCTTTCCCCATTCACACTCCAAACCACACTCTCTCCTCCCAAAACCCAAACATTGCCAACCTTTCACACTTCTTCTCACGTCTTATGCAACCTATCTCCAGTCACAGTGTCACCAACACTCAAAATCAACAAGCCCCTGACCATCCGTCTGCCATCCTTGCCCTCTCTCTTGCCCAGAAGTACACTCGTCTCCCTATACAGATCGAATCGGATTGTCAAGAGCTAGTAAAAGACATCAACGGTATAGATTCTGGTAGGGATTGGCGAATCTCCCCTGTGATTGCTCGAATTCGAGCAGCTCCTCCCCCATGCAGGCTACTCCCATGGTCGTGGATTTCCAGAAAAGCAAACTGCGCAGCCCACCATATTGCGTCGCTTAGTGTGAGGAAGACGTGCCCGGATGTCTGGATTGACAGGCCGCCGTCTTCCCTGGTCCATGTTCTCTCACGCGATGGATTACCTTGTCCTCCGCCGGCGTCAATGGCTGGGTTGAGACTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

461

Amino Acids

52.06

Weight (kDa)

9.17

Isoelectric Point (pI)

44.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RVT PF13966 91 - 187 2.2e-15 zinc-binding in reverse transcriptase
RVT_3 PF13456 332 - 420 4.4e-06 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000093)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G09490
fragaria_vesca FvH4_1g23791 FvH4_2g01641 FvH4_2g04612 FvH4_2g06831 FvH4_2g07841 FvH4_2g13581 FvH4_2g27220 FvH4_2g30621 FvH4_2g34753 FvH4_3g10392 FvH4_3g24291 FvH4_3g25030 FvH4_3g29361 FvH4_3g31372 FvH4_3g32402 FvH4_3g43651 FvH4_4g03830 FvH4_4g05481 FvH4_4g20431 FvH4_4g21421 FvH4_4g25931 FvH4_5g08801 FvH4_5g21021 FvH4_5g26254 FvH4_5g30931 FvH4_5g31281 FvH4_5g33581 FvH4_5g35622 FvH4_6g02100 FvH4_6g07963 FvH4_6g11620 FvH4_6g16031 FvH4_6g19041 FvH4_6g24211 FvH4_6g24271 FvH4_6g30670 FvH4_6g49540 FvH4_7g25914
malus_domestica MD03G1245200.v1.1 MD04G1168000.v1.1 MD09G1242600.v1.1 MD15G1334000.v1.1 MD17G1165700.v1.1
prunus_persica Prupe.1G073500_v2.0.a1 Prupe.1G283700_v2.0.a1 Prupe.1G524100_v2.0.a1 Prupe.2G022700_v2.0.a1 Prupe.2G022800_v2.0.a1 Prupe.2G022800_v2.0.a1 Prupe.2G044300_v2.0.a1 Prupe.2G048800_v2.0.a1 Prupe.2G092000_v2.0.a1 Prupe.2G216500_v2.0.a1 Prupe.2G216600_v2.0.a1 Prupe.2G216600_v2.0.a1 Prupe.3G103400_v2.0.a1 Prupe.3G143300_v2.0.a1 Prupe.3G190000_v2.0.a1 Prupe.3G219800_v2.0.a1 Prupe.4G177800_v2.0.a1 Prupe.4G261300_v2.0.a1 Prupe.5G044600_v2.0.a1 Prupe.5G067400_v2.0.a1 Prupe.7G083900_v2.0.a1 Prupe.7G120900_v2.0.a1 Prupe.8G032200_v2.0.a1 Prupe.8G036100_v2.0.a1 Prupe.8G042700_v2.0.a1
pyrus_communis pycom01g21710 pycom02g19770 pycom03g05120 pycom05g01370 pycom05g08780 pycom05g10120 pycom07g01370 pycom07g05930 pycom08g15760 pycom08g18090 pycom08g21060 pycom09g03880 pycom10g03870 pycom13g22240 pycom16g05120 pycom16g17170 pycom17g12180 pycom17g16290 pycom17g21230 pycom17g24990 pycom215g00100
rosa_chinensis RchiOBHm_Chr1g0323031 RchiOBHm_Chr1g0324391 RchiOBHm_Chr1g0326401 RchiOBHm_Chr1g0327811 RchiOBHm_Chr1g0332521 RchiOBHm_Chr1g0336501 RchiOBHm_Chr1g0346021 RchiOBHm_Chr1g0347191 RchiOBHm_Chr1g0367181 RchiOBHm_Chr2g0089441 RchiOBHm_Chr2g0115441 RchiOBHm_Chr3g0490691 RchiOBHm_Chr4g0395251 RchiOBHm_Chr4g0398081 RchiOBHm_Chr4g0409451 RchiOBHm_Chr4g0413041 RchiOBHm_Chr4g0415471 RchiOBHm_Chr4g0420961 RchiOBHm_Chr5g0040301 RchiOBHm_Chr5g0070651 RchiOBHm_Chr6g0263011 RchiOBHm_Chr6g0270721 RchiOBHm_Chr6g0277111 RchiOBHm_Chr7g0179771 RchiOBHm_Chr7g0223051 RchiOBHm_Chr7g0225031 RchiOBHm_Chr7g0225091
rosa_laevigata RLG00000001668 RLG00000001672 RLG00000001676 RLG00000007762 RLG00000008994 RLG00000011117 RLG00000013729 RLG00000013839 RLG00000014759 RLG00000016638 RLG00000018535 RLG00000018614 RLG00000018646 RLG00000020679 RLG00000023337 RLG00000029348 RLG00000035891 RLG00000035912
rosa_multiflora Rmu_co8152500.1_g000001 Rmu_co8203314.1_g000001 Rmu_co8383183.1_g000001 Rmu_sc0000293.1_g000033 Rmu_sc0000367.1_g000226 Rmu_sc0000512.1_g000023 Rmu_sc0000594.1_g000059 Rmu_sc0000654.1_g000022 Rmu_sc0000654.1_g000047 Rmu_sc0000706.1_g000037 Rmu_sc0001348.1_g000008 Rmu_sc0001385.1_g000024 Rmu_sc0001405.1_g000002 Rmu_sc0001521.1_g000048 Rmu_sc0001932.1_g000008 Rmu_sc0001932.1_g000009 Rmu_sc0002535.1_g000011 Rmu_sc0002908.1_g000019 Rmu_sc0003709.1_g000004 Rmu_sc0003882.1_g000054 Rmu_sc0004035.1_g000007 Rmu_sc0004041.1_g000007 Rmu_sc0004288.1_g000011 Rmu_sc0004569.1_g000004 Rmu_sc0004677.1_g000016 Rmu_sc0004834.1_g000010 Rmu_sc0005193.1_g000008 Rmu_sc0005354.1_g000009 Rmu_sc0006514.1_g000021 Rmu_sc0006691.1_g000001 Rmu_sc0006888.1_g000021 Rmu_sc0006889.1_g000013 Rmu_sc0008096.1_g000017 Rmu_sc0008378.1_g000003 Rmu_sc0009127.1_g000005 Rmu_sc0009191.1_g000016 Rmu_sc0009687.1_g000018 Rmu_sc0009709.1_g000005 Rmu_sc0009880.1_g000015 Rmu_sc0011710.1_g000001 Rmu_sc0012615.1_g000004 Rmu_sc0016091.1_g000002 Rmu_sc0022339.1_g000006 Rmu_sc0026537.1_g000002 Rmu_sc0027689.1_g000002 Rmu_sc0036222.1_g000001 Rmu_sc0040890.1_g000001 Rmu_ssc0000148.1_g000006 Rmu_ssc0000151.1_g000017 Rmu_ssc0000404.1_g000018 Rmu_ssc0000449.1_g000009
rosa_roxburghii Rroxscaffold_1G00017760 Rroxscaffold_1G00059150 Rroxscaffold_2G00142560 Rroxscaffold_3G00220440 Rroxscaffold_3G00231700 Rroxscaffold_3G00232400 Rroxscaffold_3G00274510 Rroxscaffold_4G00288790 Rroxscaffold_4G00305680 Rroxscaffold_4G00314880 Rroxscaffold_4G00314900 Rroxscaffold_5G00334590 Rroxscaffold_6G00394110 Rroxscaffold_6G00415860 Rroxscaffold_7G00168240 Rroxscaffold_7G00204400 Rroxscaffold_7G00207840
rosa_rugosa Rorug01G0034900 Rorug02G0079500 Rorug02G0229000 Rorug02G0229100 Rorug02G0291400 Rorug02G0298800 Rorug03G0046400 Rorug03G0064700 Rorug03G0077300 Rorug03G0199000 Rorug03G0200400 Rorug04G0205200 Rorug05G0025400 Rorug05G0127400 Rorug05G0192100 Rorug05G0453400 Rorug05G0538300 Rorug06G0035200 Rorug06G0241000 Rorug06G0268300 Rorug07G0120300 Rorug07G0145000 Rorug07G0209100 Rorug07G0240500 Rorug07G0271700
rosa_samantha Rh1AG179100 Rh1BG106900 Rh1BG163400 Rh1BG163500 Rh1BG323500 Rh2CG447900 Rh2DG503700 Rh3AG293600 Rh3CG229100 Rh3DG221500 Rh4AG106000 Rh4BG267700 Rh4CG062500 Rh4CG090100 Rh4CG114800 Rh5AG038400 Rh5BG395400 Rh5CG441700 Rh5CG572000 Rh6AG222400 Rh6AG264500 Rh6BG137400 Rh6BG225700 Rh6CG144300 Rh6DG087600 Rh6DG096000 Rh6DG362400 Rh6DG390200 Rh7AG207500 Rh7AG324700 Rh7AG388800 Rh7AG437100 Rh7BG019000 Rh7BG374600 Rh7CG028700 Rh7CG341500 Rh7CG408000 Rh7CG408300 Rh7DG354600
rosa_wichuraiana Rw0G009630 Rw0G012170 Rw4G022700 Rw5G028420 Rw5G029490 Rw6G007220 Rw6G007410 Rw6G017880 Rw7G012440 Rw7G021830 Rw7G027490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1240
AccB7I CCANNNNNTGG 2 cut(s) 164, 497
AccII CGCG 1 cut(s) 1335
AccIII TCCGGA 1 cut(s) 508
AciI CCGC 3 cut(s) 249, 1304, 1355
AclWI GGATC 1 cut(s) 53
AcsI RAATTY 2 cut(s) 630, 1173
AcyI GRCGYC 1 cut(s) 1361
AfaI GTAC 2 cut(s) 853, 1067
AfiI CCNNNNNNNGG 5 cut(s) 164, 497, 508, 655, 1197
AgsI TTSAA 8 cut(s) 52, 230, 313, 460, 521, 626, 665, 802
AhdI GACNNNNNGTC 1 cut(s) 1030
AjiI CACGTC 2 cut(s) 965, 1278
AjnI CCWGG 5 cut(s) 222, 354, 789, 832, 1314
AjuI GAANNNNNNNTTGG 2 cut(s) 44, 76
AloI GAACNNNNNNTCC 2 cut(s) 513, 545
AluBI AGCT 8 cut(s) 422, 506, 640, 661, 706, 826, 1108, 1184
AluI AGCT 8 cut(s) 422, 506, 640, 661, 706, 826, 1108, 1184
Alw26I GTCTC 2 cut(s) 1079, 1372
AlwI GGATC 1 cut(s) 53
Ama87I CYCGRG 1 cut(s) 771
Aor13HI TCCGGA 1 cut(s) 508
AoxI GGCC 5 cut(s) 166, 245, 499, 646, 1301
ApeKI GCWGC 3 cut(s) 785, 1181, 1241
ApoI RAATTY 2 cut(s) 630, 1173
ArsI GACNNNNNNTTYG 2 cut(s) 576, 608
AseI ATTAAT 2 cut(s) 239, 588
Asp700I GAANNNNTTC 1 cut(s) 630
AspLEI GCGC 1 cut(s) 1241
AspS9I GGNCC 3 cut(s) 246, 647, 1318
AsuC2I CCSGG 1 cut(s) 1283
AsuHPI GGTGA 1 cut(s) 988
AsuNHI GCTAGC 1 cut(s) 640
AvaI CYCGRG 1 cut(s) 771
AvaII GGWCC 1 cut(s) 1318
BaeGI GKGCMC 1 cut(s) 1283
BarI GAAGNNNNNNTAC 2 cut(s) 278, 310
BbsI GAAGAC 3 cut(s) 237, 1280, 1302
BbvI GCAGC 3 cut(s) 797, 1193, 1253
BccI CCATC 5 cut(s) 95, 612, 1035, 1046, 1331
BceAI ACGGC 1 cut(s) 1291
BciT130I CCWGG 5 cut(s) 224, 356, 791, 834, 1316
BcnI CCSGG 1 cut(s) 1283
BcoDI GTCTC 2 cut(s) 1079, 1372
BfaI CTAG 3 cut(s) 503, 641, 1109
BfmI CTRYAG 1 cut(s) 1382
BisI GCNGC 4 cut(s) 786, 1182, 1242, 1304
BlsI GCNGC 4 cut(s) 787, 1183, 1243, 1305
Bme1390I CCNGG 6 cut(s) 224, 356, 791, 834, 1283, 1316
Bme18I GGWCC 1 cut(s) 1318
BmeRI GACNNNNNGTC 1 cut(s) 1030
BmeT110I CYCGRG 1 cut(s) 771
BmgBI CACGTC 2 cut(s) 965, 1278
BmgT120I GGNCC 3 cut(s) 246, 647, 1318
BmiI GGNNCC 2 cut(s) 265, 831
BmrFI CCNGG 6 cut(s) 224, 356, 791, 834, 1283, 1316
BmsI GCATC 2 cut(s) 192, 776
BmtI GCTAGC 1 cut(s) 644
BpiI GAAGAC 3 cut(s) 237, 1280, 1302
BplI GAGNNNNNCTC 2 cut(s) 590, 622
BpmI CTGGAG 3 cut(s) 812, 848, 967
BpuEI CTTGAG 1 cut(s) 620
BpuMI CCSGG 1 cut(s) 1283
BsaHI GRCGYC 1 cut(s) 1361
BsaJI CCNNGG 4 cut(s) 222, 789, 1208, 1314
BsaWI WCCGGW 1 cut(s) 508
BsaXI ACNNNNNCTCC 2 cut(s) 902, 932
Bsc4I CCNNNNNNNGG 5 cut(s) 164, 497, 508, 655, 1197
Bse118I RCCGGY 1 cut(s) 1357
Bse1I ACTGG 1 cut(s) 984
Bse3DI GCAATG 3 cut(s) 16, 543, 936
BseAI TCCGGA 1 cut(s) 508
BseBI CCWGG 5 cut(s) 224, 356, 791, 834, 1316
BseDI CCNNGG 4 cut(s) 222, 789, 1208, 1314
BseGI GGATG 5 cut(s) 528, 751, 1027, 1038, 1291
BseLI CCNNNNNNNGG 5 cut(s) 164, 497, 508, 655, 1197
BseMI GCAATG 3 cut(s) 16, 543, 936
BseMII CTCAG 2 cut(s) 48, 621
BseNI ACTGG 1 cut(s) 984
BseRI GAGGAG 3 cut(s) 328, 910, 1176
BseSI GKGCMC 1 cut(s) 1283
BseXI GCAGC 3 cut(s) 797, 1193, 1253
BseYI CCCAGC 1 cut(s) 1370
Bsh1236I CGCG 1 cut(s) 1335
BshFI GGCC 5 cut(s) 168, 247, 501, 648, 1303
BsiHKCI CYCGRG 1 cut(s) 771
BsiSI CCGG 3 cut(s) 509, 1283, 1358
BslFI GGGAC 2 cut(s) 60, 854
BslI CCNNNNNNNGG 5 cut(s) 164, 497, 508, 655, 1197
BsmAI GTCTC 2 cut(s) 1079, 1372
BsmBI CGTCTC 1 cut(s) 1079
BsmFI GGGAC 2 cut(s) 60, 854
BsnI GGCC 5 cut(s) 168, 247, 501, 648, 1303
BsoBI CYCGRG 1 cut(s) 771
Bsp1286I GDGCHC 1 cut(s) 1283
Bsp13I TCCGGA 1 cut(s) 508
Bsp143I GATC 4 cut(s) 45, 195, 399, 1086
Bsp19I CCATGG 1 cut(s) 1208
BspACI CCGC 3 cut(s) 249, 1304, 1355
BspANI GGCC 5 cut(s) 168, 247, 501, 648, 1303
BspCNI CTCAG 2 cut(s) 49, 620
BspEI TCCGGA 1 cut(s) 508
BspFNI CGCG 1 cut(s) 1335
BspLI GGNNCC 2 cut(s) 265, 831
BspOI GCTAGC 1 cut(s) 644
BspPI GGATC 1 cut(s) 53
BsrDI GCAATG 3 cut(s) 16, 543, 936
BsrFI RCCGGY 1 cut(s) 1357
BsrI ACTGG 1 cut(s) 984
BssAI RCCGGY 1 cut(s) 1357
BssECI CCNNGG 4 cut(s) 222, 789, 1208, 1314
BssMI GATC 4 cut(s) 45, 195, 399, 1086
BssNI GRCGYC 1 cut(s) 1361
BssT1I CCWWGG 1 cut(s) 1208
Bst2UI CCWGG 5 cut(s) 224, 356, 791, 834, 1316
Bst4CI ACNGT 4 cut(s) 274, 992, 1127, 1383
Bst6I CTCTTC 2 cut(s) 299, 707
BstACI GRCGYC 1 cut(s) 1361
BstAPI GCANNNNNTGC 1 cut(s) 15
BstC8I GCNNGC 6 cut(s) 249, 420, 642, 646, 1199, 1359
BstDEI CTNAG 3 cut(s) 57, 607, 1262
BstDSI CCRYGG 1 cut(s) 1208
BstF5I GGATG 5 cut(s) 528, 751, 1027, 1038, 1291
BstFNI CGCG 1 cut(s) 1335
BstHHI GCGC 1 cut(s) 1241
BstKTI GATC 4 cut(s) 48, 198, 402, 1089
BstMAI GTCTC 2 cut(s) 1079, 1372
BstMBI GATC 4 cut(s) 45, 195, 399, 1086
BstMWI GCNNNNNNNGC 6 cut(s) 15, 773, 782, 1043, 1238, 1367
BstNI CCWGG 5 cut(s) 224, 356, 791, 834, 1316
BstNSI RCATGY 1 cut(s) 190
BstSCI CCNGG 6 cut(s) 222, 354, 789, 832, 1281, 1314
BstSFI CTRYAG 1 cut(s) 1382
BstSLI GKGCMC 1 cut(s) 1283
BstUI CGCG 1 cut(s) 1335
BstV1I GCAGC 3 cut(s) 797, 1193, 1253
BstV2I GAAGAC 3 cut(s) 237, 1280, 1302
BstX2I RGATCY 1 cut(s) 45
BstXI CCANNNNNNTGG 1 cut(s) 1215
BstYI RGATCY 1 cut(s) 45
BsuRI GGCC 5 cut(s) 168, 247, 501, 648, 1303
BtgI CCRYGG 1 cut(s) 1208
BtgZI GCGATG 1 cut(s) 1350
BtrI CACGTC 2 cut(s) 965, 1278
BtsCI GGATG 5 cut(s) 528, 751, 1027, 1038, 1291
BtsIMutI CAGTG 3 cut(s) 220, 270, 997
Cac8I GCNNGC 6 cut(s) 249, 420, 642, 646, 1199, 1359
CfoI GCGC 1 cut(s) 1241
Cfr10I RCCGGY 1 cut(s) 1357
Cfr13I GGNCC 3 cut(s) 246, 647, 1318
CseI GACGC 2 cut(s) 1245, 1350
CsiI ACCWGGT 1 cut(s) 354
Csp6I GTAC 2 cut(s) 852, 1066
CviAII CATG 7 cut(s) 144, 187, 260, 815, 1194, 1209, 1322
CviQI GTAC 2 cut(s) 852, 1066
DdeI CTNAG 3 cut(s) 57, 607, 1262
DpnI GATC 4 cut(s) 47, 197, 401, 1088
DpnII GATC 4 cut(s) 45, 195, 399, 1086
DriI GACNNNNNGTC 1 cut(s) 1030
Eam1104I CTCTTC 2 cut(s) 299, 707
Eam1105I GACNNNNNGTC 1 cut(s) 1030
EarI CTCTTC 2 cut(s) 299, 707
EciI GGCGGA 1 cut(s) 1344
Eco130I CCWWGG 1 cut(s) 1208
Eco47I GGWCC 1 cut(s) 1318
Eco88I CYCGRG 1 cut(s) 771
EcoRI GAATTC 1 cut(s) 1173
EcoRII CCWGG 5 cut(s) 222, 354, 789, 832, 1314
EcoT14I CCWWGG 1 cut(s) 1208
ErhI CCWWGG 1 cut(s) 1208
Esp3I CGTCTC 1 cut(s) 1079
FaeI CATG 7 cut(s) 147, 190, 263, 818, 1197, 1212, 1325
FaqI GGGAC 2 cut(s) 60, 854
FatI CATG 7 cut(s) 143, 186, 259, 814, 1193, 1208, 1321
FauI CCCGC 1 cut(s) 256
FauNDI CATATG 1 cut(s) 327
Fnu4HI GCNGC 4 cut(s) 786, 1182, 1242, 1304
FokI GGATG 5 cut(s) 515, 738, 1014, 1025, 1298
Fsp4HI GCNGC 4 cut(s) 786, 1182, 1242, 1304
FspBI CTAG 3 cut(s) 503, 641, 1109
FspI TGCGCA 1 cut(s) 1240
GlaI GCGC 1 cut(s) 1240
GluI GCNGC 4 cut(s) 786, 1182, 1242, 1304
GsaI CCCAGC 1 cut(s) 1374
GsuI CTGGAG 3 cut(s) 812, 848, 967
HaeIII GGCC 5 cut(s) 168, 247, 501, 648, 1303
HapII CCGG 3 cut(s) 509, 1283, 1358
HgaI GACGC 2 cut(s) 1245, 1350
HhaI GCGC 1 cut(s) 1241
Hin1I GRCGYC 1 cut(s) 1361
Hin1II CATG 7 cut(s) 147, 190, 263, 818, 1197, 1212, 1325
Hin6I GCGC 1 cut(s) 1239
HinP1I GCGC 1 cut(s) 1239
HincII GTYRAC 1 cut(s) 427
HindII GTYRAC 1 cut(s) 427
HinfI GANTC 5 cut(s) 134, 148, 1091, 1133, 1152
HpaII CCGG 3 cut(s) 509, 1283, 1358
HphI GGTGA 1 cut(s) 988
Hpy166II GTNNAC 3 cut(s) 352, 427, 1068
Hpy188I TCNGA 2 cut(s) 58, 1096
Hpy188III TCNNGA 9 cut(s) 49, 199, 364, 509, 771, 799, 1103, 1224, 1291
Hpy8I GTNNAC 3 cut(s) 352, 427, 1068
Hpy99I CGWCG 1 cut(s) 1261
HpyAV CCTTC 5 cut(s) 28, 105, 114, 542, 700
HpyCH4III ACNGT 4 cut(s) 274, 992, 1127, 1383
HpyCH4IV ACGT 2 cut(s) 964, 1277
HpyCH4V TGCA 6 cut(s) 190, 205, 555, 767, 973, 1197
HpyF10VI GCNNNNNNNGC 6 cut(s) 15, 773, 782, 1043, 1238, 1367
HpyF3I CTNAG 3 cut(s) 57, 607, 1262
HpySE526I ACGT 2 cut(s) 964, 1277
Hsp92I GRCGYC 1 cut(s) 1361
Hsp92II CATG 7 cut(s) 147, 190, 263, 818, 1197, 1212, 1325
HspAI GCGC 1 cut(s) 1239
Kpn2I TCCGGA 1 cut(s) 508
KroI GCCGGC 1 cut(s) 1357
KroNI GCCGGC 1 cut(s) 1359
Kzo9I GATC 4 cut(s) 45, 195, 399, 1086
LmnI GCTCC 6 cut(s) 269, 511, 658, 703, 829, 1189
Lsp1109I GCAGC 3 cut(s) 797, 1193, 1253
LweI GCATC 2 cut(s) 192, 776
MabI ACCWGGT 1 cut(s) 354
MaeI CTAG 3 cut(s) 503, 641, 1109
MaeII ACGT 2 cut(s) 964, 1277
MaeIII GTNAC 4 cut(s) 182, 215, 986, 994
MalI GATC 4 cut(s) 47, 197, 401, 1088
MboI GATC 4 cut(s) 45, 195, 399, 1086
MboII GAAGA 7 cut(s) 242, 286, 688, 724, 949, 1285, 1302
MfeI CAATTG 2 cut(s) 21, 516
MflI RGATCY 1 cut(s) 45
MhlI GDGCHC 1 cut(s) 1283
MreI CGCCGGCG 1 cut(s) 1357
MroI TCCGGA 1 cut(s) 508
MroNI GCCGGC 1 cut(s) 1357
MroXI GAANNNNTTC 1 cut(s) 630
MseI TTAA 4 cut(s) 122, 239, 575, 588
MslI CAYNNNNRTG 1 cut(s) 1213
MspA1I CMGCKG 1 cut(s) 826
MspI CCGG 3 cut(s) 509, 1283, 1358
MspR9I CCNGG 6 cut(s) 224, 356, 791, 834, 1283, 1316
MunI CAATTG 2 cut(s) 21, 516
MvaI CCWGG 5 cut(s) 224, 356, 791, 834, 1316
MvnI CGCG 1 cut(s) 1335
MwoI GCNNNNNNNGC 6 cut(s) 15, 773, 782, 1043, 1238, 1367
NaeI GCCGGC 1 cut(s) 1359
NciI CCSGG 1 cut(s) 1283
NcoI CCATGG 1 cut(s) 1208
NdeI CATATG 1 cut(s) 327
NdeII GATC 4 cut(s) 45, 195, 399, 1086
NgoMIV GCCGGC 1 cut(s) 1357
NheI GCTAGC 1 cut(s) 640
NlaIII CATG 7 cut(s) 147, 190, 263, 818, 1197, 1212, 1325
NlaIV GGNNCC 2 cut(s) 265, 831
NmuCI GTSAC 4 cut(s) 182, 215, 986, 994
NsbI TGCGCA 1 cut(s) 1240
NspI RCATGY 1 cut(s) 190
PaeR7I CTCGAG 1 cut(s) 771
PdiI GCCGGC 1 cut(s) 1359
PdmI GAANNNNTTC 1 cut(s) 630
PfeI GAWTC 5 cut(s) 134, 148, 1091, 1133, 1152
PflMI CCANNNNNTGG 2 cut(s) 164, 497
PkrI GCNGC 4 cut(s) 787, 1183, 1243, 1305
PshBI ATTAAT 2 cut(s) 239, 588
Psp6I CCWGG 5 cut(s) 222, 354, 789, 832, 1314
PspFI CCCAGC 1 cut(s) 1370
PspGI CCWGG 5 cut(s) 222, 354, 789, 832, 1314
PspN4I GGNNCC 2 cut(s) 265, 831
PspPI GGNCC 3 cut(s) 246, 647, 1318
PsuI RGATCY 1 cut(s) 45
PvuII CAGCTG 1 cut(s) 826
RsaI GTAC 2 cut(s) 853, 1067
RsaNI GTAC 2 cut(s) 852, 1066
RseI CAYNNNNRTG 1 cut(s) 1213
SaqAI TTAA 4 cut(s) 122, 239, 575, 588
SatI GCNGC 4 cut(s) 786, 1182, 1242, 1304
Sau3AI GATC 4 cut(s) 45, 195, 399, 1086
Sau96I GGNCC 3 cut(s) 246, 647, 1318
ScrFI CCNGG 6 cut(s) 224, 356, 791, 834, 1283, 1316
SduI GDGCHC 1 cut(s) 1283
SexAI ACCWGGT 1 cut(s) 354
SfaNI GCATC 2 cut(s) 192, 776
SfcI CTRYAG 1 cut(s) 1382
Sfr274I CTCGAG 1 cut(s) 771
SgrAI CRCCGGYG 1 cut(s) 1357
SinI GGWCC 1 cut(s) 1318
SlaI CTCGAG 1 cut(s) 771
SmiMI CAYNNNNRTG 1 cut(s) 1213
SmlI CTYRAG 2 cut(s) 635, 771
SmoI CTYRAG 2 cut(s) 635, 771
SsiI CCGC 3 cut(s) 249, 1304, 1355
SspMI CTAG 3 cut(s) 503, 641, 1109
StyD4I CCNGG 6 cut(s) 222, 354, 789, 832, 1281, 1314
StyI CCWWGG 1 cut(s) 1208
TaaI ACNGT 4 cut(s) 274, 992, 1127, 1383
TaiI ACGT 2 cut(s) 967, 1280
TaqI TCGA 4 cut(s) 772, 1089, 1171, 1177
TatI WGTACW 1 cut(s) 1065
TauI GCSGC 1 cut(s) 1306
TfiI GAWTC 5 cut(s) 134, 148, 1091, 1133, 1152
Tru1I TTAA 4 cut(s) 122, 239, 575, 588
Tru9I TTAA 4 cut(s) 122, 239, 575, 588
TscAI CASTG 3 cut(s) 220, 277, 997
TseFI GTSAC 4 cut(s) 182, 215, 986, 994
TseI GCWGC 3 cut(s) 785, 1181, 1241
Tsp45I GTSAC 4 cut(s) 182, 215, 986, 994
TspDTI ATGAA 2 cut(s) 561, 682
TspGWI ACGGA 2 cut(s) 62, 1020
TspRI CASTG 3 cut(s) 220, 277, 997
Van91I CCANNNNNTGG 2 cut(s) 164, 497
VpaK11BI GGWCC 1 cut(s) 1318
VspI ATTAAT 2 cut(s) 239, 588
XapI RAATTY 2 cut(s) 630, 1173
XceI RCATGY 1 cut(s) 190
XhoI CTCGAG 1 cut(s) 771
XmnI GAANNNNTTC 1 cut(s) 630
XspI CTAG 3 cut(s) 503, 641, 1109
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.