RchiOBHm_Chr2g0115441

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000093
Physical Location & Seq
Forward (+)
27563618 .. 27565098
1481 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ48861

Sequence Viewer

Length: 981 bp
ATGGTCTCCTATCTCTGTTGGGAAATTTGGAAAGCTCGTTGTTCCTTTATCTATCAAGGCACTCCCATCAATCCTTTGTCAATTGCTTCATCTGCTACCAAGGCTGCAACTGAGTTTATCCTCTACTCAAGAAACAAAATTCATGTTATGCATCCATGTGAACCCCTGCAATCCACTCAGGTATGTCCCTATCCCCCTCCATCTTCTTCACTCATTCCCCCTTCTCTCTCTTCCCTTTCTCTCTATAATCAACCCCATCACACTCGTATTAGTCCACACCTCCAGAACCCCATTTCTACCAACCTACTTCATCCAGCTCACTCACCTCATCACCTAAATTCCATCACAACTCTTCCTCCAAGCCAGATCCATCCAGATCCCATCCATATGCATCCTCCCCAAATCTCCCAAAGTCATGTCCATCATCACAACCCCAACCGTCCCACCCACAGTGTGCTTCACCTTCATACTTCTTACCTTTGGAAACCACCACCTCACGGACACATAAAGATAAATTTGGATGCAAGTTGGGCAATTAATACTCACCTCGTTGGGTTGGGCGTAATTGCAAGAGATTGCCGGAGTAAGATGATTGACGGTGTTCATTCGATTTGTCAAGCTTATTCGGCACTCGAAGCAGAAGCCCGTGCAGCCATCCTGGCTTGCAATCTTGCCGAAAAGCTCTCCCCTGCTCCAATCATCATCGAATCAGACTCAAAGTGTTTGATCGATGCCATCAACTCTCCCTCAACTTGCAAAATCTGGAGCATCTACCCTGCAGTTGCAAAGATCAAGAACTCTCCCTCCTTCCGGCAGCGTATTTCTTGGTCATGGGTCTCAAGAAAAGCGAATTCGGCGGTGGATCACCTCGCCTCGCTTGCGGTGCGGAGAATGTGCCCGGACGTCTGGATTGATCGTCCGCCATCCTCCCTTGTTGGTATTCTATCAAGAGATGGATTGCCCTGCCCTCCATCTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04144 map04144
Pfam Domains
Protein Families
RVT_3 zf-RVT

Protein Analysis

326

Amino Acids

36.07

Weight (kDa)

9.07

Isoelectric Point (pI)

58.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 172 - 293 4.8e-15 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000093)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G09490
fragaria_vesca FvH4_1g23791 FvH4_2g01641 FvH4_2g04612 FvH4_2g06831 FvH4_2g07841 FvH4_2g13581 FvH4_2g27220 FvH4_2g30621 FvH4_2g34753 FvH4_3g10392 FvH4_3g24291 FvH4_3g25030 FvH4_3g29361 FvH4_3g31372 FvH4_3g32402 FvH4_3g43651 FvH4_4g03830 FvH4_4g05481 FvH4_4g20431 FvH4_4g21421 FvH4_4g25931 FvH4_5g08801 FvH4_5g21021 FvH4_5g26254 FvH4_5g30931 FvH4_5g31281 FvH4_5g33581 FvH4_5g35622 FvH4_6g02100 FvH4_6g07963 FvH4_6g11620 FvH4_6g16031 FvH4_6g19041 FvH4_6g24211 FvH4_6g24271 FvH4_6g30670 FvH4_6g49540 FvH4_7g25914
malus_domestica MD03G1245200.v1.1 MD04G1168000.v1.1 MD09G1242600.v1.1 MD15G1334000.v1.1 MD17G1165700.v1.1
prunus_persica Prupe.1G073500_v2.0.a1 Prupe.1G283700_v2.0.a1 Prupe.1G524100_v2.0.a1 Prupe.2G022700_v2.0.a1 Prupe.2G022800_v2.0.a1 Prupe.2G022800_v2.0.a1 Prupe.2G044300_v2.0.a1 Prupe.2G048800_v2.0.a1 Prupe.2G092000_v2.0.a1 Prupe.2G216500_v2.0.a1 Prupe.2G216600_v2.0.a1 Prupe.2G216600_v2.0.a1 Prupe.3G103400_v2.0.a1 Prupe.3G143300_v2.0.a1 Prupe.3G190000_v2.0.a1 Prupe.3G219800_v2.0.a1 Prupe.4G177800_v2.0.a1 Prupe.4G261300_v2.0.a1 Prupe.5G044600_v2.0.a1 Prupe.5G067400_v2.0.a1 Prupe.7G083900_v2.0.a1 Prupe.7G120900_v2.0.a1 Prupe.8G032200_v2.0.a1 Prupe.8G036100_v2.0.a1 Prupe.8G042700_v2.0.a1
pyrus_communis pycom01g21710 pycom02g19770 pycom03g05120 pycom05g01370 pycom05g08780 pycom05g10120 pycom07g01370 pycom07g05930 pycom08g15760 pycom08g18090 pycom08g21060 pycom09g03880 pycom10g03870 pycom13g22240 pycom16g05120 pycom16g17170 pycom17g12180 pycom17g16290 pycom17g21230 pycom17g24990 pycom215g00100
rosa_chinensis RchiOBHm_Chr1g0323031 RchiOBHm_Chr1g0324391 RchiOBHm_Chr1g0326401 RchiOBHm_Chr1g0327811 RchiOBHm_Chr1g0332521 RchiOBHm_Chr1g0336501 RchiOBHm_Chr1g0346021 RchiOBHm_Chr1g0347191 RchiOBHm_Chr1g0367181 RchiOBHm_Chr2g0089441 RchiOBHm_Chr2g0115441 RchiOBHm_Chr3g0490691 RchiOBHm_Chr4g0395251 RchiOBHm_Chr4g0398081 RchiOBHm_Chr4g0409451 RchiOBHm_Chr4g0413041 RchiOBHm_Chr4g0415471 RchiOBHm_Chr4g0420961 RchiOBHm_Chr5g0040301 RchiOBHm_Chr5g0070651 RchiOBHm_Chr6g0263011 RchiOBHm_Chr6g0270721 RchiOBHm_Chr6g0277111 RchiOBHm_Chr7g0179771 RchiOBHm_Chr7g0223051 RchiOBHm_Chr7g0225031 RchiOBHm_Chr7g0225091
rosa_laevigata RLG00000001668 RLG00000001672 RLG00000001676 RLG00000007762 RLG00000008994 RLG00000011117 RLG00000013729 RLG00000013839 RLG00000014759 RLG00000016638 RLG00000018535 RLG00000018614 RLG00000018646 RLG00000020679 RLG00000023337 RLG00000029348 RLG00000035891 RLG00000035912
rosa_multiflora Rmu_co8152500.1_g000001 Rmu_co8203314.1_g000001 Rmu_co8383183.1_g000001 Rmu_sc0000293.1_g000033 Rmu_sc0000367.1_g000226 Rmu_sc0000512.1_g000023 Rmu_sc0000594.1_g000059 Rmu_sc0000654.1_g000022 Rmu_sc0000654.1_g000047 Rmu_sc0000706.1_g000037 Rmu_sc0001348.1_g000008 Rmu_sc0001385.1_g000024 Rmu_sc0001405.1_g000002 Rmu_sc0001521.1_g000048 Rmu_sc0001932.1_g000008 Rmu_sc0001932.1_g000009 Rmu_sc0002535.1_g000011 Rmu_sc0002908.1_g000019 Rmu_sc0003709.1_g000004 Rmu_sc0003882.1_g000054 Rmu_sc0004035.1_g000007 Rmu_sc0004041.1_g000007 Rmu_sc0004288.1_g000011 Rmu_sc0004569.1_g000004 Rmu_sc0004677.1_g000016 Rmu_sc0004834.1_g000010 Rmu_sc0005193.1_g000008 Rmu_sc0005354.1_g000009 Rmu_sc0006514.1_g000021 Rmu_sc0006691.1_g000001 Rmu_sc0006888.1_g000021 Rmu_sc0006889.1_g000013 Rmu_sc0008096.1_g000017 Rmu_sc0008378.1_g000003 Rmu_sc0009127.1_g000005 Rmu_sc0009191.1_g000016 Rmu_sc0009687.1_g000018 Rmu_sc0009709.1_g000005 Rmu_sc0009880.1_g000015 Rmu_sc0011710.1_g000001 Rmu_sc0012615.1_g000004 Rmu_sc0016091.1_g000002 Rmu_sc0022339.1_g000006 Rmu_sc0026537.1_g000002 Rmu_sc0027689.1_g000002 Rmu_sc0036222.1_g000001 Rmu_sc0040890.1_g000001 Rmu_ssc0000148.1_g000006 Rmu_ssc0000151.1_g000017 Rmu_ssc0000404.1_g000018 Rmu_ssc0000449.1_g000009
rosa_roxburghii Rroxscaffold_1G00017760 Rroxscaffold_1G00059150 Rroxscaffold_2G00142560 Rroxscaffold_3G00220440 Rroxscaffold_3G00231700 Rroxscaffold_3G00232400 Rroxscaffold_3G00274510 Rroxscaffold_4G00288790 Rroxscaffold_4G00305680 Rroxscaffold_4G00314880 Rroxscaffold_4G00314900 Rroxscaffold_5G00334590 Rroxscaffold_6G00394110 Rroxscaffold_6G00415860 Rroxscaffold_7G00168240 Rroxscaffold_7G00204400 Rroxscaffold_7G00207840
rosa_rugosa Rorug01G0034900 Rorug02G0079500 Rorug02G0229000 Rorug02G0229100 Rorug02G0291400 Rorug02G0298800 Rorug03G0046400 Rorug03G0064700 Rorug03G0077300 Rorug03G0199000 Rorug03G0200400 Rorug04G0205200 Rorug05G0025400 Rorug05G0127400 Rorug05G0192100 Rorug05G0453400 Rorug05G0538300 Rorug06G0035200 Rorug06G0241000 Rorug06G0268300 Rorug07G0120300 Rorug07G0145000 Rorug07G0209100 Rorug07G0240500 Rorug07G0271700
rosa_samantha Rh1AG179100 Rh1BG106900 Rh1BG163400 Rh1BG163500 Rh1BG323500 Rh2CG447900 Rh2DG503700 Rh3AG293600 Rh3CG229100 Rh3DG221500 Rh4AG106000 Rh4BG267700 Rh4CG062500 Rh4CG090100 Rh4CG114800 Rh5AG038400 Rh5BG395400 Rh5CG441700 Rh5CG572000 Rh6AG222400 Rh6AG264500 Rh6BG137400 Rh6BG225700 Rh6CG144300 Rh6DG087600 Rh6DG096000 Rh6DG362400 Rh6DG390200 Rh7AG207500 Rh7AG324700 Rh7AG388800 Rh7AG437100 Rh7BG019000 Rh7BG374600 Rh7CG028700 Rh7CG341500 Rh7CG408000 Rh7CG408300 Rh7DG354600
rosa_wichuraiana Rw0G009630 Rw0G012170 Rw4G022700 Rw5G028420 Rw5G029490 Rw6G007220 Rw6G007410 Rw6G017880 Rw7G012440 Rw7G021830 Rw7G027490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 906
AciI CCGC 4 cut(s) 857, 881, 886, 920
AclWI GGATC 3 cut(s) 361, 371, 870
AcsI RAATTY 5 cut(s) 24, 138, 337, 514, 850
AcyI GRCGYC 1 cut(s) 903
AdeI CACNNNGTG 1 cut(s) 454
AfiI CCNNNNNNNGG 2 cut(s) 497, 810
AjnI CCWGG 1 cut(s) 657
AloI GAACNNNNNNTCC 2 cut(s) 788, 820
AluBI AGCT 4 cut(s) 35, 317, 620, 682
AluI AGCT 4 cut(s) 35, 317, 620, 682
Alw26I GTCTC 2 cut(s) 10, 841
AlwI GGATC 3 cut(s) 361, 371, 870
ApeKI GCWGC 3 cut(s) 104, 650, 814
ApoI RAATTY 5 cut(s) 24, 138, 337, 514, 850
AseI ATTAAT 1 cut(s) 537
AsuC2I CCSGG 1 cut(s) 899
AsuHPI GGTGA 5 cut(s) 315, 323, 452, 536, 857
BaeGI GKGCMC 1 cut(s) 899
BbvI GCAGC 3 cut(s) 91, 662, 826
BciT130I CCWGG 1 cut(s) 659
BcnI CCSGG 1 cut(s) 899
BcoDI GTCTC 2 cut(s) 10, 841
BfmI CTRYAG 1 cut(s) 777
BglI GCCNNNNNGGC 1 cut(s) 659
BisI GCNGC 3 cut(s) 105, 651, 815
BlsI GCNGC 3 cut(s) 106, 652, 816
Bme1390I CCNGG 2 cut(s) 659, 899
BmrFI CCNGG 2 cut(s) 659, 899
BmsI GCATC 5 cut(s) 160, 400, 511, 721, 777
BpmI CTGGAG 2 cut(s) 266, 784
BpuEI CTTGAG 2 cut(s) 112, 823
BpuMI CCSGG 1 cut(s) 899
Bsa29I ATCGAT 1 cut(s) 729
BsaHI GRCGYC 1 cut(s) 903
BsaI GGTCTC 2 cut(s) 10, 841
BsaJI CCNNGG 1 cut(s) 99
BsaXI ACNNNNNCTCC 4 cut(s) 340, 370, 788, 818
Bsc4I CCNNNNNNNGG 2 cut(s) 497, 810
BseBI CCWGG 1 cut(s) 659
BseCI ATCGAT 1 cut(s) 729
BseDI CCNNGG 1 cut(s) 99
BseGI GGATG 8 cut(s) 151, 310, 370, 381, 391, 526, 654, 923
BseLI CCNNNNNNNGG 2 cut(s) 497, 810
BseMII CTCAG 2 cut(s) 102, 191
BseSI GKGCMC 1 cut(s) 899
BseXI GCAGC 3 cut(s) 91, 662, 826
BsgI GTGCAG 1 cut(s) 669
BshVI ATCGAT 1 cut(s) 729
BsiSI CCGG 3 cut(s) 580, 811, 899
BslFI GGGAC 2 cut(s) 171, 426
BslI CCNNNNNNNGG 2 cut(s) 497, 810
BsmAI GTCTC 2 cut(s) 10, 841
BsmFI GGGAC 2 cut(s) 171, 426
Bso31I GGTCTC 2 cut(s) 10, 841
Bsp1286I GDGCHC 1 cut(s) 899
Bsp143I GATC 6 cut(s) 366, 376, 726, 789, 862, 913
BspACI CCGC 4 cut(s) 857, 881, 886, 920
BspCNI CTCAG 2 cut(s) 103, 190
BspDI ATCGAT 1 cut(s) 729
BspHI TCATGA 1 cut(s) 977
BspMAI CTGCAG 1 cut(s) 781
BspPI GGATC 3 cut(s) 361, 371, 870
BspTNI GGTCTC 2 cut(s) 10, 841
BssECI CCNNGG 1 cut(s) 99
BssMI GATC 6 cut(s) 366, 376, 726, 789, 862, 913
BssNI GRCGYC 1 cut(s) 903
BssT1I CCWWGG 1 cut(s) 99
Bst2UI CCWGG 1 cut(s) 659
Bst4CI ACNGT 3 cut(s) 440, 452, 599
Bst6I CTCTTC 2 cut(s) 235, 357
BstACI GRCGYC 1 cut(s) 903
BstC8I GCNNGC 2 cut(s) 664, 879
BstDEI CTNAG 2 cut(s) 111, 177
BstF5I GGATG 8 cut(s) 151, 310, 370, 381, 391, 526, 654, 923
BstKTI GATC 6 cut(s) 369, 379, 729, 792, 865, 916
BstMAI GTCTC 2 cut(s) 10, 841
BstMBI GATC 6 cut(s) 366, 376, 726, 789, 862, 913
BstNI CCWGG 1 cut(s) 659
BstSCI CCNGG 2 cut(s) 657, 897
BstSFI CTRYAG 1 cut(s) 777
BstSLI GKGCMC 1 cut(s) 899
BstV1I GCAGC 3 cut(s) 91, 662, 826
BstX2I RGATCY 2 cut(s) 366, 376
BstYI RGATCY 2 cut(s) 366, 376
Bsu15I ATCGAT 1 cut(s) 729
BsuTUI ATCGAT 1 cut(s) 729
BtsCI GGATG 8 cut(s) 151, 310, 370, 381, 391, 526, 654, 923
BtsIMutI CAGTG 1 cut(s) 457
Cac8I GCNNGC 2 cut(s) 664, 879
CciI TCATGA 1 cut(s) 977
ClaI ATCGAT 1 cut(s) 729
CviAII CATG 5 cut(s) 143, 156, 416, 831, 978
CviJI RGCY 9 cut(s) 35, 104, 317, 363, 620, 644, 653, 662, 682
CviKI_1 RGCY 9 cut(s) 35, 104, 317, 363, 620, 644, 653, 662, 682
DdeI CTNAG 2 cut(s) 111, 177
DpnI GATC 6 cut(s) 368, 378, 728, 791, 864, 915
DpnII GATC 6 cut(s) 366, 376, 726, 789, 862, 913
DraIII CACNNNGTG 1 cut(s) 454
Eam1104I CTCTTC 2 cut(s) 235, 357
EarI CTCTTC 2 cut(s) 235, 357
EciI GGCGGA 1 cut(s) 909
Eco130I CCWWGG 1 cut(s) 99
Eco31I GGTCTC 2 cut(s) 10, 841
EcoRI GAATTC 1 cut(s) 850
EcoRII CCWGG 1 cut(s) 657
EcoT14I CCWWGG 1 cut(s) 99
EcoT22I ATGCAT 2 cut(s) 153, 393
ErhI CCWWGG 1 cut(s) 99
FaeI CATG 5 cut(s) 146, 159, 419, 834, 981
FaqI GGGAC 2 cut(s) 171, 426
FatI CATG 5 cut(s) 142, 155, 415, 830, 977
FauNDI CATATG 1 cut(s) 387
Fnu4HI GCNGC 3 cut(s) 105, 651, 815
FokI GGATG 8 cut(s) 138, 297, 357, 368, 378, 533, 641, 910
Fsp4HI GCNGC 3 cut(s) 105, 651, 815
GluI GCNGC 3 cut(s) 105, 651, 815
GsuI CTGGAG 2 cut(s) 266, 784
HapII CCGG 3 cut(s) 580, 811, 899
Hin1I GRCGYC 1 cut(s) 903
Hin1II CATG 5 cut(s) 146, 159, 419, 834, 981
HindIII AAGCTT 1 cut(s) 618
HinfI GANTC 2 cut(s) 707, 713
HpaII CCGG 3 cut(s) 580, 811, 899
HphI GGTGA 5 cut(s) 315, 323, 452, 536, 857
Hpy166II GTNNAC 2 cut(s) 161, 275
Hpy188I TCNGA 1 cut(s) 712
Hpy188III TCNNGA 9 cut(s) 129, 283, 374, 763, 793, 840, 907, 948, 978
Hpy8I GTNNAC 2 cut(s) 161, 275
HpyAV CCTTC 3 cut(s) 231, 473, 817
HpyCH4III ACNGT 3 cut(s) 440, 452, 599
HpyCH4IV ACGT 1 cut(s) 903
HpyF3I CTNAG 2 cut(s) 111, 177
HpySE526I ACGT 1 cut(s) 903
Hsp92I GRCGYC 1 cut(s) 903
Hsp92II CATG 5 cut(s) 146, 159, 419, 834, 981
Kzo9I GATC 6 cut(s) 366, 376, 726, 789, 862, 913
LmnI GCTCC 2 cut(s) 697, 765
Lsp1109I GCAGC 3 cut(s) 91, 662, 826
LweI GCATC 5 cut(s) 160, 400, 511, 721, 777
MaeII ACGT 1 cut(s) 903
MalI GATC 6 cut(s) 368, 378, 728, 791, 864, 915
MboI GATC 6 cut(s) 366, 376, 726, 789, 862, 913
MboII GAAGA 5 cut(s) 195, 198, 222, 344, 966
MfeI CAATTG 1 cut(s) 81
MflI RGATCY 2 cut(s) 366, 376
MhlI GDGCHC 1 cut(s) 899
MluCI AATT 8 cut(s) 24, 81, 138, 337, 514, 534, 564, 850
MlyI GAGTC 1 cut(s) 707
Mph1103I ATGCAT 2 cut(s) 153, 393
MseI TTAA 1 cut(s) 537
MslI CAYNNNNRTG 3 cut(s) 156, 386, 976
MspI CCGG 3 cut(s) 580, 811, 899
MspR9I CCNGG 2 cut(s) 659, 899
MunI CAATTG 1 cut(s) 81
MvaI CCWGG 1 cut(s) 659
NciI CCSGG 1 cut(s) 899
NdeI CATATG 1 cut(s) 387
NdeII GATC 6 cut(s) 366, 376, 726, 789, 862, 913
NlaIII CATG 5 cut(s) 146, 159, 419, 834, 981
NsiI ATGCAT 2 cut(s) 153, 393
PagI TCATGA 1 cut(s) 977
PfeI GAWTC 1 cut(s) 707
PkrI GCNGC 3 cut(s) 106, 652, 816
PleI GAGTC 1 cut(s) 707
PpsI GAGTC 1 cut(s) 707
PshBI ATTAAT 1 cut(s) 537
Psp6I CCWGG 1 cut(s) 657
PspGI CCWGG 1 cut(s) 657
PstI CTGCAG 1 cut(s) 781
PsuI RGATCY 2 cut(s) 366, 376
RseI CAYNNNNRTG 3 cut(s) 156, 386, 976
SaqAI TTAA 1 cut(s) 537
SatI GCNGC 3 cut(s) 105, 651, 815
Sau3AI GATC 6 cut(s) 366, 376, 726, 789, 862, 913
SchI GAGTC 1 cut(s) 707
ScrFI CCNGG 2 cut(s) 659, 899
SduI GDGCHC 1 cut(s) 899
SfaNI GCATC 5 cut(s) 160, 400, 511, 721, 777
SfcI CTRYAG 1 cut(s) 777
SmiMI CAYNNNNRTG 3 cut(s) 156, 386, 976
SmlI CTYRAG 2 cut(s) 127, 838
SmoI CTYRAG 2 cut(s) 127, 838
Sse9I AATT 8 cut(s) 24, 81, 138, 337, 514, 534, 564, 850
SsiI CCGC 4 cut(s) 857, 881, 886, 920
StyD4I CCNGG 2 cut(s) 657, 897
StyI CCWWGG 1 cut(s) 99
TaaI ACNGT 3 cut(s) 440, 452, 599
TaiI ACGT 1 cut(s) 906
TaqI TCGA 4 cut(s) 608, 633, 705, 729
TasI AATT 8 cut(s) 24, 81, 138, 337, 514, 534, 564, 850
TfiI GAWTC 1 cut(s) 707
Tru1I TTAA 1 cut(s) 537
Tru9I TTAA 1 cut(s) 537
TscAI CASTG 1 cut(s) 457
TseI GCWGC 3 cut(s) 104, 650, 814
TspDTI ATGAA 6 cut(s) 78, 131, 299, 455, 593, 966
TspGWI ACGGA 1 cut(s) 513
TspRI CASTG 1 cut(s) 457
VspI ATTAAT 1 cut(s) 537
XapI RAATTY 5 cut(s) 24, 138, 337, 514, 850
ZraI GACGTC 1 cut(s) 904
Zsp2I ATGCAT 2 cut(s) 153, 393
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.