ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 26 - 148 | 6.1e-18 | Reverse transcriptase-like |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 490 |
| AccB1I | GGYRCC | 1 cut(s) | 15 |
| AccII | CGCG | 2 cut(s) | 200, 439 |
| AciI | CCGC | 2 cut(s) | 13, 419 |
| AclWI | GGATC | 1 cut(s) | 479 |
| AcsI | RAATTY | 2 cut(s) | 94, 319 |
| AcuI | CTGAAG | 2 cut(s) | 216, 240 |
| AfaI | GTAC | 1 cut(s) | 148 |
| AgsI | TTSAA | 3 cut(s) | 99, 269, 306 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 520 |
| AluBI | AGCT | 5 cut(s) | 73, 113, 236, 367, 443 |
| AluI | AGCT | 5 cut(s) | 73, 113, 236, 367, 443 |
| Alw26I | GTCTC | 1 cut(s) | 342 |
| AlwI | GGATC | 1 cut(s) | 479 |
| ApeKI | GCWGC | 2 cut(s) | 70, 416 |
| ApoI | RAATTY | 2 cut(s) | 94, 319 |
| AseI | ATTAAT | 1 cut(s) | 156 |
| AsuHPI | GGTGA | 1 cut(s) | 40 |
| BanI | GGYRCC | 1 cut(s) | 15 |
| BbvI | GCAGC | 2 cut(s) | 82, 428 |
| BccI | CCATC | 1 cut(s) | 77 |
| BceAI | ACGGC | 1 cut(s) | 532 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 9, 43 |
| BcoDI | GTCTC | 1 cut(s) | 342 |
| BfaI | CTAG | 1 cut(s) | 237 |
| BfuAI | ACCTGC | 1 cut(s) | 490 |
| BisI | GCNGC | 4 cut(s) | 14, 71, 417, 420 |
| BlsI | GCNGC | 4 cut(s) | 15, 72, 418, 421 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 520 |
| BmiI | GGNNCC | 1 cut(s) | 17 |
| BmsI | GCATC | 3 cut(s) | 17, 113, 486 |
| BpuEI | CTTGAG | 1 cut(s) | 389 |
| BsaBI | GATNNNNATC | 1 cut(s) | 31 |
| Bse1I | ACTGG | 1 cut(s) | 148 |
| Bse3DI | GCAATG | 1 cut(s) | 207 |
| Bse8I | GATNNNNATC | 1 cut(s) | 31 |
| BseGI | GGATG | 2 cut(s) | 15, 128 |
| BseJI | GATNNNNATC | 1 cut(s) | 31 |
| BseMI | GCAATG | 1 cut(s) | 207 |
| BseNI | ACTGG | 1 cut(s) | 148 |
| BseRI | GAGGAG | 2 cut(s) | 29, 519 |
| BseXI | GCAGC | 2 cut(s) | 82, 428 |
| BseYI | CCCAGC | 1 cut(s) | 113 |
| Bsh1236I | CGCG | 2 cut(s) | 200, 439 |
| BshNI | GGYRCC | 1 cut(s) | 15 |
| BsmAI | GTCTC | 1 cut(s) | 342 |
| Bsp143I | GATC | 1 cut(s) | 471 |
| BspACI | CCGC | 2 cut(s) | 13, 419 |
| BspFNI | CGCG | 2 cut(s) | 200, 439 |
| BspLI | GGNNCC | 1 cut(s) | 17 |
| BspMI | ACCTGC | 1 cut(s) | 490 |
| BspPI | GGATC | 1 cut(s) | 479 |
| BspT107I | GGYRCC | 1 cut(s) | 15 |
| BsrDI | GCAATG | 1 cut(s) | 207 |
| BsrI | ACTGG | 1 cut(s) | 148 |
| BssMI | GATC | 1 cut(s) | 471 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 188 |
| BstC8I | GCNNGC | 3 cut(s) | 198, 432, 441 |
| BstDEI | CTNAG | 1 cut(s) | 217 |
| BstF5I | GGATG | 2 cut(s) | 15, 128 |
| BstFNI | CGCG | 2 cut(s) | 200, 439 |
| BstKTI | GATC | 1 cut(s) | 474 |
| BstMAI | GTCTC | 1 cut(s) | 342 |
| BstMBI | GATC | 1 cut(s) | 471 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 188, 197, 373, 436, 440 |
| BstUI | CGCG | 2 cut(s) | 200, 439 |
| BstV1I | GCAGC | 2 cut(s) | 82, 428 |
| BtgZI | GCGATG | 1 cut(s) | 18 |
| BtsCI | GGATG | 2 cut(s) | 15, 128 |
| BveI | ACCTGC | 1 cut(s) | 490 |
| Cac8I | GCNNGC | 3 cut(s) | 198, 432, 441 |
| Csp6I | GTAC | 1 cut(s) | 147 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 474, 509 |
| CviQI | GTAC | 1 cut(s) | 147 |
| DdeI | CTNAG | 1 cut(s) | 217 |
| DpnI | GATC | 1 cut(s) | 473 |
| DpnII | GATC | 1 cut(s) | 471 |
| DriI | GACNNNNNGTC | 1 cut(s) | 520 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 520 |
| Eco57I | CTGAAG | 2 cut(s) | 216, 240 |
| EcoRI | GAATTC | 1 cut(s) | 94 |
| EcoT22I | ATGCAT | 1 cut(s) | 128 |
| FaiI | YATR | 1 cut(s) | 325 |
| Fnu4HI | GCNGC | 4 cut(s) | 14, 71, 417, 420 |
| FokI | GGATG | 2 cut(s) | 22, 135 |
| Fsp4HI | GCNGC | 4 cut(s) | 14, 71, 417, 420 |
| FspBI | CTAG | 1 cut(s) | 237 |
| GluI | GCNGC | 4 cut(s) | 14, 71, 417, 420 |
| GsaI | CCCAGC | 1 cut(s) | 117 |
| HindIII | AAGCTT | 1 cut(s) | 365 |
| HinfI | GANTC | 1 cut(s) | 275 |
| HphI | GGTGA | 1 cut(s) | 40 |
| Hpy188I | TCNGA | 3 cut(s) | 9, 134, 280 |
| Hpy188III | TCNNGA | 2 cut(s) | 245, 400 |
| HpyAV | CCTTC | 1 cut(s) | 264 |
| HpyCH4V | TGCA | 5 cut(s) | 70, 126, 196, 434, 499 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 188, 197, 373, 436, 440 |
| HpyF3I | CTNAG | 1 cut(s) | 217 |
| Kzo9I | GATC | 1 cut(s) | 471 |
| LmnI | GCTCC | 2 cut(s) | 42, 532 |
| LpnPI | CCDG | 4 cut(s) | 99, 129, 230, 485 |
| Lsp1109I | GCAGC | 2 cut(s) | 82, 428 |
| LweI | GCATC | 3 cut(s) | 17, 113, 486 |
| MaeI | CTAG | 1 cut(s) | 237 |
| MaeIII | GTNAC | 1 cut(s) | 410 |
| MalI | GATC | 1 cut(s) | 473 |
| MboI | GATC | 1 cut(s) | 471 |
| MboII | GAAGA | 1 cut(s) | 370 |
| MfeI | CAATTG | 1 cut(s) | 284 |
| MluCI | AATT | 7 cut(s) | 76, 94, 150, 284, 297, 319, 510 |
| MnlI | CCTC | 7 cut(s) | 50, 61, 214, 348, 387, 492, 540 |
| Mph1103I | ATGCAT | 1 cut(s) | 128 |
| MseI | TTAA | 4 cut(s) | 156, 168, 363, 507 |
| MspA1I | CMGCKG | 2 cut(s) | 73, 419 |
| MunI | CAATTG | 1 cut(s) | 284 |
| MvnI | CGCG | 2 cut(s) | 200, 439 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 188, 197, 373, 436, 440 |
| NdeII | GATC | 1 cut(s) | 471 |
| NlaIV | GGNNCC | 1 cut(s) | 17 |
| NsiI | ATGCAT | 1 cut(s) | 128 |
| PfeI | GAWTC | 1 cut(s) | 275 |
| PkrI | GCNGC | 4 cut(s) | 15, 72, 418, 421 |
| PshBI | ATTAAT | 1 cut(s) | 156 |
| PspFI | CCCAGC | 1 cut(s) | 113 |
| PspN4I | GGNNCC | 1 cut(s) | 17 |
| PvuII | CAGCTG | 1 cut(s) | 73 |
| RsaI | GTAC | 1 cut(s) | 148 |
| RsaNI | GTAC | 1 cut(s) | 147 |
| SaqAI | TTAA | 4 cut(s) | 156, 168, 363, 507 |
| SatI | GCNGC | 4 cut(s) | 14, 71, 417, 420 |
| Sau3AI | GATC | 1 cut(s) | 471 |
| SetI | ASST | 9 cut(s) | 53, 75, 115, 176, 238, 369, 445, 484, 504 |
| SfaNI | GCATC | 3 cut(s) | 17, 113, 486 |
| SmlI | CTYRAG | 1 cut(s) | 368 |
| SmoI | CTYRAG | 1 cut(s) | 368 |
| Sse9I | AATT | 7 cut(s) | 76, 94, 150, 284, 297, 319, 510 |
| SsiI | CCGC | 2 cut(s) | 13, 419 |
| SspMI | CTAG | 1 cut(s) | 237 |
| TasI | AATT | 7 cut(s) | 76, 94, 150, 284, 297, 319, 510 |
| TauI | GCSGC | 2 cut(s) | 16, 422 |
| TfiI | GAWTC | 1 cut(s) | 275 |
| Tru1I | TTAA | 4 cut(s) | 156, 168, 363, 507 |
| Tru9I | TTAA | 4 cut(s) | 156, 168, 363, 507 |
| TseI | GCWGC | 2 cut(s) | 70, 416 |
| TspDTI | ATGAA | 1 cut(s) | 480 |
| VspI | ATTAAT | 1 cut(s) | 156 |
| XapI | RAATTY | 2 cut(s) | 94, 319 |
| XspI | CTAG | 1 cut(s) | 237 |
| Zsp2I | ATGCAT | 1 cut(s) | 128 |