ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 510 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 868 |
| AciI | CCGC | 2 cut(s) | 527, 662 |
| AclWI | GGATC | 1 cut(s) | 205 |
| AcsI | RAATTY | 2 cut(s) | 37, 589 |
| AcuI | CTGAAG | 1 cut(s) | 663 |
| AfaI | GTAC | 2 cut(s) | 403, 550 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 846, 868, 888 |
| AgsI | TTSAA | 6 cut(s) | 91, 143, 456, 710, 733, 902 |
| AjnI | CCWGG | 1 cut(s) | 582 |
| AluBI | AGCT | 3 cut(s) | 302, 647, 685 |
| AluI | AGCT | 3 cut(s) | 302, 647, 685 |
| Alw21I | GWGCWC | 1 cut(s) | 173 |
| Alw26I | GTCTC | 1 cut(s) | 481 |
| AlwI | GGATC | 1 cut(s) | 205 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 473 |
| AoxI | GGCC | 1 cut(s) | 606 |
| ApeKI | GCWGC | 2 cut(s) | 682, 857 |
| ApoI | RAATTY | 2 cut(s) | 37, 589 |
| AseI | ATTAAT | 1 cut(s) | 779 |
| AspLEI | GCGC | 1 cut(s) | 857 |
| AsuHPI | GGTGA | 1 cut(s) | 472 |
| BauI | CACGAG | 1 cut(s) | 172 |
| BbsI | GAAGAC | 1 cut(s) | 890 |
| Bbv12I | GWGCWC | 1 cut(s) | 173 |
| BbvI | GCAGC | 2 cut(s) | 694, 844 |
| BciT130I | CCWGG | 1 cut(s) | 584 |
| BciVI | GTATCC | 1 cut(s) | 10 |
| BclI | TGATCA | 1 cut(s) | 616 |
| BcoDI | GTCTC | 1 cut(s) | 481 |
| BfaI | CTAG | 2 cut(s) | 68, 596 |
| BfmI | CTRYAG | 2 cut(s) | 133, 428 |
| BfuI | GTATCC | 1 cut(s) | 10 |
| BisI | GCNGC | 3 cut(s) | 528, 683, 858 |
| BlsI | GCNGC | 3 cut(s) | 529, 684, 859 |
| Bme1390I | CCNGG | 1 cut(s) | 584 |
| BmrFI | CCNGG | 1 cut(s) | 584 |
| BmsI | GCATC | 3 cut(s) | 52, 225, 395 |
| BoxI | GACNNNNGTC | 1 cut(s) | 675 |
| BpiI | GAAGAC | 1 cut(s) | 890 |
| BpuEI | CTTGAG | 2 cut(s) | 60, 705 |
| Bsa29I | ATCGAT | 1 cut(s) | 396 |
| BsaI | GGTCTC | 1 cut(s) | 481 |
| BsaJI | CCNNGG | 2 cut(s) | 603, 862 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 94, 124, 793, 823 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 846, 868, 888 |
| Bse118I | RCCGGY | 1 cut(s) | 815 |
| BseBI | CCWGG | 1 cut(s) | 584 |
| BseCI | ATCGAT | 1 cut(s) | 396 |
| BseDI | CCNNGG | 2 cut(s) | 603, 862 |
| BseGI | GGATG | 1 cut(s) | 266 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 846, 868, 888 |
| BseMII | CTCAG | 1 cut(s) | 878 |
| BseRI | GAGGAG | 1 cut(s) | 192 |
| BseXI | GCAGC | 2 cut(s) | 694, 844 |
| Bsh1285I | CGRYCG | 1 cut(s) | 400 |
| BshFI | GGCC | 1 cut(s) | 608 |
| BshVI | ATCGAT | 1 cut(s) | 396 |
| BsiEI | CGRYCG | 1 cut(s) | 400 |
| BsiHKAI | GWGCWC | 1 cut(s) | 173 |
| BsiSI | CCGG | 2 cut(s) | 799, 816 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 846, 868, 888 |
| BsmAI | GTCTC | 1 cut(s) | 481 |
| BsnI | GGCC | 1 cut(s) | 608 |
| Bso31I | GGTCTC | 1 cut(s) | 481 |
| Bsp1286I | GDGCHC | 1 cut(s) | 173 |
| Bsp143I | GATC | 4 cut(s) | 197, 397, 616, 636 |
| Bsp19I | CCATGG | 1 cut(s) | 862 |
| BspACI | CCGC | 2 cut(s) | 527, 662 |
| BspANI | GGCC | 1 cut(s) | 608 |
| BspCNI | CTCAG | 1 cut(s) | 879 |
| BspDI | ATCGAT | 1 cut(s) | 396 |
| BspMAI | CTGCAG | 2 cut(s) | 137, 432 |
| BspPI | GGATC | 1 cut(s) | 205 |
| BspTNI | GGTCTC | 1 cut(s) | 481 |
| BsrFI | RCCGGY | 1 cut(s) | 815 |
| BssAI | RCCGGY | 1 cut(s) | 815 |
| BssECI | CCNNGG | 2 cut(s) | 603, 862 |
| BssMI | GATC | 4 cut(s) | 197, 397, 616, 636 |
| BssSI | CACGAG | 1 cut(s) | 172 |
| BssT1I | CCWWGG | 1 cut(s) | 862 |
| Bst2BI | CACGAG | 1 cut(s) | 172 |
| Bst2UI | CCWGG | 1 cut(s) | 584 |
| Bst4CI | ACNGT | 4 cut(s) | 148, 406, 469, 809 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 659 |
| BstDEI | CTNAG | 1 cut(s) | 887 |
| BstDSI | CCRYGG | 1 cut(s) | 862 |
| BstF5I | GGATG | 1 cut(s) | 266 |
| BstHHI | GCGC | 1 cut(s) | 857 |
| BstKTI | GATC | 4 cut(s) | 200, 400, 619, 639 |
| BstMAI | GTCTC | 1 cut(s) | 481 |
| BstMBI | GATC | 4 cut(s) | 197, 397, 616, 636 |
| BstMCI | CGRYCG | 1 cut(s) | 400 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 62, 638, 659, 878 |
| BstNI | CCWGG | 1 cut(s) | 584 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 675 |
| BstSCI | CCNGG | 1 cut(s) | 582 |
| BstSFI | CTRYAG | 2 cut(s) | 133, 428 |
| BstV1I | GCAGC | 2 cut(s) | 694, 844 |
| BstV2I | GAAGAC | 1 cut(s) | 890 |
| BstX2I | RGATCY | 1 cut(s) | 197 |
| BstYI | RGATCY | 1 cut(s) | 197 |
| Bsu15I | ATCGAT | 1 cut(s) | 396 |
| BsuI | GTATCC | 1 cut(s) | 10 |
| BsuRI | GGCC | 1 cut(s) | 608 |
| BsuTUI | ATCGAT | 1 cut(s) | 396 |
| BtgI | CCRYGG | 1 cut(s) | 862 |
| BtsCI | GGATG | 1 cut(s) | 266 |
| BtsI | GCAGTG | 2 cut(s) | 142, 660 |
| BtsIMutI | CAGTG | 2 cut(s) | 142, 660 |
| CaiI | CAGNNNCTG | 1 cut(s) | 473 |
| CfoI | GCGC | 1 cut(s) | 857 |
| Cfr10I | RCCGGY | 1 cut(s) | 815 |
| ClaI | ATCGAT | 1 cut(s) | 396 |
| Csp6I | GTAC | 2 cut(s) | 402, 549 |
| CviAII | CATG | 3 cut(s) | 449, 727, 863 |
| CviJI | RGCY | 9 cut(s) | 56, 193, 302, 530, 602, 608, 647, 685, 872 |
| CviKI_1 | RGCY | 9 cut(s) | 56, 193, 302, 530, 602, 608, 647, 685, 872 |
| CviQI | GTAC | 2 cut(s) | 402, 549 |
| DdeI | CTNAG | 1 cut(s) | 887 |
| DpnI | GATC | 4 cut(s) | 199, 399, 618, 638 |
| DpnII | GATC | 4 cut(s) | 197, 397, 616, 636 |
| Eco130I | CCWWGG | 1 cut(s) | 862 |
| Eco31I | GGTCTC | 1 cut(s) | 481 |
| Eco57I | CTGAAG | 1 cut(s) | 663 |
| EcoRII | CCWGG | 1 cut(s) | 582 |
| EcoT14I | CCWWGG | 1 cut(s) | 862 |
| ErhI | CCWWGG | 1 cut(s) | 862 |
| FaeI | CATG | 3 cut(s) | 452, 730, 866 |
| FaiI | YATR | 6 cut(s) | 156, 158, 450, 510, 728, 864 |
| FatI | CATG | 3 cut(s) | 448, 726, 862 |
| FauI | CCCGC | 1 cut(s) | 655 |
| FauNDI | CATATG | 1 cut(s) | 156 |
| FbaI | TGATCA | 1 cut(s) | 616 |
| Fnu4HI | GCNGC | 3 cut(s) | 528, 683, 858 |
| FokI | GGATG | 1 cut(s) | 253 |
| Fsp4HI | GCNGC | 3 cut(s) | 528, 683, 858 |
| FspBI | CTAG | 2 cut(s) | 68, 596 |
| GlaI | GCGC | 1 cut(s) | 856 |
| GluI | GCNGC | 3 cut(s) | 528, 683, 858 |
| HaeIII | GGCC | 1 cut(s) | 608 |
| HapII | CCGG | 2 cut(s) | 799, 816 |
| HhaI | GCGC | 1 cut(s) | 857 |
| Hin1II | CATG | 3 cut(s) | 452, 730, 866 |
| Hin6I | GCGC | 1 cut(s) | 855 |
| HinP1I | GCGC | 1 cut(s) | 855 |
| HinfI | GANTC | 2 cut(s) | 109, 716 |
| HpaII | CCGG | 2 cut(s) | 799, 816 |
| HphI | GGTGA | 1 cut(s) | 472 |
| Hpy188I | TCNGA | 2 cut(s) | 197, 888 |
| Hpy188III | TCNNGA | 1 cut(s) | 668 |
| Hpy99I | CGWCG | 1 cut(s) | 798 |
| HpyAV | CCTTC | 2 cut(s) | 289, 706 |
| HpyCH4III | ACNGT | 4 cut(s) | 148, 406, 469, 809 |
| HpyCH4V | TGCA | 8 cut(s) | 129, 135, 284, 318, 386, 430, 537, 624 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 62, 638, 659, 878 |
| HpyF3I | CTNAG | 1 cut(s) | 887 |
| Hsp92II | CATG | 3 cut(s) | 452, 730, 866 |
| HspAI | GCGC | 1 cut(s) | 855 |
| Ksp22I | TGATCA | 1 cut(s) | 616 |
| Kzo9I | GATC | 4 cut(s) | 197, 397, 616, 636 |
| LmnI | GCTCC | 2 cut(s) | 690, 801 |
| Lsp1109I | GCAGC | 2 cut(s) | 694, 844 |
| LweI | GCATC | 3 cut(s) | 52, 225, 395 |
| MaeI | CTAG | 2 cut(s) | 68, 596 |
| MaeIII | GTNAC | 4 cut(s) | 80, 460, 469, 575 |
| MalI | GATC | 4 cut(s) | 199, 399, 618, 638 |
| MboI | GATC | 4 cut(s) | 197, 397, 616, 636 |
| MboII | GAAGA | 2 cut(s) | 352, 890 |
| MfeI | CAATTG | 1 cut(s) | 247 |
| MflI | RGATCY | 1 cut(s) | 197 |
| MhlI | GDGCHC | 1 cut(s) | 173 |
| MlyI | GAGTC | 1 cut(s) | 103 |
| MmeI | TCCRAC | 1 cut(s) | 712 |
| MnlI | CCTC | 4 cut(s) | 213, 501, 598, 882 |
| MseI | TTAA | 1 cut(s) | 779 |
| MspI | CCGG | 2 cut(s) | 799, 816 |
| MspR9I | CCNGG | 1 cut(s) | 584 |
| MunI | CAATTG | 1 cut(s) | 247 |
| MvaI | CCWGG | 1 cut(s) | 584 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 62, 638, 659, 878 |
| NcoI | CCATGG | 1 cut(s) | 862 |
| NdeI | CATATG | 1 cut(s) | 156 |
| NdeII | GATC | 4 cut(s) | 197, 397, 616, 636 |
| NlaIII | CATG | 3 cut(s) | 452, 730, 866 |
| NmeAIII | GCCGAG | 1 cut(s) | 628 |
| NmuCI | GTSAC | 2 cut(s) | 460, 575 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 402 |
| PfeI | GAWTC | 1 cut(s) | 716 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 868 |
| PkrI | GCNGC | 3 cut(s) | 529, 684, 859 |
| Ple19I | CGATCG | 1 cut(s) | 400 |
| PleI | GAGTC | 1 cut(s) | 103 |
| PpsI | GAGTC | 1 cut(s) | 103 |
| PshAI | GACNNNNGTC | 1 cut(s) | 675 |
| PshBI | ATTAAT | 1 cut(s) | 779 |
| PsiI | TTATAA | 1 cut(s) | 510 |
| Psp6I | CCWGG | 1 cut(s) | 582 |
| PspGI | CCWGG | 1 cut(s) | 582 |
| PstI | CTGCAG | 2 cut(s) | 137, 432 |
| PstNI | CAGNNNCTG | 1 cut(s) | 473 |
| PsuI | RGATCY | 1 cut(s) | 197 |
| PvuI | CGATCG | 1 cut(s) | 400 |
| RsaI | GTAC | 2 cut(s) | 403, 550 |
| RsaNI | GTAC | 2 cut(s) | 402, 549 |
| SaqAI | TTAA | 1 cut(s) | 779 |
| SatI | GCNGC | 3 cut(s) | 528, 683, 858 |
| Sau3AI | GATC | 4 cut(s) | 197, 397, 616, 636 |
| SchI | GAGTC | 1 cut(s) | 103 |
| ScrFI | CCNGG | 1 cut(s) | 584 |
| SduI | GDGCHC | 1 cut(s) | 173 |
| SetI | ASST | 7 cut(s) | 82, 304, 413, 493, 548, 649, 687 |
| SfaNI | GCATC | 3 cut(s) | 52, 225, 395 |
| SfcI | CTRYAG | 2 cut(s) | 133, 428 |
| SmlI | CTYRAG | 2 cut(s) | 75, 720 |
| SmoI | CTYRAG | 2 cut(s) | 75, 720 |
| SsiI | CCGC | 2 cut(s) | 527, 662 |
| SspMI | CTAG | 2 cut(s) | 68, 596 |
| StyD4I | CCNGG | 1 cut(s) | 582 |
| StyI | CCWWGG | 1 cut(s) | 862 |
| TaaI | ACNGT | 4 cut(s) | 148, 406, 469, 809 |
| TaqI | TCGA | 2 cut(s) | 396, 420 |
| TatI | WGTACW | 1 cut(s) | 548 |
| TauI | GCSGC | 1 cut(s) | 530 |
| TfiI | GAWTC | 1 cut(s) | 716 |
| Tru1I | TTAA | 1 cut(s) | 779 |
| Tru9I | TTAA | 1 cut(s) | 779 |
| TscAI | CASTG | 2 cut(s) | 142, 660 |
| TseFI | GTSAC | 2 cut(s) | 460, 575 |
| TseI | GCWGC | 2 cut(s) | 682, 857 |
| Tsp45I | GTSAC | 2 cut(s) | 460, 575 |
| TspDTI | ATGAA | 3 cut(s) | 31, 688, 750 |
| TspRI | CASTG | 2 cut(s) | 142, 660 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 868 |
| VspI | ATTAAT | 1 cut(s) | 779 |
| XapI | RAATTY | 2 cut(s) | 37, 589 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 889 |
| XspI | CTAG | 2 cut(s) | 68, 596 |