Rorug07G0145000

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000093
Physical Location & Seq
Reverse (-)
11429665 .. 11433156
3492 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0145000.1

Sequence Viewer

Length: 2274 bp
ATGGAACAATTCCGGCGTATCGGAGAGGTTTTGGGGAGTATGAAGGCACTGATGGTCTTACAAGATGGTATCAAGATCAATCAAGGGCAGTGCTGTTTATTGCTTGATATCTTGACTTTGGCATTTGAGACAATTGGGGAGGAGATCAAGCTGAACCTGAAATTGGAGGAGAAAAAGACCAAATGGAAGGGCCTAGATGAACCTCTGAGGGAGCTCTACACAGTTTTCAGAGAAAGCGAGATTTACATCAGAAGCTGCATGGATGCCAAAGACTGGTGGGGCAAAGCAGTCATCCTCCATCAGAACAAGGACTGTGTCGAATTTTACGTACATAATTTGTTCTGCTACTTCTCGGCTGTCATTGAGGCAATCGAGAACGCTGGAGAGATTGCGGGGCTGGACCAGGATGAGATGCAGAAGAAGAGGATTGTGCTTAAGAGAAAGTATGATAAGGATTGGAATGACCCGACACTTTTCCAGTGGAGATTTGGGAAGCAGTATTTGGTCCCGAAGACGATGTGCAAAAGGTTGGAGAGTGCTTGGAGGGAAGATAGATGGCGGCTCATTGAAGCACTCAAGAAGAAGAAATTAGCTGTTGGTTTGACAAAGAATGAGCAGCAGCTCGGAGACTTGCTGCTTAAGAAACTACACGGGGCAGAGTTTTTGAATGGGAAACTGTTTCCGAGCTCAATTTTATTAGGAGCTAAGGATTACAACATTAAGCGGCGGTTAGGAAATGGACGGCAGTACAAGGAAATCCACTGGTTGGGGCACAACTTTGCCATGAGACACTTCTTTGGGGAACTTGAACCGTTCAGTTCTGAGATTTCCACTCTCCTTTCACTCTCCCACCCCAGTGTACTGCAATACCTTTGCGGGTTTTATGATGAAGATAAGAAGGAATGCTTCCTTGTTATGGAGTTGATGAGCAAGGATCTCCGCTGCTACATGAAGGAGAATTGCGGCGCAAGAAGGCAGATCTTGTTCTCTCTCCCAGTGGTGGTTGATATCATGCTTCAGATTGCAAGAGGCATGGAGTATCTCCACTCCAGAAAGATCTACCATGGTGACTTGAACCCTTTCAATATATTTCTCAAGGCAAGGAGCTCCACAGAAGGTTTCTTTCAAGCAAAAGTCTCCGGTTTTGGTTTGACATCTGCCCAAAAGAAACCTACTTGCCGAAACTCACAGCAACAGCAGCAGAAGAAACATGAAATCGACCCTTTGATTTGGTGTGCCCCGGAAGTCCTAGCTGAGCAAGAACAATCAGGAAATACCTTTGTCCATTCGAAATTCACAGAGAAAGCAGACGTGTACAGCTTTGGGATGCTTTGCTTTGAGCTCTTGACTGGGAAGATCCCTTTTGAAGATTCACATCTCCAAGGGGACAAGATGAGTCACACTATAAGAGCAGGAGGGAGGCCTCTTTTTCCATTCCCTTCACCAAAGTACCTTGTCAATTTAACCAAGAGGTGCTGGCACTCTGACCCATCTCAGCGCCTGAGTTTCTCATCCATTTGCAGGATCTTACGCTACATAAAGAAATTCCTGGCCTTGAACCCTGATGTTGATCAGCCACCAATACTGCAATCCCCTCCCACGGACTTTTGTGAAATAGAGACATGGTTCCAGAAGCATTACAAGGCAATGGGGCATGCTGATGCAGCCTCCATCTCACAAATTCCGTTCCAAATGTTTTCTTATAGACTTGGAGAGATGGACAAGACTCCTGGCTTGATCAGGATCAAGAGTTTGGATTCTGTGAGTGAAACAGCTTCGATGTTTAAGGCTGAAGAAGAAGCCACTCCAGTGAATGACAGTCTCACCGTTATAGATGATACAAGGTCTTTTTTCTCTGATACGAGGTCACTTTATGATGTGAGATCAGTTTTTTCCGAGGCGCCAATGAAGAAAACTCTCAGTGCAAAGAAACGTTCAGAATTGAGGGGCAGAAAAGCCTCAGGTCCTTCACAAGCACCAACAACATCAAGAATTTCCTTGCCCAAGCTTCCGACACCAAAGCTCTCGTCGCCAAAACTTCAGTACTCAAAACTCCCACCGTCGAAAGTTTCTATGCCAAAAAGTTCATTTGGTCGCAGTTCAATGACTAACAAGACCAGTCCACCACTGAGTTGTATAAGCTCCAGGAACTCCATGAGTATGAGTATGAGCCCAAGGCATCCTATGACTATGAGCCCAAGGCATCCTATGAGTGCGACTCGAGGCAATAGCTGCCGACCGAGAGGTCATGTCTCGGATTCCGATTTACATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04144 map04144
Pfam Domains
Protein Families
RVT_3 zf-RVT

Protein Analysis

757

Amino Acids

86.75

Weight (kDa)

9.29

Isoelectric Point (pI)

59.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1221 PF06760 21 - 234 1.9e-101 Protein of unknown function (DUF1221)
PK_Tyr_Ser-Thr PF07714 270 - 509 1.4e-38 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 272 - 507 1.1e-30 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000093)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G09490
fragaria_vesca FvH4_1g23791 FvH4_2g01641 FvH4_2g04612 FvH4_2g06831 FvH4_2g07841 FvH4_2g13581 FvH4_2g27220 FvH4_2g30621 FvH4_2g34753 FvH4_3g10392 FvH4_3g24291 FvH4_3g25030 FvH4_3g29361 FvH4_3g31372 FvH4_3g32402 FvH4_3g43651 FvH4_4g03830 FvH4_4g05481 FvH4_4g20431 FvH4_4g21421 FvH4_4g25931 FvH4_5g08801 FvH4_5g21021 FvH4_5g26254 FvH4_5g30931 FvH4_5g31281 FvH4_5g33581 FvH4_5g35622 FvH4_6g02100 FvH4_6g07963 FvH4_6g11620 FvH4_6g16031 FvH4_6g19041 FvH4_6g24211 FvH4_6g24271 FvH4_6g30670 FvH4_6g49540 FvH4_7g25914
malus_domestica MD03G1245200.v1.1 MD04G1168000.v1.1 MD09G1242600.v1.1 MD15G1334000.v1.1 MD17G1165700.v1.1
prunus_persica Prupe.1G073500_v2.0.a1 Prupe.1G283700_v2.0.a1 Prupe.1G524100_v2.0.a1 Prupe.2G022700_v2.0.a1 Prupe.2G022800_v2.0.a1 Prupe.2G022800_v2.0.a1 Prupe.2G044300_v2.0.a1 Prupe.2G048800_v2.0.a1 Prupe.2G092000_v2.0.a1 Prupe.2G216500_v2.0.a1 Prupe.2G216600_v2.0.a1 Prupe.2G216600_v2.0.a1 Prupe.3G103400_v2.0.a1 Prupe.3G143300_v2.0.a1 Prupe.3G190000_v2.0.a1 Prupe.3G219800_v2.0.a1 Prupe.4G177800_v2.0.a1 Prupe.4G261300_v2.0.a1 Prupe.5G044600_v2.0.a1 Prupe.5G067400_v2.0.a1 Prupe.7G083900_v2.0.a1 Prupe.7G120900_v2.0.a1 Prupe.8G032200_v2.0.a1 Prupe.8G036100_v2.0.a1 Prupe.8G042700_v2.0.a1
pyrus_communis pycom01g21710 pycom02g19770 pycom03g05120 pycom05g01370 pycom05g08780 pycom05g10120 pycom07g01370 pycom07g05930 pycom08g15760 pycom08g18090 pycom08g21060 pycom09g03880 pycom10g03870 pycom13g22240 pycom16g05120 pycom16g17170 pycom17g12180 pycom17g16290 pycom17g21230 pycom17g24990 pycom215g00100
rosa_chinensis RchiOBHm_Chr1g0323031 RchiOBHm_Chr1g0324391 RchiOBHm_Chr1g0326401 RchiOBHm_Chr1g0327811 RchiOBHm_Chr1g0332521 RchiOBHm_Chr1g0336501 RchiOBHm_Chr1g0346021 RchiOBHm_Chr1g0347191 RchiOBHm_Chr1g0367181 RchiOBHm_Chr2g0089441 RchiOBHm_Chr2g0115441 RchiOBHm_Chr3g0490691 RchiOBHm_Chr4g0395251 RchiOBHm_Chr4g0398081 RchiOBHm_Chr4g0409451 RchiOBHm_Chr4g0413041 RchiOBHm_Chr4g0415471 RchiOBHm_Chr4g0420961 RchiOBHm_Chr5g0040301 RchiOBHm_Chr5g0070651 RchiOBHm_Chr6g0263011 RchiOBHm_Chr6g0270721 RchiOBHm_Chr6g0277111 RchiOBHm_Chr7g0179771 RchiOBHm_Chr7g0223051 RchiOBHm_Chr7g0225031 RchiOBHm_Chr7g0225091
rosa_laevigata RLG00000001668 RLG00000001672 RLG00000001676 RLG00000007762 RLG00000008994 RLG00000011117 RLG00000013729 RLG00000013839 RLG00000014759 RLG00000016638 RLG00000018535 RLG00000018614 RLG00000018646 RLG00000020679 RLG00000023337 RLG00000029348 RLG00000035891 RLG00000035912
rosa_multiflora Rmu_co8152500.1_g000001 Rmu_co8203314.1_g000001 Rmu_co8383183.1_g000001 Rmu_sc0000293.1_g000033 Rmu_sc0000367.1_g000226 Rmu_sc0000512.1_g000023 Rmu_sc0000594.1_g000059 Rmu_sc0000654.1_g000022 Rmu_sc0000654.1_g000047 Rmu_sc0000706.1_g000037 Rmu_sc0001348.1_g000008 Rmu_sc0001385.1_g000024 Rmu_sc0001405.1_g000002 Rmu_sc0001521.1_g000048 Rmu_sc0001932.1_g000008 Rmu_sc0001932.1_g000009 Rmu_sc0002535.1_g000011 Rmu_sc0002908.1_g000019 Rmu_sc0003709.1_g000004 Rmu_sc0003882.1_g000054 Rmu_sc0004035.1_g000007 Rmu_sc0004041.1_g000007 Rmu_sc0004288.1_g000011 Rmu_sc0004569.1_g000004 Rmu_sc0004677.1_g000016 Rmu_sc0004834.1_g000010 Rmu_sc0005193.1_g000008 Rmu_sc0005354.1_g000009 Rmu_sc0006514.1_g000021 Rmu_sc0006691.1_g000001 Rmu_sc0006888.1_g000021 Rmu_sc0006889.1_g000013 Rmu_sc0008096.1_g000017 Rmu_sc0008378.1_g000003 Rmu_sc0009127.1_g000005 Rmu_sc0009191.1_g000016 Rmu_sc0009687.1_g000018 Rmu_sc0009709.1_g000005 Rmu_sc0009880.1_g000015 Rmu_sc0011710.1_g000001 Rmu_sc0012615.1_g000004 Rmu_sc0016091.1_g000002 Rmu_sc0022339.1_g000006 Rmu_sc0026537.1_g000002 Rmu_sc0027689.1_g000002 Rmu_sc0036222.1_g000001 Rmu_sc0040890.1_g000001 Rmu_ssc0000148.1_g000006 Rmu_ssc0000151.1_g000017 Rmu_ssc0000404.1_g000018 Rmu_ssc0000449.1_g000009
rosa_roxburghii Rroxscaffold_1G00017760 Rroxscaffold_1G00059150 Rroxscaffold_2G00142560 Rroxscaffold_3G00220440 Rroxscaffold_3G00231700 Rroxscaffold_3G00232400 Rroxscaffold_3G00274510 Rroxscaffold_4G00288790 Rroxscaffold_4G00305680 Rroxscaffold_4G00314880 Rroxscaffold_4G00314900 Rroxscaffold_5G00334590 Rroxscaffold_6G00394110 Rroxscaffold_6G00415860 Rroxscaffold_7G00168240 Rroxscaffold_7G00204400 Rroxscaffold_7G00207840
rosa_rugosa Rorug01G0034900 Rorug02G0079500 Rorug02G0229000 Rorug02G0229100 Rorug02G0291400 Rorug02G0298800 Rorug03G0046400 Rorug03G0064700 Rorug03G0077300 Rorug03G0199000 Rorug03G0200400 Rorug04G0205200 Rorug05G0025400 Rorug05G0127400 Rorug05G0192100 Rorug05G0453400 Rorug05G0538300 Rorug06G0035200 Rorug06G0241000 Rorug06G0268300 Rorug07G0120300 Rorug07G0145000 Rorug07G0209100 Rorug07G0240500 Rorug07G0271700
rosa_samantha Rh1AG179100 Rh1BG106900 Rh1BG163400 Rh1BG163500 Rh1BG323500 Rh2CG447900 Rh2DG503700 Rh3AG293600 Rh3CG229100 Rh3DG221500 Rh4AG106000 Rh4BG267700 Rh4CG062500 Rh4CG090100 Rh4CG114800 Rh5AG038400 Rh5BG395400 Rh5CG441700 Rh5CG572000 Rh6AG222400 Rh6AG264500 Rh6BG137400 Rh6BG225700 Rh6CG144300 Rh6DG087600 Rh6DG096000 Rh6DG362400 Rh6DG390200 Rh7AG207500 Rh7AG324700 Rh7AG388800 Rh7AG437100 Rh7BG019000 Rh7BG374600 Rh7CG028700 Rh7CG341500 Rh7CG408000 Rh7CG408300 Rh7DG354600
rosa_wichuraiana Rw0G009630 Rw0G012170 Rw4G022700 Rw5G028420 Rw5G029490 Rw6G007220 Rw6G007410 Rw6G017880 Rw7G012440 Rw7G021830 Rw7G027490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 2244
AccB1I GGYRCC 1 cut(s) 1900
AccB7I CCANNNNNTGG 2 cut(s) 273, 766
AciI CCGC 7 cut(s) 392, 559, 724, 727, 876, 940, 963
AclI AACGTT 1 cut(s) 1933
AclWI GGATC 4 cut(s) 942, 1351, 1532, 1751
AcsI RAATTY 5 cut(s) 320, 1292, 1544, 1680, 1992
AcuI CTGAAG 3 cut(s) 1001, 1812, 2024
AcyI GRCGYC 1 cut(s) 1901
AfaI GTAC 6 cut(s) 330, 749, 861, 1316, 1451, 2045
AfiI CCNNNNNNNGG 7 cut(s) 163, 273, 766, 916, 1000, 1521, 1600
AflII CTTAAG 2 cut(s) 434, 638
AflIII ACRYGT 1 cut(s) 1311
AgsI TTSAA 9 cut(s) 569, 667, 809, 1075, 1084, 1127, 1367, 1558, 2103
AjiI CACGTC 1 cut(s) 1312
AjnI CCWGG 4 cut(s) 402, 1548, 1729, 2144
AjuI GAANNNNNNNTTGG 4 cut(s) 146, 178, 485, 517
AleI CACNNNNGTG 2 cut(s) 855, 1808
Alw21I GWGCWC 4 cut(s) 216, 689, 1109, 1344
Alw26I GTCTC 7 cut(s) 122, 621, 781, 1141, 1613, 1826, 2257
AlwI GGATC 4 cut(s) 942, 1351, 1532, 1751
AlwNI CAGNNNCTG 2 cut(s) 255, 1501
Ama87I CYCGRG 1 cut(s) 2220
AoxI GGCC 3 cut(s) 190, 1421, 1551
ApeKI GCWGC 8 cut(s) 255, 616, 619, 634, 942, 1198, 1664, 2232
ApoI RAATTY 5 cut(s) 320, 1292, 1544, 1680, 1992
ArsI GACNNNNNNTTYG 2 cut(s) 2012, 2044
Asp700I GAANNNNTTC 1 cut(s) 1079
AspLEI GCGC 3 cut(s) 968, 1500, 1903
AspS9I GGNCC 4 cut(s) 190, 400, 505, 1964
AsuC2I CCSGG 1 cut(s) 1241
AsuHPI GGTGA 3 cut(s) 1079, 1434, 1816
AsuII TTCGAA 1 cut(s) 1289
AvaI CYCGRG 1 cut(s) 2220
AvaII GGWCC 3 cut(s) 400, 505, 1964
AxyI CCTNAGG 1 cut(s) 1960
BaeGI GKGCMC 2 cut(s) 774, 1240
BaeI ACNNNNGTAYC 2 cut(s) 1433, 1466
BanI GGYRCC 1 cut(s) 1900
BanII GRGCYC 6 cut(s) 216, 689, 1109, 1344, 2174, 2198
BbsI GAAGAC 1 cut(s) 518
Bbv12I GWGCWC 4 cut(s) 216, 689, 1109, 1344
BbvI GCAGC 8 cut(s) 242, 621, 628, 631, 929, 1210, 1676, 2219
BccI CCATC 7 cut(s) 46, 59, 306, 549, 1498, 1679, 1711
BceAI ACGGC 1 cut(s) 758
BciT130I CCWGG 4 cut(s) 404, 1550, 1731, 2146
BclI TGATCA 2 cut(s) 1570, 1737
BcnI CCSGG 1 cut(s) 1241
BcoDI GTCTC 7 cut(s) 122, 621, 781, 1141, 1613, 1826, 2257
BfaI CTAG 2 cut(s) 194, 1250
BfoI RGCGCY 2 cut(s) 1501, 1904
BfrI CTTAAG 2 cut(s) 434, 638
BglII AGATCT 2 cut(s) 978, 1056
BlpI GCTNAGC 1 cut(s) 1254
BmcAI AGTACT 1 cut(s) 2045
Bme1390I CCNGG 5 cut(s) 404, 1241, 1550, 1731, 2146
Bme18I GGWCC 3 cut(s) 400, 505, 1964
BmeT110I CYCGRG 1 cut(s) 2220
BmgBI CACGTC 1 cut(s) 1312
BmgT120I GGNCC 4 cut(s) 190, 400, 505, 1964
BmiI GGNNCC 3 cut(s) 507, 1628, 1902
BmrFI CCNGG 5 cut(s) 404, 1241, 1550, 1731, 2146
BmrI ACTGGG 3 cut(s) 849, 989, 1359
BmsI GCATC 6 cut(s) 253, 402, 1317, 1651, 2188, 2212
BmuI ACTGGG 3 cut(s) 849, 989, 1359
BpiI GAAGAC 1 cut(s) 518
BplI GAGNNNNNCTC 2 cut(s) 2203, 2235
BpmI CTGGAG 4 cut(s) 402, 1033, 1791, 2128
Bpu10I CCTNAGC 1 cut(s) 705
Bpu1102I GCTNAGC 1 cut(s) 1254
Bpu14I TTCGAA 1 cut(s) 1289
BpuEI CTTGAG 2 cut(s) 560, 1079
BpuMI CCSGG 1 cut(s) 1241
BsaAI YACGTR 1 cut(s) 328
BsaBI GATNNNNATC 4 cut(s) 245, 1374, 1569, 1742
BsaHI GRCGYC 1 cut(s) 1901
BsaJI CCNNGG 7 cut(s) 1063, 1239, 1381, 1599, 1896, 2174, 2198
BsaWI WCCGGW 1 cut(s) 1139
Bsc4I CCNNNNNNNGG 7 cut(s) 163, 273, 766, 916, 1000, 1521, 1600
Bse1I ACTGG 8 cut(s) 278, 478, 767, 855, 995, 1354, 1808, 2118
Bse21I CCTNAGG 1 cut(s) 1960
Bse3DI GCAATG 1 cut(s) 1653
Bse8I GATNNNNATC 4 cut(s) 245, 1374, 1569, 1742
BseBI CCWGG 4 cut(s) 404, 1550, 1731, 2146
BseDI CCNNGG 7 cut(s) 1063, 1239, 1381, 1599, 1896, 2174, 2198
BseGI GGATG 7 cut(s) 268, 291, 412, 1332, 1511, 2179, 2203
BseJI GATNNNNATC 4 cut(s) 245, 1374, 1569, 1742
BseLI CCNNNNNNNGG 7 cut(s) 163, 273, 766, 916, 1000, 1521, 1600
BseMI GCAATG 1 cut(s) 1653
BseMII CTCAG 8 cut(s) 197, 813, 1245, 1493, 1508, 1933, 1974, 2120
BseNI ACTGG 8 cut(s) 278, 478, 767, 855, 995, 1354, 1808, 2118
BseRI GAGGAG 2 cut(s) 155, 182
BseSI GKGCMC 2 cut(s) 774, 1240
BseXI GCAGC 8 cut(s) 242, 621, 628, 631, 929, 1210, 1676, 2219
Bsh1285I CGRYCG 1 cut(s) 2240
BshFI GGCC 3 cut(s) 192, 1423, 1553
BshNI GGYRCC 1 cut(s) 1900
BsiEI CGRYCG 1 cut(s) 2240
BsiHKAI GWGCWC 4 cut(s) 216, 689, 1109, 1344
BsiHKCI CYCGRG 1 cut(s) 2220
BsiSI CCGG 3 cut(s) 13, 1140, 1241
BslFI GGGAC 2 cut(s) 491, 1400
BslI CCNNNNNNNGG 7 cut(s) 163, 273, 766, 916, 1000, 1521, 1600
BsmAI GTCTC 7 cut(s) 122, 621, 781, 1141, 1613, 1826, 2257
BsmFI GGGAC 2 cut(s) 491, 1400
BsmI GAATGC 1 cut(s) 908
BsnI GGCC 3 cut(s) 192, 1423, 1553
BsoBI CYCGRG 1 cut(s) 2220
Bsp119I TTCGAA 1 cut(s) 1289
Bsp1286I GDGCHC 8 cut(s) 216, 689, 774, 1109, 1240, 1344, 2174, 2198
Bsp1407I TGTACA 1 cut(s) 1314
Bsp1720I GCTNAGC 1 cut(s) 1254
Bsp19I CCATGG 1 cut(s) 1063
BspACI CCGC 7 cut(s) 392, 559, 724, 727, 876, 940, 963
BspANI GGCC 3 cut(s) 192, 1423, 1553
BspCNI CTCAG 8 cut(s) 198, 814, 1246, 1494, 1507, 1932, 1973, 2121
BspLI GGNNCC 3 cut(s) 507, 1628, 1902
BspPI GGATC 4 cut(s) 942, 1351, 1532, 1751
BspT104I TTCGAA 1 cut(s) 1289
BspT107I GGYRCC 1 cut(s) 1900
BspTI CTTAAG 2 cut(s) 434, 638
BsrDI GCAATG 1 cut(s) 1653
BsrGI TGTACA 1 cut(s) 1314
BsrI ACTGG 8 cut(s) 278, 478, 767, 855, 995, 1354, 1808, 2118
BssECI CCNNGG 7 cut(s) 1063, 1239, 1381, 1599, 1896, 2174, 2198
BssNI GRCGYC 1 cut(s) 1901
BssT1I CCWWGG 4 cut(s) 1063, 1381, 2174, 2198
Bst2UI CCWGG 4 cut(s) 404, 1550, 1731, 2146
Bst4CI ACNGT 7 cut(s) 223, 314, 678, 813, 1820, 1828, 2061
Bst6I CTCTTC 1 cut(s) 416
BstACI GRCGYC 1 cut(s) 1901
BstAFI CTTAAG 2 cut(s) 434, 638
BstAPI GCANNNNNTGC 1 cut(s) 2232
BstAUI TGTACA 1 cut(s) 1314
BstBAI YACGTR 1 cut(s) 328
BstBI TTCGAA 1 cut(s) 1289
BstC8I GCNNGC 2 cut(s) 1478, 1656
BstDEI CTNAG 9 cut(s) 206, 705, 822, 1254, 1494, 1502, 1919, 1960, 2129
BstDSI CCRYGG 2 cut(s) 1063, 1599
BstF5I GGATG 7 cut(s) 268, 291, 412, 1332, 1511, 2179, 2203
BstH2I RGCGCY 2 cut(s) 1501, 1904
BstHHI GCGC 3 cut(s) 968, 1500, 1903
BstMAI GTCTC 7 cut(s) 122, 621, 781, 1141, 1613, 1826, 2257
BstMCI CGRYCG 1 cut(s) 2240
BstMWI GCNNNNNNNGC 4 cut(s) 1198, 1664, 2029, 2232
BstNI CCWGG 4 cut(s) 404, 1550, 1731, 2146
BstNSI RCATGY 1 cut(s) 1658
BstSCI CCNGG 5 cut(s) 402, 1239, 1548, 1729, 2144
BstSLI GKGCMC 2 cut(s) 774, 1240
BstSNI TACGTA 1 cut(s) 328
BstV1I GCAGC 8 cut(s) 242, 621, 628, 631, 929, 1210, 1676, 2219
BstV2I GAAGAC 1 cut(s) 518
BstX2I RGATCY 5 cut(s) 934, 978, 1056, 1356, 1524
BstYI RGATCY 5 cut(s) 934, 978, 1056, 1356, 1524
Bsu36I CCTNAGG 1 cut(s) 1960
BsuRI GGCC 3 cut(s) 192, 1423, 1553
BtgI CCRYGG 2 cut(s) 1063, 1599
BtrI CACGTC 1 cut(s) 1312
BtsCI GGATG 7 cut(s) 268, 291, 412, 1332, 1511, 2179, 2203
BtsI GCAGTG 1 cut(s) 95
BtsIMutI CAGTG 9 cut(s) 47, 95, 485, 760, 862, 1002, 1815, 1927, 2126
Cac8I GCNNGC 2 cut(s) 1478, 1656
CaiI CAGNNNCTG 2 cut(s) 255, 1501
CfoI GCGC 3 cut(s) 968, 1500, 1903
Cfr13I GGNCC 4 cut(s) 190, 400, 505, 1964
Csp6I GTAC 6 cut(s) 329, 748, 860, 1315, 1450, 2044
CviQI GTAC 6 cut(s) 329, 748, 860, 1315, 1450, 2044
DdeI CTNAG 9 cut(s) 206, 705, 822, 1254, 1494, 1502, 1919, 1960, 2129
DinI GGCGCC 1 cut(s) 1902
DrdI GACNNNNNNGTC 1 cut(s) 2244
DseDI GACNNNNNNGTC 1 cut(s) 2244
Eam1104I CTCTTC 1 cut(s) 416
EarI CTCTTC 1 cut(s) 416
Ecl136II GAGCTC 4 cut(s) 214, 687, 1107, 1342
Eco105I TACGTA 1 cut(s) 328
Eco130I CCWWGG 4 cut(s) 1063, 1381, 2174, 2198
Eco147I AGGCCT 1 cut(s) 1423
Eco24I GRGCYC 6 cut(s) 216, 689, 1109, 1344, 2174, 2198
Eco32I GATATC 2 cut(s) 109, 1009
Eco47I GGWCC 3 cut(s) 400, 505, 1964
Eco53kI GAGCTC 4 cut(s) 214, 687, 1107, 1342
Eco57I CTGAAG 3 cut(s) 1001, 1812, 2024
Eco81I CCTNAGG 1 cut(s) 1960
Eco88I CYCGRG 1 cut(s) 2220
EcoICRI GAGCTC 4 cut(s) 214, 687, 1107, 1342
EcoO109I RGGNCCY 2 cut(s) 190, 1964
EcoRII CCWGG 4 cut(s) 402, 1548, 1729, 2144
EcoRV GATATC 2 cut(s) 109, 1009
EcoT14I CCWWGG 4 cut(s) 1063, 1381, 2174, 2198
EcoT38I GRGCYC 6 cut(s) 216, 689, 1109, 1344, 2174, 2198
EgeI GGCGCC 1 cut(s) 1902
EheI GGCGCC 1 cut(s) 1902
ErhI CCWWGG 4 cut(s) 1063, 1381, 2174, 2198
FalI AAGNNNNNCTT 2 cut(s) 890, 922
FaqI GGGAC 2 cut(s) 491, 1400
FauI CCCGC 2 cut(s) 385, 869
FbaI TGATCA 2 cut(s) 1570, 1737
FokI GGATG 7 cut(s) 275, 278, 419, 1339, 1498, 2166, 2190
FriOI GRGCYC 6 cut(s) 216, 689, 1109, 1344, 2174, 2198
FspBI CTAG 2 cut(s) 194, 1250
GlaI GCGC 3 cut(s) 967, 1499, 1902
GsuI CTGGAG 4 cut(s) 402, 1033, 1791, 2128
HaeII RGCGCY 2 cut(s) 1501, 1904
HaeIII GGCC 3 cut(s) 192, 1423, 1553
HapII CCGG 3 cut(s) 13, 1140, 1241
HhaI GCGC 3 cut(s) 968, 1500, 1903
Hin1I GRCGYC 1 cut(s) 1901
Hin6I GCGC 3 cut(s) 966, 1498, 1901
HinP1I GCGC 3 cut(s) 966, 1498, 1901
HindIII AAGCTT 1 cut(s) 2006
HinfI GANTC 6 cut(s) 1370, 1396, 1726, 1757, 2218, 2258
HpaII CCGG 3 cut(s) 13, 1140, 1241
HphI GGTGA 3 cut(s) 1079, 1434, 1816
Hpy166II GTNNAC 3 cut(s) 860, 1315, 2123
Hpy8I GTNNAC 3 cut(s) 860, 1315, 2123
Hpy99I CGWCG 2 cut(s) 2032, 2065
HpyAV CCTTC 8 cut(s) 37, 181, 892, 946, 966, 1109, 1449, 1977
HpyCH4III ACNGT 7 cut(s) 223, 314, 678, 813, 1820, 1828, 2061
HpyCH4IV ACGT 3 cut(s) 327, 1311, 1933
HpyCH4V TGCA 9 cut(s) 258, 415, 522, 865, 1025, 1521, 1588, 1664, 1925
HpyF10VI GCNNNNNNNGC 4 cut(s) 1198, 1664, 2029, 2232
HpyF3I CTNAG 9 cut(s) 206, 705, 822, 1254, 1494, 1502, 1919, 1960, 2129
HpySE526I ACGT 3 cut(s) 327, 1311, 1933
Hsp92I GRCGYC 1 cut(s) 1901
HspAI GCGC 3 cut(s) 966, 1498, 1901
KasI GGCGCC 1 cut(s) 1900
Ksp22I TGATCA 2 cut(s) 1570, 1737
LmnI GCTCC 5 cut(s) 211, 701, 1104, 1112, 2147
Lsp1109I GCAGC 8 cut(s) 242, 621, 628, 631, 929, 1210, 1676, 2219
LweI GCATC 6 cut(s) 253, 402, 1317, 1651, 2188, 2212
MaeI CTAG 2 cut(s) 194, 1250
MaeII ACGT 3 cut(s) 327, 1311, 1933
MaeIII GTNAC 3 cut(s) 1067, 1397, 1866
MfeI CAATTG 1 cut(s) 132
MflI RGATCY 5 cut(s) 934, 978, 1056, 1356, 1524
MhlI GDGCHC 8 cut(s) 216, 689, 774, 1109, 1240, 1344, 2174, 2198
Mly113I GGCGCC 1 cut(s) 1901
MlyI GAGTC 3 cut(s) 1405, 1720, 2212
MmeI TCCRAC 2 cut(s) 510, 2036
MroXI GAANNNNTTC 1 cut(s) 1079
MseI TTAA 5 cut(s) 435, 639, 720, 1463, 1785
MslI CAYNNNNRTG 4 cut(s) 855, 1659, 1808, 2159
MspA1I CMGCKG 1 cut(s) 942
MspCI CTTAAG 2 cut(s) 434, 638
MspI CCGG 3 cut(s) 13, 1140, 1241
MspR9I CCNGG 5 cut(s) 404, 1241, 1550, 1731, 2146
MunI CAATTG 1 cut(s) 132
Mva1269I GAATGC 1 cut(s) 908
MvaI CCWGG 4 cut(s) 404, 1550, 1731, 2146
MwoI GCNNNNNNNGC 4 cut(s) 1198, 1664, 2029, 2232
NarI GGCGCC 1 cut(s) 1901
NciI CCSGG 1 cut(s) 1241
NcoI CCATGG 1 cut(s) 1063
NlaIV GGNNCC 3 cut(s) 507, 1628, 1902
NmeAIII GCCGAG 1 cut(s) 332
NmuCI GTSAC 3 cut(s) 1067, 1397, 1866
NspI RCATGY 1 cut(s) 1658
NspV TTCGAA 1 cut(s) 1289
OliI CACNNNNGTG 2 cut(s) 855, 1808
PaeI GCATGC 1 cut(s) 1658
PaeR7I CTCGAG 1 cut(s) 2220
PceI AGGCCT 1 cut(s) 1423
PcsI WCGNNNNNNNCGW 1 cut(s) 324
PctI GAATGC 1 cut(s) 908
PdmI GAANNNNTTC 1 cut(s) 1079
PfeI GAWTC 3 cut(s) 1370, 1757, 2258
PflFI GACNNNGTC 1 cut(s) 314
PflMI CCANNNNNTGG 2 cut(s) 273, 766
PfoI TCCNGGA 1 cut(s) 2144
PleI GAGTC 3 cut(s) 1404, 1720, 2212
PluTI GGCGCC 1 cut(s) 1904
PpsI GAGTC 3 cut(s) 1404, 1720, 2212
Ppu21I YACGTR 1 cut(s) 328
PpuMI RGGWCCY 1 cut(s) 1964
Psp124BI GAGCTC 4 cut(s) 216, 689, 1109, 1344
Psp1406I AACGTT 1 cut(s) 1933
Psp5II RGGWCCY 1 cut(s) 1964
Psp6I CCWGG 4 cut(s) 402, 1548, 1729, 2144
PspGI CCWGG 4 cut(s) 402, 1548, 1729, 2144
PspN4I GGNNCC 3 cut(s) 507, 1628, 1902
PspPI GGNCC 4 cut(s) 190, 400, 505, 1964
PspPPI RGGWCCY 1 cut(s) 1964
PspXI VCTCGAGB 1 cut(s) 2220
PstNI CAGNNNCTG 2 cut(s) 255, 1501
PsuI RGATCY 5 cut(s) 934, 978, 1056, 1356, 1524
PsyI GACNNNGTC 1 cut(s) 314
RsaI GTAC 6 cut(s) 330, 749, 861, 1316, 1451, 2045
RsaNI GTAC 6 cut(s) 329, 748, 860, 1315, 1450, 2044
RseI CAYNNNNRTG 4 cut(s) 855, 1659, 1808, 2159
SacI GAGCTC 4 cut(s) 216, 689, 1109, 1344
SaqAI TTAA 5 cut(s) 435, 639, 720, 1463, 1785
Sau96I GGNCC 4 cut(s) 190, 400, 505, 1964
ScaI AGTACT 1 cut(s) 2045
SchI GAGTC 3 cut(s) 1405, 1720, 2212
ScrFI CCNGG 5 cut(s) 404, 1241, 1550, 1731, 2146
SduI GDGCHC 8 cut(s) 216, 689, 774, 1109, 1240, 1344, 2174, 2198
SfaNI GCATC 6 cut(s) 253, 402, 1317, 1651, 2188, 2212
SfoI GGCGCC 1 cut(s) 1902
Sfr274I CTCGAG 1 cut(s) 2220
SfuI TTCGAA 1 cut(s) 1289
SinI GGWCC 3 cut(s) 400, 505, 1964
SlaI CTCGAG 1 cut(s) 2220
SmiMI CAYNNNNRTG 4 cut(s) 855, 1659, 1808, 2159
SmlI CTYRAG 5 cut(s) 434, 575, 638, 1094, 2220
SmoI CTYRAG 5 cut(s) 434, 575, 638, 1094, 2220
SnaBI TACGTA 1 cut(s) 328
SphI GCATGC 1 cut(s) 1658
SseBI AGGCCT 1 cut(s) 1423
SsiI CCGC 7 cut(s) 392, 559, 724, 727, 876, 940, 963
SspDI GGCGCC 1 cut(s) 1900
SspMI CTAG 2 cut(s) 194, 1250
SstI GAGCTC 4 cut(s) 216, 689, 1109, 1344
StuI AGGCCT 1 cut(s) 1423
StyD4I CCNGG 5 cut(s) 402, 1239, 1548, 1729, 2144
StyI CCWWGG 4 cut(s) 1063, 1381, 2174, 2198
TaaI ACNGT 7 cut(s) 223, 314, 678, 813, 1820, 1828, 2061
TaiI ACGT 3 cut(s) 330, 1314, 1936
TaqI TCGA 7 cut(s) 318, 372, 1218, 1289, 1778, 2063, 2221
TaqII GACCGA 1 cut(s) 2254
TatI WGTACW 4 cut(s) 747, 859, 1314, 2043
TauI GCSGC 3 cut(s) 562, 727, 966
TfiI GAWTC 3 cut(s) 1370, 1757, 2258
Tru1I TTAA 5 cut(s) 435, 639, 720, 1463, 1785
Tru9I TTAA 5 cut(s) 435, 639, 720, 1463, 1785
TscAI CASTG 9 cut(s) 54, 95, 485, 767, 862, 1002, 1815, 1927, 2133
TseFI GTSAC 3 cut(s) 1067, 1397, 1866
TseI GCWGC 8 cut(s) 255, 616, 619, 634, 942, 1198, 1664, 2232
Tsp45I GTSAC 3 cut(s) 1067, 1397, 1866
TspDTI ATGAA 7 cut(s) 56, 213, 903, 965, 1227, 1922, 2076
TspGWI ACGGA 2 cut(s) 1616, 1674
TspRI CASTG 9 cut(s) 54, 95, 485, 767, 862, 1002, 1815, 1927, 2133
Tth111I GACNNNGTC 1 cut(s) 314
Van91I CCANNNNNTGG 2 cut(s) 273, 766
Vha464I CTTAAG 2 cut(s) 434, 638
VpaK11BI GGWCC 3 cut(s) 400, 505, 1964
XapI RAATTY 5 cut(s) 320, 1292, 1544, 1680, 1992
XceI RCATGY 1 cut(s) 1658
XcmI CCANNNNNNNNNTGG 1 cut(s) 485
XhoI CTCGAG 1 cut(s) 2220
XmnI GAANNNNTTC 1 cut(s) 1079
XspI CTAG 2 cut(s) 194, 1250
ZrmI AGTACT 1 cut(s) 2045
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.