FvH4_4g25931

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000093
Physical Location & Seq
Forward (+)
27551536 .. 27554232
2697 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g25931.t1

Sequence Viewer

Length: 657 bp
ATGACGCTTGCATCTCAACTCCGTTGGATCGACAACGCCTTGGCTCCGCCGTCTGTCTTGCAACAACGACGCTCGCGGACTCATCATCAGCCGCTATCGGAGTTGGGAACTCCGTCACCGACTCGCCGACCTTTCACACCTCAAGCGACTAGTCGGGAGCTCCTCATCTATCACTTCTCTGCTTCAATTTCTGGCCTTAGCAGAAGGGAAGCTTCTAAAATTATGAGTAACCAACACAGTGGGATTGGTCTAGTGGTGCGTAACCATAGGGGTTGTTCTATTGCTGGTGCAAGTCTCTTGTGCTCCCATAATTCTGTTGTTGAGGCCGAGGCTGACTCGGTGGTTAAAGGTCTTCAAATTGCAAGGTTTCTGAATTTGAAAAATGTTATCATTGAGGGTGATTGCCAGGAGGTCATTAGGTCTCTCTCTTCCCCAACTTTCACTCCCAATTGGAAAATTCTACCTATTCTCAATAGAGTGAAGTTTCTGTTGCCTGCCTTTGATGAGGTGTTATGGAACTGGGTTCCCTGTGAAGCTAACCGGGTTGCTGACGCAGCGGCGAAGCTTGCCATGGTGAGGTTGTGCTCTTCGGACTGGGCTAATACGCCTCCAACCTCCCTCCTTCATATTCTTAAGAGCGATGGCCCCCCTGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 zf-RVT

Protein Analysis

219

Amino Acids

24.03

Weight (kDa)

9.36

Isoelectric Point (pI)

57.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 75 - 190 7.3e-23 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000093)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G09490
fragaria_vesca FvH4_1g23791 FvH4_2g01641 FvH4_2g04612 FvH4_2g06831 FvH4_2g07841 FvH4_2g13581 FvH4_2g27220 FvH4_2g30621 FvH4_2g34753 FvH4_3g10392 FvH4_3g24291 FvH4_3g25030 FvH4_3g29361 FvH4_3g31372 FvH4_3g32402 FvH4_3g43651 FvH4_4g03830 FvH4_4g05481 FvH4_4g20431 FvH4_4g21421 FvH4_4g25931 FvH4_5g08801 FvH4_5g21021 FvH4_5g26254 FvH4_5g30931 FvH4_5g31281 FvH4_5g33581 FvH4_5g35622 FvH4_6g02100 FvH4_6g07963 FvH4_6g11620 FvH4_6g16031 FvH4_6g19041 FvH4_6g24211 FvH4_6g24271 FvH4_6g30670 FvH4_6g49540 FvH4_7g25914
malus_domestica MD03G1245200.v1.1 MD04G1168000.v1.1 MD09G1242600.v1.1 MD15G1334000.v1.1 MD17G1165700.v1.1
prunus_persica Prupe.1G073500_v2.0.a1 Prupe.1G283700_v2.0.a1 Prupe.1G524100_v2.0.a1 Prupe.2G022700_v2.0.a1 Prupe.2G022800_v2.0.a1 Prupe.2G022800_v2.0.a1 Prupe.2G044300_v2.0.a1 Prupe.2G048800_v2.0.a1 Prupe.2G092000_v2.0.a1 Prupe.2G216500_v2.0.a1 Prupe.2G216600_v2.0.a1 Prupe.2G216600_v2.0.a1 Prupe.3G103400_v2.0.a1 Prupe.3G143300_v2.0.a1 Prupe.3G190000_v2.0.a1 Prupe.3G219800_v2.0.a1 Prupe.4G177800_v2.0.a1 Prupe.4G261300_v2.0.a1 Prupe.5G044600_v2.0.a1 Prupe.5G067400_v2.0.a1 Prupe.7G083900_v2.0.a1 Prupe.7G120900_v2.0.a1 Prupe.8G032200_v2.0.a1 Prupe.8G036100_v2.0.a1 Prupe.8G042700_v2.0.a1
pyrus_communis pycom01g21710 pycom02g19770 pycom03g05120 pycom05g01370 pycom05g08780 pycom05g10120 pycom07g01370 pycom07g05930 pycom08g15760 pycom08g18090 pycom08g21060 pycom09g03880 pycom10g03870 pycom13g22240 pycom16g05120 pycom16g17170 pycom17g12180 pycom17g16290 pycom17g21230 pycom17g24990 pycom215g00100
rosa_chinensis RchiOBHm_Chr1g0323031 RchiOBHm_Chr1g0324391 RchiOBHm_Chr1g0326401 RchiOBHm_Chr1g0327811 RchiOBHm_Chr1g0332521 RchiOBHm_Chr1g0336501 RchiOBHm_Chr1g0346021 RchiOBHm_Chr1g0347191 RchiOBHm_Chr1g0367181 RchiOBHm_Chr2g0089441 RchiOBHm_Chr2g0115441 RchiOBHm_Chr3g0490691 RchiOBHm_Chr4g0395251 RchiOBHm_Chr4g0398081 RchiOBHm_Chr4g0409451 RchiOBHm_Chr4g0413041 RchiOBHm_Chr4g0415471 RchiOBHm_Chr4g0420961 RchiOBHm_Chr5g0040301 RchiOBHm_Chr5g0070651 RchiOBHm_Chr6g0263011 RchiOBHm_Chr6g0270721 RchiOBHm_Chr6g0277111 RchiOBHm_Chr7g0179771 RchiOBHm_Chr7g0223051 RchiOBHm_Chr7g0225031 RchiOBHm_Chr7g0225091
rosa_laevigata RLG00000001668 RLG00000001672 RLG00000001676 RLG00000007762 RLG00000008994 RLG00000011117 RLG00000013729 RLG00000013839 RLG00000014759 RLG00000016638 RLG00000018535 RLG00000018614 RLG00000018646 RLG00000020679 RLG00000023337 RLG00000029348 RLG00000035891 RLG00000035912
rosa_multiflora Rmu_co8152500.1_g000001 Rmu_co8203314.1_g000001 Rmu_co8383183.1_g000001 Rmu_sc0000293.1_g000033 Rmu_sc0000367.1_g000226 Rmu_sc0000512.1_g000023 Rmu_sc0000594.1_g000059 Rmu_sc0000654.1_g000022 Rmu_sc0000654.1_g000047 Rmu_sc0000706.1_g000037 Rmu_sc0001348.1_g000008 Rmu_sc0001385.1_g000024 Rmu_sc0001405.1_g000002 Rmu_sc0001521.1_g000048 Rmu_sc0001932.1_g000008 Rmu_sc0001932.1_g000009 Rmu_sc0002535.1_g000011 Rmu_sc0002908.1_g000019 Rmu_sc0003709.1_g000004 Rmu_sc0003882.1_g000054 Rmu_sc0004035.1_g000007 Rmu_sc0004041.1_g000007 Rmu_sc0004288.1_g000011 Rmu_sc0004569.1_g000004 Rmu_sc0004677.1_g000016 Rmu_sc0004834.1_g000010 Rmu_sc0005193.1_g000008 Rmu_sc0005354.1_g000009 Rmu_sc0006514.1_g000021 Rmu_sc0006691.1_g000001 Rmu_sc0006888.1_g000021 Rmu_sc0006889.1_g000013 Rmu_sc0008096.1_g000017 Rmu_sc0008378.1_g000003 Rmu_sc0009127.1_g000005 Rmu_sc0009191.1_g000016 Rmu_sc0009687.1_g000018 Rmu_sc0009709.1_g000005 Rmu_sc0009880.1_g000015 Rmu_sc0011710.1_g000001 Rmu_sc0012615.1_g000004 Rmu_sc0016091.1_g000002 Rmu_sc0022339.1_g000006 Rmu_sc0026537.1_g000002 Rmu_sc0027689.1_g000002 Rmu_sc0036222.1_g000001 Rmu_sc0040890.1_g000001 Rmu_ssc0000148.1_g000006 Rmu_ssc0000151.1_g000017 Rmu_ssc0000404.1_g000018 Rmu_ssc0000449.1_g000009
rosa_roxburghii Rroxscaffold_1G00017760 Rroxscaffold_1G00059150 Rroxscaffold_2G00142560 Rroxscaffold_3G00220440 Rroxscaffold_3G00231700 Rroxscaffold_3G00232400 Rroxscaffold_3G00274510 Rroxscaffold_4G00288790 Rroxscaffold_4G00305680 Rroxscaffold_4G00314880 Rroxscaffold_4G00314900 Rroxscaffold_5G00334590 Rroxscaffold_6G00394110 Rroxscaffold_6G00415860 Rroxscaffold_7G00168240 Rroxscaffold_7G00204400 Rroxscaffold_7G00207840
rosa_rugosa Rorug01G0034900 Rorug02G0079500 Rorug02G0229000 Rorug02G0229100 Rorug02G0291400 Rorug02G0298800 Rorug03G0046400 Rorug03G0064700 Rorug03G0077300 Rorug03G0199000 Rorug03G0200400 Rorug04G0205200 Rorug05G0025400 Rorug05G0127400 Rorug05G0192100 Rorug05G0453400 Rorug05G0538300 Rorug06G0035200 Rorug06G0241000 Rorug06G0268300 Rorug07G0120300 Rorug07G0145000 Rorug07G0209100 Rorug07G0240500 Rorug07G0271700
rosa_samantha Rh1AG179100 Rh1BG106900 Rh1BG163400 Rh1BG163500 Rh1BG323500 Rh2CG447900 Rh2DG503700 Rh3AG293600 Rh3CG229100 Rh3DG221500 Rh4AG106000 Rh4BG267700 Rh4CG062500 Rh4CG090100 Rh4CG114800 Rh5AG038400 Rh5BG395400 Rh5CG441700 Rh5CG572000 Rh6AG222400 Rh6AG264500 Rh6BG137400 Rh6BG225700 Rh6CG144300 Rh6DG087600 Rh6DG096000 Rh6DG362400 Rh6DG390200 Rh7AG207500 Rh7AG324700 Rh7AG388800 Rh7AG437100 Rh7BG019000 Rh7BG374600 Rh7CG028700 Rh7CG341500 Rh7CG408000 Rh7CG408300 Rh7DG354600
rosa_wichuraiana Rw0G009630 Rw0G012170 Rw4G022700 Rw5G028420 Rw5G029490 Rw6G007220 Rw6G007410 Rw6G017880 Rw7G012440 Rw7G021830 Rw7G027490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 76
AciI CCGC 4 cut(s) 47, 76, 92, 557
AclWI GGATC 1 cut(s) 35
AcsI RAATTY 2 cut(s) 373, 456
AfiI CCNNNNNNNGG 1 cut(s) 576
AflII CTTAAG 1 cut(s) 632
AgsI TTSAA 3 cut(s) 186, 356, 379
AhlI ACTAGT 1 cut(s) 149
AjnI CCWGG 1 cut(s) 405
AluBI AGCT 4 cut(s) 160, 212, 536, 565
AluI AGCT 4 cut(s) 160, 212, 536, 565
Alw21I GWGCWC 3 cut(s) 162, 305, 587
Alw26I GTCTC 2 cut(s) 299, 426
AlwI GGATC 1 cut(s) 35
AoxI GGCC 3 cut(s) 193, 324, 643
ApeKI GCWGC 1 cut(s) 554
ApoI RAATTY 2 cut(s) 373, 456
AspS9I GGNCC 1 cut(s) 644
AsuC2I CCSGG 1 cut(s) 542
AsuHPI GGTGA 3 cut(s) 108, 410, 586
BanII GRGCYC 1 cut(s) 162
BbsI GAAGAC 1 cut(s) 344
Bbv12I GWGCWC 3 cut(s) 162, 305, 587
BbvI GCAGC 1 cut(s) 566
BccI CCATC 1 cut(s) 635
BceAI ACGGC 1 cut(s) 34
BciT130I CCWGG 1 cut(s) 407
BcnI CCSGG 1 cut(s) 542
BcoDI GTCTC 2 cut(s) 299, 426
BcuI ACTAGT 1 cut(s) 149
BfaI CTAG 2 cut(s) 150, 251
BfrI CTTAAG 1 cut(s) 632
BisI GCNGC 3 cut(s) 92, 555, 558
BlsI GCNGC 3 cut(s) 93, 556, 559
Bme1390I CCNGG 2 cut(s) 407, 542
BmgT120I GGNCC 1 cut(s) 644
BmiI GGNNCC 3 cut(s) 45, 525, 646
BmrFI CCNGG 2 cut(s) 407, 542
BmrI ACTGGG 2 cut(s) 529, 604
BmsI GCATC 1 cut(s) 20
BmuI ACTGGG 2 cut(s) 529, 604
BpiI GAAGAC 1 cut(s) 344
BplI GAGNNNNNCTC 2 cut(s) 320, 352
Bpu10I CCTNAGC 1 cut(s) 197
BpuEI CTTGAG 1 cut(s) 126
BpuMI CCSGG 1 cut(s) 542
BsaI GGTCTC 1 cut(s) 426
BsaJI CCNNGG 3 cut(s) 39, 327, 570
BsaXI ACNNNNNCTCC 2 cut(s) 427, 457
Bsc4I CCNNNNNNNGG 1 cut(s) 576
Bse1I ACTGG 2 cut(s) 524, 599
BseBI CCWGG 1 cut(s) 407
BseDI CCNNGG 3 cut(s) 39, 327, 570
BseLI CCNNNNNNNGG 1 cut(s) 576
BseNI ACTGG 2 cut(s) 524, 599
BseRI GAGGAG 1 cut(s) 152
BseXI GCAGC 1 cut(s) 566
Bsh1236I CGCG 1 cut(s) 76
BshFI GGCC 3 cut(s) 195, 326, 645
BsiHKAI GWGCWC 3 cut(s) 162, 305, 587
BsiSI CCGG 1 cut(s) 541
BslI CCNNNNNNNGG 1 cut(s) 576
BsmAI GTCTC 2 cut(s) 299, 426
BsnI GGCC 3 cut(s) 195, 326, 645
Bso31I GGTCTC 1 cut(s) 426
Bsp1286I GDGCHC 3 cut(s) 162, 305, 587
Bsp143I GATC 1 cut(s) 27
Bsp19I CCATGG 1 cut(s) 570
BspACI CCGC 4 cut(s) 47, 76, 92, 557
BspANI GGCC 3 cut(s) 195, 326, 645
BspFNI CGCG 1 cut(s) 76
BspLI GGNNCC 3 cut(s) 45, 525, 646
BspPI GGATC 1 cut(s) 35
BspQI GCTCTTC 1 cut(s) 592
BspTI CTTAAG 1 cut(s) 632
BspTNI GGTCTC 1 cut(s) 426
BsrI ACTGG 2 cut(s) 524, 599
BssECI CCNNGG 3 cut(s) 39, 327, 570
BssMI GATC 1 cut(s) 27
BssT1I CCWWGG 2 cut(s) 39, 570
Bst2UI CCWGG 1 cut(s) 407
Bst4CI ACNGT 1 cut(s) 239
Bst6I CTCTTC 2 cut(s) 433, 592
BstAFI CTTAAG 1 cut(s) 632
BstC8I GCNNGC 4 cut(s) 9, 74, 495, 567
BstDEI CTNAG 1 cut(s) 197
BstDSI CCRYGG 1 cut(s) 570
BstFNI CGCG 1 cut(s) 76
BstKTI GATC 1 cut(s) 30
BstMAI GTCTC 2 cut(s) 299, 426
BstMBI GATC 1 cut(s) 27
BstMWI GCNNNNNNNGC 2 cut(s) 554, 566
BstNI CCWGG 1 cut(s) 407
BstSCI CCNGG 2 cut(s) 405, 540
BstUI CGCG 1 cut(s) 76
BstV1I GCAGC 1 cut(s) 566
BstV2I GAAGAC 1 cut(s) 344
BstXI CCANNNNNNTGG 1 cut(s) 239
BsuRI GGCC 3 cut(s) 195, 326, 645
BtgI CCRYGG 1 cut(s) 570
BtsIMutI CAGTG 1 cut(s) 244
Cac8I GCNNGC 4 cut(s) 9, 74, 495, 567
Cfr13I GGNCC 1 cut(s) 644
CseI GACGC 3 cut(s) 13, 78, 560
CviAII CATG 1 cut(s) 571
DdeI CTNAG 1 cut(s) 197
DpnI GATC 1 cut(s) 29
DpnII GATC 1 cut(s) 27
Eam1104I CTCTTC 2 cut(s) 433, 592
EarI CTCTTC 2 cut(s) 433, 592
EciI GGCGGA 1 cut(s) 36
Ecl136II GAGCTC 1 cut(s) 160
Eco130I CCWWGG 2 cut(s) 39, 570
Eco24I GRGCYC 1 cut(s) 162
Eco31I GGTCTC 1 cut(s) 426
Eco53kI GAGCTC 1 cut(s) 160
EcoICRI GAGCTC 1 cut(s) 160
EcoRII CCWGG 1 cut(s) 405
EcoT14I CCWWGG 2 cut(s) 39, 570
EcoT38I GRGCYC 1 cut(s) 162
ErhI CCWWGG 2 cut(s) 39, 570
FaeI CATG 1 cut(s) 574
FaiI YATR 6 cut(s) 224, 267, 309, 514, 572, 627
FalI AAGNNNNNCTT 2 cut(s) 196, 228
FatI CATG 1 cut(s) 570
Fnu4HI GCNGC 3 cut(s) 92, 555, 558
FriOI GRGCYC 1 cut(s) 162
Fsp4HI GCNGC 3 cut(s) 92, 555, 558
FspBI CTAG 2 cut(s) 150, 251
GluI GCNGC 3 cut(s) 92, 555, 558
HaeIII GGCC 3 cut(s) 195, 326, 645
HapII CCGG 1 cut(s) 541
HgaI GACGC 3 cut(s) 13, 78, 560
Hin1II CATG 1 cut(s) 574
HindIII AAGCTT 2 cut(s) 210, 563
HinfI GANTC 3 cut(s) 79, 121, 335
HpaII CCGG 1 cut(s) 541
HphI GGTGA 3 cut(s) 108, 410, 586
Hpy188I TCNGA 3 cut(s) 100, 372, 592
Hpy188III TCNNGA 1 cut(s) 155
Hpy99I CGWCG 1 cut(s) 72
HpyAV CCTTC 2 cut(s) 198, 632
HpyCH4III ACNGT 1 cut(s) 239
HpyCH4V TGCA 4 cut(s) 11, 61, 290, 362
HpyF10VI GCNNNNNNNGC 2 cut(s) 554, 566
HpyF3I CTNAG 1 cut(s) 197
Hsp92II CATG 1 cut(s) 574
Kzo9I GATC 1 cut(s) 27
LguI GCTCTTC 1 cut(s) 592
LmnI GCTCC 4 cut(s) 49, 157, 165, 308
LpnPI CCDG 9 cut(s) 177, 270, 392, 419, 505, 507, 541, 554, 580
Lsp1109I GCAGC 1 cut(s) 566
LweI GCATC 1 cut(s) 20
MaeI CTAG 2 cut(s) 150, 251
MaeIII GTNAC 3 cut(s) 114, 227, 260
MalI GATC 1 cut(s) 29
MboI GATC 1 cut(s) 27
MboII GAAGA 3 cut(s) 344, 420, 579
MfeI CAATTG 1 cut(s) 448
MhlI GDGCHC 3 cut(s) 162, 305, 587
MluCI AATT 7 cut(s) 186, 219, 310, 357, 373, 448, 456
MlyI GAGTC 3 cut(s) 73, 115, 329
MmeI TCCRAC 2 cut(s) 5, 635
MseI TTAA 2 cut(s) 345, 633
MspA1I CMGCKG 1 cut(s) 557
MspCI CTTAAG 1 cut(s) 632
MspI CCGG 1 cut(s) 541
MspR9I CCNGG 2 cut(s) 407, 542
MunI CAATTG 1 cut(s) 448
MvaI CCWGG 1 cut(s) 407
MvnI CGCG 1 cut(s) 76
MwoI GCNNNNNNNGC 2 cut(s) 554, 566
NciI CCSGG 1 cut(s) 542
NcoI CCATGG 1 cut(s) 570
NdeII GATC 1 cut(s) 27
NlaIII CATG 1 cut(s) 574
NlaIV GGNNCC 3 cut(s) 45, 525, 646
NmeAIII GCCGAG 1 cut(s) 352
NmuCI GTSAC 1 cut(s) 114
PciSI GCTCTTC 1 cut(s) 592
PkrI GCNGC 3 cut(s) 93, 556, 559
PleI GAGTC 3 cut(s) 73, 115, 329
PpsI GAGTC 3 cut(s) 73, 115, 329
Psp124BI GAGCTC 1 cut(s) 162
Psp6I CCWGG 1 cut(s) 405
PspGI CCWGG 1 cut(s) 405
PspN4I GGNNCC 3 cut(s) 45, 525, 646
PspPI GGNCC 1 cut(s) 644
SacI GAGCTC 1 cut(s) 162
SapI GCTCTTC 1 cut(s) 592
SaqAI TTAA 2 cut(s) 345, 633
SatI GCNGC 3 cut(s) 92, 555, 558
Sau3AI GATC 1 cut(s) 27
Sau96I GGNCC 1 cut(s) 644
SchI GAGTC 3 cut(s) 73, 115, 329
ScrFI CCNGG 2 cut(s) 407, 542
SduI GDGCHC 3 cut(s) 162, 305, 587
SfaNI GCATC 1 cut(s) 20
SmlI CTYRAG 2 cut(s) 141, 632
SmoI CTYRAG 2 cut(s) 141, 632
SpeI ACTAGT 1 cut(s) 149
Sse9I AATT 7 cut(s) 186, 219, 310, 357, 373, 448, 456
SsiI CCGC 4 cut(s) 47, 76, 92, 557
SspMI CTAG 2 cut(s) 150, 251
SstI GAGCTC 1 cut(s) 162
StyD4I CCNGG 2 cut(s) 405, 540
StyI CCWWGG 2 cut(s) 39, 570
TaaI ACNGT 1 cut(s) 239
TaqI TCGA 1 cut(s) 30
TasI AATT 7 cut(s) 186, 219, 310, 357, 373, 448, 456
TauI GCSGC 2 cut(s) 94, 560
Tru1I TTAA 2 cut(s) 345, 633
Tru9I TTAA 2 cut(s) 345, 633
TscAI CASTG 1 cut(s) 244
TseFI GTSAC 1 cut(s) 114
TseI GCWGC 1 cut(s) 554
Tsp45I GTSAC 1 cut(s) 114
TspDTI ATGAA 1 cut(s) 614
TspGWI ACGGA 2 cut(s) 11, 102
TspRI CASTG 1 cut(s) 244
Vha464I CTTAAG 1 cut(s) 632
XapI RAATTY 2 cut(s) 373, 456
XspI CTAG 2 cut(s) 150, 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.