Rorug07G0209100

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000093
Physical Location & Seq
Reverse (-)
18398778 .. 18405074
6297 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0209100.1

Sequence Viewer

Length: 2889 bp
ATGGATACATCAATTGCCCTTCAGCCTATTACGCAGGAAGCTGTTGATCTGGAGAACATCCCTGTGGAGGAAGTTTTTGAACAATTGAAATGTACAGCAGAGGGTCTCAATTCTGAGGAGGTGCAAAAGCGTCTGGAGGTTTTTGGTTTCAACAAACTTCAAGAGAAAAAGGAAAGTAAAATACTTAACTTTCTGGGGTTTATGTGGAACCCCTTGTCTTGGGTTATGGAAGCAGCTGCACTAATGTCAATAACTCTCGCATATGGAGGCGGAAAAAAAAGAGACGTTGAGGATTTCTGTGGAATCCTAGCACTACTCCTTATCAATTCAACAATAAGCTTTATCGAGGAAAACAATGCTGGAAATGCAGCTGCAGCGCTTATGGCCCGGCTTGCTCCAAAAGCCAAGGTTTTACGCGATGGGAAATGGAATGAGGAAGATGCAGCTGTGCTGGTTCCTGGAGACATTATTAGTATCAAGTTAGGAGATATAATTCCTGCTGATGCTCGCCTGCTTCAAGGAGATCCTTTGAAGATCGACCAGTCTGCTCTTACAGGAGAGTCTCTCCCTGTAACTAAGCATGCCGGTGAAGGAGTATACTCTGGCTCAACATGTAAACAAGGTGAAATTGAAGCAGTTGTCATTGCAACAGGAGTACATACCTTCTTTGGAAAAGCTGCTCATCTTGTGGAAAACACAACACATGTTGGGCACTTTCAGAAGGTCTTAACAGCCATTGGAAACTTTTGCATCTGCTCAATTGCCATAGGTATTGCGATTGAACTAATTGTCCTAGTTCGTCAAGGAAAGAGTTATCGTTCTAAAATAGATAACCTTCTTGTCCTACTTATTGGCGGCATCCCAATTGCTATGCCAACTGTTCTCTCTGTCACCATGGCCATTGGTTCTCATCGTTTGTCTCAGCAGGGTGCAATCACAAAGAGAATGACAGCCATTGAAGAAATGGCTGGGATGGATGTGCTCTGCAGTGATAAAACAGGAACTTTAACTCTCAACAAGTTAACAGTGGACAAGAATCTGATAGAGGTGTTTGCTAAAGATGTTGAAAAAGACTCGGTTGTATTGATGGCTGCAAGAGCTTCAAGGTTGGAAAATCAAGATGCCATTGATGCAGCAATTGTTGCAATGCTGGCTGATTCTAAGGAGGCACGAGAGGGAATTACAGAAGTTCACTTCCTTCCTTTCAATCCAACTGATAAGAGGACAGCACTTACATACCTAGACAAAGCTGGTAAAATGCACAGAGTGAGCAAAGGTGCACCAGAGCAGATACTCAATTTGGCATGGAACAAATCAGATATTGAAAAGAGGGCACACACAGTAATTGACAAATTTGCAGAACGTGGTCTTCGATCCCTTGCTGTTGCACGACAGGAAGTACCCGCTGGAACCAAAGACAGTCCTGGTGGACCTTGGGAGTTTGTTGGTCTTCTACCTTTGTTTGATCCACCACGTCACGACAGTGCTGAAACTATTAGAAGAGCTCTAGATCTTGGTGTGAGTGTTAAGATGATTACAGGCGATCAACTGGCAATTGCCAAAGAGACAGGGAGACGACTTGGGATGGGCTCAAACATGTATCCATCATCTTCATTGCTTGGTGAAAATAAGAATGGCTTAGATGCAAGTCTACAAATTGATGAACTCATTGAGAATGCTGATGGTTTTGCTGGTGTCTTTCCAGAGCATAAATATGAGATCGTTCAGCGATTACAAATTAAGAAGCACATAGTTGGAATGACTGGTGATGGAGTTAATGATGCACCTGCCTTGAAGAAAGCAGACATAGGAATTGCTGTGGCAGATGCCACAGATGCTGCTCGTAGTGCATCTGATATAGTACTGACAGAGCCTGGATTGAGTGTTATTATTAGTGCTGTTCTGACAAGCCGTGCAATCTTTCAAAGAATGAAGAACTACACAATATATGCAGTGTCTATAACAATACGTATTGTGCTTGGTTTCTTGTTGCTAACTGCATTCTGGCGATTTGATTTCCCTCCTTTTATGGTCCTCATCATAGCCATTCTTAATGACGGTACTATTATGACAATATCCAAAGACAAGGTTAAGCCATCTCCAGTTCCTGACAGTTGGAAGCTCAGTGAAATATTTGCAACTGGGATTGTCTTAGGGAGTTACCTTGCCGTGACCACAGCTATATTTTTCTATATCATTTACGAAACCCACTTCTTCCCGAAACACTTCCATCTAGACCTGGACTTCAAGAAACTCGCTGATCTCAATGAGTCGAGTTATACAGAGACACTGAATGGCCAGCTAGCATCTGTTGTGTACCTTCAAGTTAGCACCATCAGCCAGGCTCTAATTTTTGTAACTCGCTCCAGAGGTTGGTCATTCATGGAAAGACCTGGTCTTCTTCTTGTTGGTGCCTTCATAGTTGCTCAAATGGTTGCAACAGTAATATCTGCTCAGGCAACATGGAAATTTGCTCAAATTCATAGCGTTGGCTGGGGTTGGACTGGAGCTGTATGGATTTACAACATTATAATCTATATGCTTCTTGATCCTATCAAGTTTTTTGTGCGATATGCACTCAGTGGGAGGGCCTGGAGTTTGGTACTGAACAAAAGGACGGCTTTCACCACCCAAAAGGACTTTGGTAGGGAAGCTCGTGAGGCTGCATGGGCAACAGAACAGCGTACACTTCATGGCCTCCCAACTATGGACAGAAATATCTTCCATGAGAGGCACACATTCAGGGATGTTAGCATGATGGCTGAAGAAGCCCGACGACGTGCAGAGATTGCAAGACTAAGGGAAATTCACACTCTCAAAGGGAAGGTGGAGTCCTTTGCAAAGCTAAGGGGTTTGGACATTGACGTCAATCCACATTACACAGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

962

Amino Acids

105.86

Weight (kDa)

6.53

Isoelectric Point (pI)

38.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cation_ATPase_N PF00690 19 - 83 2.9e-15 Cation transporter/ATPase, N-terminus
E1-E2_ATPase PF00122 131 - 231 7.3e-31 P-type ATPase actuator domain
Hydrolase PF00702 325 - 602 6.3e-15 haloacid dehalogenase-like hydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000093)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G09490
fragaria_vesca FvH4_1g23791 FvH4_2g01641 FvH4_2g04612 FvH4_2g06831 FvH4_2g07841 FvH4_2g13581 FvH4_2g27220 FvH4_2g30621 FvH4_2g34753 FvH4_3g10392 FvH4_3g24291 FvH4_3g25030 FvH4_3g29361 FvH4_3g31372 FvH4_3g32402 FvH4_3g43651 FvH4_4g03830 FvH4_4g05481 FvH4_4g20431 FvH4_4g21421 FvH4_4g25931 FvH4_5g08801 FvH4_5g21021 FvH4_5g26254 FvH4_5g30931 FvH4_5g31281 FvH4_5g33581 FvH4_5g35622 FvH4_6g02100 FvH4_6g07963 FvH4_6g11620 FvH4_6g16031 FvH4_6g19041 FvH4_6g24211 FvH4_6g24271 FvH4_6g30670 FvH4_6g49540 FvH4_7g25914
malus_domestica MD03G1245200.v1.1 MD04G1168000.v1.1 MD09G1242600.v1.1 MD15G1334000.v1.1 MD17G1165700.v1.1
prunus_persica Prupe.1G073500_v2.0.a1 Prupe.1G283700_v2.0.a1 Prupe.1G524100_v2.0.a1 Prupe.2G022700_v2.0.a1 Prupe.2G022800_v2.0.a1 Prupe.2G022800_v2.0.a1 Prupe.2G044300_v2.0.a1 Prupe.2G048800_v2.0.a1 Prupe.2G092000_v2.0.a1 Prupe.2G216500_v2.0.a1 Prupe.2G216600_v2.0.a1 Prupe.2G216600_v2.0.a1 Prupe.3G103400_v2.0.a1 Prupe.3G143300_v2.0.a1 Prupe.3G190000_v2.0.a1 Prupe.3G219800_v2.0.a1 Prupe.4G177800_v2.0.a1 Prupe.4G261300_v2.0.a1 Prupe.5G044600_v2.0.a1 Prupe.5G067400_v2.0.a1 Prupe.7G083900_v2.0.a1 Prupe.7G120900_v2.0.a1 Prupe.8G032200_v2.0.a1 Prupe.8G036100_v2.0.a1 Prupe.8G042700_v2.0.a1
pyrus_communis pycom01g21710 pycom02g19770 pycom03g05120 pycom05g01370 pycom05g08780 pycom05g10120 pycom07g01370 pycom07g05930 pycom08g15760 pycom08g18090 pycom08g21060 pycom09g03880 pycom10g03870 pycom13g22240 pycom16g05120 pycom16g17170 pycom17g12180 pycom17g16290 pycom17g21230 pycom17g24990 pycom215g00100
rosa_chinensis RchiOBHm_Chr1g0323031 RchiOBHm_Chr1g0324391 RchiOBHm_Chr1g0326401 RchiOBHm_Chr1g0327811 RchiOBHm_Chr1g0332521 RchiOBHm_Chr1g0336501 RchiOBHm_Chr1g0346021 RchiOBHm_Chr1g0347191 RchiOBHm_Chr1g0367181 RchiOBHm_Chr2g0089441 RchiOBHm_Chr2g0115441 RchiOBHm_Chr3g0490691 RchiOBHm_Chr4g0395251 RchiOBHm_Chr4g0398081 RchiOBHm_Chr4g0409451 RchiOBHm_Chr4g0413041 RchiOBHm_Chr4g0415471 RchiOBHm_Chr4g0420961 RchiOBHm_Chr5g0040301 RchiOBHm_Chr5g0070651 RchiOBHm_Chr6g0263011 RchiOBHm_Chr6g0270721 RchiOBHm_Chr6g0277111 RchiOBHm_Chr7g0179771 RchiOBHm_Chr7g0223051 RchiOBHm_Chr7g0225031 RchiOBHm_Chr7g0225091
rosa_laevigata RLG00000001668 RLG00000001672 RLG00000001676 RLG00000007762 RLG00000008994 RLG00000011117 RLG00000013729 RLG00000013839 RLG00000014759 RLG00000016638 RLG00000018535 RLG00000018614 RLG00000018646 RLG00000020679 RLG00000023337 RLG00000029348 RLG00000035891 RLG00000035912
rosa_multiflora Rmu_co8152500.1_g000001 Rmu_co8203314.1_g000001 Rmu_co8383183.1_g000001 Rmu_sc0000293.1_g000033 Rmu_sc0000367.1_g000226 Rmu_sc0000512.1_g000023 Rmu_sc0000594.1_g000059 Rmu_sc0000654.1_g000022 Rmu_sc0000654.1_g000047 Rmu_sc0000706.1_g000037 Rmu_sc0001348.1_g000008 Rmu_sc0001385.1_g000024 Rmu_sc0001405.1_g000002 Rmu_sc0001521.1_g000048 Rmu_sc0001932.1_g000008 Rmu_sc0001932.1_g000009 Rmu_sc0002535.1_g000011 Rmu_sc0002908.1_g000019 Rmu_sc0003709.1_g000004 Rmu_sc0003882.1_g000054 Rmu_sc0004035.1_g000007 Rmu_sc0004041.1_g000007 Rmu_sc0004288.1_g000011 Rmu_sc0004569.1_g000004 Rmu_sc0004677.1_g000016 Rmu_sc0004834.1_g000010 Rmu_sc0005193.1_g000008 Rmu_sc0005354.1_g000009 Rmu_sc0006514.1_g000021 Rmu_sc0006691.1_g000001 Rmu_sc0006888.1_g000021 Rmu_sc0006889.1_g000013 Rmu_sc0008096.1_g000017 Rmu_sc0008378.1_g000003 Rmu_sc0009127.1_g000005 Rmu_sc0009191.1_g000016 Rmu_sc0009687.1_g000018 Rmu_sc0009709.1_g000005 Rmu_sc0009880.1_g000015 Rmu_sc0011710.1_g000001 Rmu_sc0012615.1_g000004 Rmu_sc0016091.1_g000002 Rmu_sc0022339.1_g000006 Rmu_sc0026537.1_g000002 Rmu_sc0027689.1_g000002 Rmu_sc0036222.1_g000001 Rmu_sc0040890.1_g000001 Rmu_ssc0000148.1_g000006 Rmu_ssc0000151.1_g000017 Rmu_ssc0000404.1_g000018 Rmu_ssc0000449.1_g000009
rosa_roxburghii Rroxscaffold_1G00017760 Rroxscaffold_1G00059150 Rroxscaffold_2G00142560 Rroxscaffold_3G00220440 Rroxscaffold_3G00231700 Rroxscaffold_3G00232400 Rroxscaffold_3G00274510 Rroxscaffold_4G00288790 Rroxscaffold_4G00305680 Rroxscaffold_4G00314880 Rroxscaffold_4G00314900 Rroxscaffold_5G00334590 Rroxscaffold_6G00394110 Rroxscaffold_6G00415860 Rroxscaffold_7G00168240 Rroxscaffold_7G00204400 Rroxscaffold_7G00207840
rosa_rugosa Rorug01G0034900 Rorug02G0079500 Rorug02G0229000 Rorug02G0229100 Rorug02G0291400 Rorug02G0298800 Rorug03G0046400 Rorug03G0064700 Rorug03G0077300 Rorug03G0199000 Rorug03G0200400 Rorug04G0205200 Rorug05G0025400 Rorug05G0127400 Rorug05G0192100 Rorug05G0453400 Rorug05G0538300 Rorug06G0035200 Rorug06G0241000 Rorug06G0268300 Rorug07G0120300 Rorug07G0145000 Rorug07G0209100 Rorug07G0240500 Rorug07G0271700
rosa_samantha Rh1AG179100 Rh1BG106900 Rh1BG163400 Rh1BG163500 Rh1BG323500 Rh2CG447900 Rh2DG503700 Rh3AG293600 Rh3CG229100 Rh3DG221500 Rh4AG106000 Rh4BG267700 Rh4CG062500 Rh4CG090100 Rh4CG114800 Rh5AG038400 Rh5BG395400 Rh5CG441700 Rh5CG572000 Rh6AG222400 Rh6AG264500 Rh6BG137400 Rh6BG225700 Rh6CG144300 Rh6DG087600 Rh6DG096000 Rh6DG362400 Rh6DG390200 Rh7AG207500 Rh7AG324700 Rh7AG388800 Rh7AG437100 Rh7BG019000 Rh7BG374600 Rh7CG028700 Rh7CG341500 Rh7CG408000 Rh7CG408300 Rh7DG354600
rosa_wichuraiana Rw0G009630 Rw0G012170 Rw4G022700 Rw5G028420 Rw5G029490 Rw6G007220 Rw6G007410 Rw6G017880 Rw7G012440 Rw7G021830 Rw7G027490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2531
AarI CACCTGC 1 cut(s) 1795
AasI GACNNNNNNGTC 1 cut(s) 2864
AatII GACGTC 1 cut(s) 2868
Acc36I ACCTGC 1 cut(s) 1795
AccB1I GGYRCC 1 cut(s) 2411
AccB7I CCANNNNNTGG 1 cut(s) 2373
AccI GTMKAC 2 cut(s) 597, 1651
AccII CGCG 1 cut(s) 417
AciI CCGC 3 cut(s) 270, 855, 1404
AclWI GGATC 4 cut(s) 518, 1368, 1460, 2543
AcoI YGGCCR 2 cut(s) 897, 2296
AcsI RAATTY 4 cut(s) 1352, 2468, 2478, 2805
AcuI CTGAAG 2 cut(s) 5, 2784
AcyI GRCGYC 1 cut(s) 2865
AdeI CACNNNGTG 2 cut(s) 1267, 2582
AfaI GTAC 8 cut(s) 94, 657, 1401, 1863, 2062, 2318, 2604, 2686
AfeI AGCGCT 1 cut(s) 378
AfiI CCNNNNNNNGG 4 cut(s) 67, 219, 2373, 2707
AflIII ACRYGT 3 cut(s) 611, 703, 1596
AjiI CACGTC 2 cut(s) 1475, 2780
AjnI CCWGG 7 cut(s) 457, 1423, 1873, 2238, 2340, 2392, 2591
AleI CACNNNNGTG 1 cut(s) 1482
AloI GAACNNNNNNTCC 2 cut(s) 774, 806
Alw21I GWGCWC 3 cut(s) 984, 1282, 1507
Alw26I GTCTC 8 cut(s) 110, 276, 456, 567, 924, 1559, 1567, 2279
Alw44I GTGCAC 1 cut(s) 1278
AlwI GGATC 4 cut(s) 518, 1368, 1460, 2543
AlwNI CAGNNNCTG 3 cut(s) 1838, 1874, 2108
Aor51HI AGCGCT 1 cut(s) 378
AoxI GGCC 5 cut(s) 384, 897, 2296, 2589, 2695
ApaLI GTGCAC 1 cut(s) 1278
ApoI RAATTY 4 cut(s) 1352, 2468, 2478, 2805
Asp700I GAANNNNTTC 1 cut(s) 2225
AspLEI GCGC 1 cut(s) 379
AspS9I GGNCC 4 cut(s) 385, 1430, 2032, 2589
AsuC2I CCSGG 1 cut(s) 388
AsuHPI GGTGA 6 cut(s) 599, 635, 883, 1634, 1778, 2617
AsuNHI GCTAGC 1 cut(s) 2302
AvaII GGWCC 2 cut(s) 1430, 2032
BaeGI GKGCMC 3 cut(s) 714, 1282, 1336
BalI TGGCCA 2 cut(s) 899, 2298
BanI GGYRCC 1 cut(s) 2411
BanII GRGCYC 2 cut(s) 1507, 1592
BauI CACGAG 2 cut(s) 1170, 2655
BbsI GAAGAC 3 cut(s) 1361, 1442, 2390
Bbv12I GWGCWC 3 cut(s) 984, 1282, 1507
BceAI ACGGC 3 cut(s) 1896, 2153, 2634
BcgI CGANNNNNNTGC 2 cut(s) 527, 561
BciT130I CCWGG 7 cut(s) 459, 1425, 1875, 2240, 2342, 2394, 2593
BciVI GTATCC 1 cut(s) 1611
BcnI CCSGG 1 cut(s) 388
BcoDI GTCTC 8 cut(s) 110, 276, 456, 567, 924, 1559, 1567, 2279
BfaI CTAG 6 cut(s) 308, 794, 1241, 1508, 2234, 2303
BfmI CTRYAG 2 cut(s) 372, 985
BfoI RGCGCY 1 cut(s) 380
BfuAI ACCTGC 1 cut(s) 1795
BfuI GTATCC 1 cut(s) 1611
BglII AGATCT 1 cut(s) 1510
BmcAI AGTACT 1 cut(s) 1863
Bme1390I CCNGG 8 cut(s) 388, 459, 1425, 1875, 2240, 2342, 2394, 2593
Bme18I GGWCC 2 cut(s) 1430, 2032
BmgBI CACGTC 2 cut(s) 1475, 2780
BmgT120I GGNCC 4 cut(s) 385, 1430, 2032, 2589
BmiI GGNNCC 4 cut(s) 209, 456, 1411, 2413
BmrFI CCNGG 8 cut(s) 388, 459, 1425, 1875, 2240, 2342, 2394, 2593
BmrI ACTGGG 1 cut(s) 2151
BmtI GCTAGC 1 cut(s) 2306
BmuI ACTGGG 1 cut(s) 2151
BpiI GAAGAC 3 cut(s) 1361, 1442, 2390
BplI GAGNNNNNCTC 2 cut(s) 549, 581
BpmI CTGGAG 7 cut(s) 71, 155, 480, 2085, 2350, 2526, 2614
Bpu10I CCTNAGC 2 cut(s) 2454, 2846
BpuMI CCSGG 1 cut(s) 388
BsaAI YACGTR 1 cut(s) 1970
BsaHI GRCGYC 1 cut(s) 2865
BsaI GGTCTC 1 cut(s) 110
BsaJI CCNNGG 3 cut(s) 405, 894, 1433
Bsc4I CCNNNNNNNGG 4 cut(s) 67, 219, 2373, 2707
Bse118I RCCGGY 1 cut(s) 584
Bse1I ACTGG 6 cut(s) 541, 1554, 1768, 2102, 2146, 2509
Bse3DI GCAATG 3 cut(s) 642, 1152, 1613
BseBI CCWGG 7 cut(s) 459, 1425, 1875, 2240, 2342, 2394, 2593
BseDI CCNNGG 3 cut(s) 405, 894, 1433
BseGI GGATG 6 cut(s) 57, 858, 978, 982, 1590, 2752
BseLI CCNNNNNNNGG 4 cut(s) 67, 219, 2373, 2707
BseMI GCAATG 3 cut(s) 642, 1152, 1613
BseMII CTCAG 5 cut(s) 105, 935, 2137, 2468, 2593
BseNI ACTGG 6 cut(s) 541, 1554, 1768, 2102, 2146, 2509
BseRI GAGGAG 1 cut(s) 131
BseSI GKGCMC 3 cut(s) 714, 1282, 1336
BseYI CCCAGC 2 cut(s) 968, 2493
BsgI GTGCAG 2 cut(s) 222, 2802
Bsh1236I CGCG 1 cut(s) 417
BshFI GGCC 5 cut(s) 386, 899, 2298, 2591, 2697
BshNI GGYRCC 1 cut(s) 2411
BsiHKAI GWGCWC 3 cut(s) 984, 1282, 1507
BsiSI CCGG 2 cut(s) 388, 585
BslI CCNNNNNNNGG 4 cut(s) 67, 219, 2373, 2707
BsmAI GTCTC 8 cut(s) 110, 276, 456, 567, 924, 1559, 1567, 2279
BsmBI CGTCTC 2 cut(s) 276, 1567
BsmI GAATGC 2 cut(s) 1681, 2000
BsnI GGCC 5 cut(s) 386, 899, 2298, 2591, 2697
Bso31I GGTCTC 1 cut(s) 110
Bsp1286I GDGCHC 6 cut(s) 714, 984, 1282, 1336, 1507, 1592
Bsp1407I TGTACA 1 cut(s) 92
Bsp19I CCATGG 1 cut(s) 894
BspACI CCGC 3 cut(s) 270, 855, 1404
BspANI GGCC 5 cut(s) 386, 899, 2298, 2591, 2697
BspCNI CTCAG 5 cut(s) 106, 934, 2136, 2467, 2592
BspFNI CGCG 1 cut(s) 417
BspLI GGNNCC 4 cut(s) 209, 456, 1411, 2413
BspMAI CTGCAG 2 cut(s) 376, 989
BspMI ACCTGC 1 cut(s) 1795
BspOI GCTAGC 1 cut(s) 2306
BspPI GGATC 4 cut(s) 518, 1368, 1460, 2543
BspQI GCTCTTC 1 cut(s) 1495
BspT107I GGYRCC 1 cut(s) 2411
BspTNI GGTCTC 1 cut(s) 110
BsrDI GCAATG 3 cut(s) 642, 1152, 1613
BsrFI RCCGGY 1 cut(s) 584
BsrGI TGTACA 1 cut(s) 92
BsrI ACTGG 6 cut(s) 541, 1554, 1768, 2102, 2146, 2509
BssAI RCCGGY 1 cut(s) 584
BssECI CCNNGG 3 cut(s) 405, 894, 1433
BssNAI GTATAC 1 cut(s) 598
BssNI GRCGYC 1 cut(s) 2865
BssSI CACGAG 2 cut(s) 1170, 2655
BssT1I CCWWGG 3 cut(s) 405, 894, 1433
Bst1107I GTATAC 1 cut(s) 598
Bst2BI CACGAG 2 cut(s) 1170, 2655
Bst2UI CCWGG 7 cut(s) 459, 1425, 1875, 2240, 2342, 2394, 2593
Bst4CI ACNGT 9 cut(s) 880, 1027, 1342, 1421, 1484, 2060, 2114, 2443, 2884
Bst6I CTCTTC 1 cut(s) 1495
BstACI GRCGYC 1 cut(s) 2865
BstAPI GCANNNNNTGC 2 cut(s) 1142, 2789
BstAUI TGTACA 1 cut(s) 92
BstBAI YACGTR 1 cut(s) 1970
BstC8I GCNNGC 7 cut(s) 393, 508, 512, 582, 1152, 2300, 2304
BstDSI CCRYGG 1 cut(s) 894
BstF5I GGATG 6 cut(s) 57, 858, 978, 982, 1590, 2752
BstFNI CGCG 1 cut(s) 417
BstH2I RGCGCY 1 cut(s) 380
BstHHI GCGC 1 cut(s) 379
BstMAI GTCTC 8 cut(s) 110, 276, 456, 567, 924, 1559, 1567, 2279
BstNI CCWGG 7 cut(s) 459, 1425, 1875, 2240, 2342, 2394, 2593
BstNSI RCATGY 4 cut(s) 584, 615, 707, 1600
BstSCI CCNGG 8 cut(s) 386, 457, 1423, 1873, 2238, 2340, 2392, 2591
BstSFI CTRYAG 2 cut(s) 372, 985
BstSLI GKGCMC 3 cut(s) 714, 1282, 1336
BstSNI TACGTA 1 cut(s) 1970
BstUI CGCG 1 cut(s) 417
BstV2I GAAGAC 3 cut(s) 1361, 1442, 2390
BstX2I RGATCY 2 cut(s) 523, 1510
BstYI RGATCY 2 cut(s) 523, 1510
BstZ17I GTATAC 1 cut(s) 598
BsuI GTATCC 1 cut(s) 1611
BsuRI GGCC 5 cut(s) 386, 899, 2298, 2591, 2697
BtgI CCRYGG 1 cut(s) 894
BtgZI GCGATG 1 cut(s) 432
BtrI CACGTC 2 cut(s) 1475, 2780
BtsCI GGATG 6 cut(s) 57, 858, 978, 982, 1590, 2752
BtsI GCAGTG 2 cut(s) 994, 1959
BtsIMutI CAGTG 7 cut(s) 994, 1032, 1489, 1959, 2131, 2288, 2587
BveI ACCTGC 1 cut(s) 1795
Cac8I GCNNGC 7 cut(s) 393, 508, 512, 582, 1152, 2300, 2304
CaiI CAGNNNCTG 3 cut(s) 1838, 1874, 2108
CfoI GCGC 1 cut(s) 379
Cfr10I RCCGGY 1 cut(s) 584
Cfr13I GGNCC 4 cut(s) 385, 1430, 2032, 2589
CseI GACGC 1 cut(s) 119
CsiI ACCWGGT 1 cut(s) 2392
Csp6I GTAC 8 cut(s) 93, 656, 1400, 1862, 2061, 2317, 2603, 2685
CviQI GTAC 8 cut(s) 93, 656, 1400, 1862, 2061, 2317, 2603, 2685
DraIII CACNNNGTG 2 cut(s) 1267, 2582
DrdI GACNNNNNNGTC 1 cut(s) 2864
DseDI GACNNNNNNGTC 1 cut(s) 2864
EaeI YGGCCR 2 cut(s) 897, 2296
Eam1104I CTCTTC 1 cut(s) 1495
EarI CTCTTC 1 cut(s) 1495
EciI GGCGGA 1 cut(s) 285
Ecl136II GAGCTC 1 cut(s) 1505
Eco105I TACGTA 1 cut(s) 1970
Eco130I CCWWGG 3 cut(s) 405, 894, 1433
Eco24I GRGCYC 2 cut(s) 1507, 1592
Eco31I GGTCTC 1 cut(s) 110
Eco47I GGWCC 2 cut(s) 1430, 2032
Eco47III AGCGCT 1 cut(s) 378
Eco53kI GAGCTC 1 cut(s) 1505
Eco57I CTGAAG 2 cut(s) 5, 2784
EcoICRI GAGCTC 1 cut(s) 1505
EcoO109I RGGNCCY 1 cut(s) 2589
EcoRII CCWGG 7 cut(s) 457, 1423, 1873, 2238, 2340, 2392, 2591
EcoT14I CCWWGG 3 cut(s) 405, 894, 1433
EcoT38I GRGCYC 2 cut(s) 1507, 1592
ErhI CCWWGG 3 cut(s) 405, 894, 1433
Esp3I CGTCTC 2 cut(s) 276, 1567
FalI AAGNNNNNCTT 4 cut(s) 1622, 1654, 2605, 2637
FauI CCCGC 1 cut(s) 1411
FauNDI CATATG 1 cut(s) 262
FblI GTMKAC 2 cut(s) 597, 1651
FokI GGATG 6 cut(s) 44, 845, 985, 989, 1597, 2759
FriOI GRGCYC 2 cut(s) 1507, 1592
FspBI CTAG 6 cut(s) 308, 794, 1241, 1508, 2234, 2303
GlaI GCGC 1 cut(s) 378
GsaI CCCAGC 2 cut(s) 972, 2497
GsuI CTGGAG 7 cut(s) 71, 155, 480, 2085, 2350, 2526, 2614
HaeII RGCGCY 1 cut(s) 380
HaeIII GGCC 5 cut(s) 386, 899, 2298, 2591, 2697
HapII CCGG 2 cut(s) 388, 585
HgaI GACGC 1 cut(s) 119
HhaI GCGC 1 cut(s) 379
Hin1I GRCGYC 1 cut(s) 2865
Hin6I GCGC 1 cut(s) 377
HinP1I GCGC 1 cut(s) 377
HincII GTYRAC 1 cut(s) 1023
HindII GTYRAC 1 cut(s) 1023
HindIII AAGCTT 1 cut(s) 337
HinfI GANTC 7 cut(s) 303, 560, 1036, 1073, 1157, 2270, 2831
HpaI GTTAAC 1 cut(s) 1023
HpaII CCGG 2 cut(s) 388, 585
HphI GGTGA 6 cut(s) 599, 635, 883, 1634, 1778, 2617
Hpy188I TCNGA 6 cut(s) 115, 720, 1041, 1318, 1855, 1905
Hpy99I CGWCG 2 cut(s) 2778, 2781
HpyAV CCTTC 9 cut(s) 29, 584, 673, 715, 845, 1208, 2330, 2425, 2818
HpyCH4III ACNGT 9 cut(s) 880, 1027, 1342, 1421, 1484, 2060, 2114, 2443, 2884
HpyCH4IV ACGT 6 cut(s) 285, 1363, 1474, 1969, 2779, 2865
HpySE526I ACGT 6 cut(s) 285, 1363, 1474, 1969, 2779, 2865
Hsp92I GRCGYC 1 cut(s) 2865
HspAI GCGC 1 cut(s) 377
KspAI GTTAAC 1 cut(s) 1023
LguI GCTCTTC 1 cut(s) 1495
LmnI GCTCC 3 cut(s) 400, 2369, 2507
MabI ACCWGGT 1 cut(s) 2392
MaeI CTAG 6 cut(s) 308, 794, 1241, 1508, 2234, 2303
MaeII ACGT 6 cut(s) 285, 1363, 1474, 1969, 2779, 2865
MaeIII GTNAC 6 cut(s) 571, 889, 1475, 2159, 2170, 2356
MfeI CAATTG 6 cut(s) 12, 83, 759, 864, 1137, 1554
MflI RGATCY 2 cut(s) 523, 1510
MhlI GDGCHC 6 cut(s) 714, 984, 1282, 1336, 1507, 1592
MlsI TGGCCA 2 cut(s) 899, 2298
MluNI TGGCCA 2 cut(s) 899, 2298
MlyI GAGTC 4 cut(s) 569, 1067, 2279, 2840
MmeI TCCRAC 5 cut(s) 1089, 1235, 1735, 2096, 2480
Mox20I TGGCCA 2 cut(s) 899, 2298
MroXI GAANNNNTTC 1 cut(s) 2225
MscI TGGCCA 2 cut(s) 899, 2298
MseI TTAA 9 cut(s) 186, 728, 1007, 1022, 1527, 1740, 1776, 2052, 2091
MslI CAYNNNNRTG 4 cut(s) 62, 585, 1482, 1713
Msp20I TGGCCA 2 cut(s) 899, 2298
MspA1I CMGCKG 4 cut(s) 236, 371, 446, 1406
MspI CCGG 2 cut(s) 388, 585
MspR9I CCNGG 8 cut(s) 388, 459, 1425, 1875, 2240, 2342, 2394, 2593
MunI CAATTG 6 cut(s) 12, 83, 759, 864, 1137, 1554
Mva1269I GAATGC 2 cut(s) 1681, 2000
MvaI CCWGG 7 cut(s) 459, 1425, 1875, 2240, 2342, 2394, 2593
MvnI CGCG 1 cut(s) 417
NciI CCSGG 1 cut(s) 388
NcoI CCATGG 1 cut(s) 894
NdeI CATATG 1 cut(s) 262
NheI GCTAGC 1 cut(s) 2302
NlaIV GGNNCC 4 cut(s) 209, 456, 1411, 2413
NmuCI GTSAC 3 cut(s) 889, 1475, 2170
NspI RCATGY 4 cut(s) 584, 615, 707, 1600
OliI CACNNNNGTG 1 cut(s) 1482
PaeI GCATGC 1 cut(s) 584
PaqCI CACCTGC 1 cut(s) 1795
PciI ACATGT 3 cut(s) 611, 703, 1596
PciSI GCTCTTC 1 cut(s) 1495
PcsI WCGNNNNNNNCGW 1 cut(s) 1369
PctI GAATGC 2 cut(s) 1681, 2000
PdmI GAANNNNTTC 1 cut(s) 2225
PfeI GAWTC 3 cut(s) 303, 1036, 1157
PflFI GACNNNGTC 1 cut(s) 2394
PflMI CCANNNNNTGG 1 cut(s) 2373
PfoI TCCNGGA 1 cut(s) 457
PleI GAGTC 4 cut(s) 568, 1067, 2278, 2839
PpsI GAGTC 4 cut(s) 568, 1067, 2278, 2839
Ppu21I YACGTR 1 cut(s) 1970
PscI ACATGT 3 cut(s) 611, 703, 1596
PsiI TTATAA 1 cut(s) 2531
Psp124BI GAGCTC 1 cut(s) 1507
Psp6I CCWGG 7 cut(s) 457, 1423, 1873, 2238, 2340, 2392, 2591
PspFI CCCAGC 2 cut(s) 968, 2493
PspGI CCWGG 7 cut(s) 457, 1423, 1873, 2238, 2340, 2392, 2591
PspN4I GGNNCC 4 cut(s) 209, 456, 1411, 2413
PspPI GGNCC 4 cut(s) 385, 1430, 2032, 2589
PstI CTGCAG 2 cut(s) 376, 989
PstNI CAGNNNCTG 3 cut(s) 1838, 1874, 2108
PsuI RGATCY 2 cut(s) 523, 1510
PsyI GACNNNGTC 1 cut(s) 2394
PvuII CAGCTG 3 cut(s) 236, 371, 446
RsaI GTAC 8 cut(s) 94, 657, 1401, 1863, 2062, 2318, 2604, 2686
RsaNI GTAC 8 cut(s) 93, 656, 1400, 1862, 2061, 2317, 2603, 2685
RseI CAYNNNNRTG 4 cut(s) 62, 585, 1482, 1713
SacI GAGCTC 1 cut(s) 1507
SapI GCTCTTC 1 cut(s) 1495
SaqAI TTAA 9 cut(s) 186, 728, 1007, 1022, 1527, 1740, 1776, 2052, 2091
Sau96I GGNCC 4 cut(s) 385, 1430, 2032, 2589
ScaI AGTACT 1 cut(s) 1863
SchI GAGTC 4 cut(s) 569, 1067, 2279, 2840
ScrFI CCNGG 8 cut(s) 388, 459, 1425, 1875, 2240, 2342, 2394, 2593
SduI GDGCHC 6 cut(s) 714, 984, 1282, 1336, 1507, 1592
SexAI ACCWGGT 1 cut(s) 2392
SfcI CTRYAG 2 cut(s) 372, 985
SinI GGWCC 2 cut(s) 1430, 2032
SmiMI CAYNNNNRTG 4 cut(s) 62, 585, 1482, 1713
SnaBI TACGTA 1 cut(s) 1970
SphI GCATGC 1 cut(s) 584
SsiI CCGC 3 cut(s) 270, 855, 1404
SspI AATATT 1 cut(s) 2133
SspMI CTAG 6 cut(s) 308, 794, 1241, 1508, 2234, 2303
SstI GAGCTC 1 cut(s) 1507
StyD4I CCNGG 8 cut(s) 386, 457, 1423, 1873, 2238, 2340, 2392, 2591
StyI CCWWGG 3 cut(s) 405, 894, 1433
TaaI ACNGT 9 cut(s) 880, 1027, 1342, 1421, 1484, 2060, 2114, 2443, 2884
TaiI ACGT 6 cut(s) 288, 1366, 1477, 1972, 2782, 2868
TaqI TCGA 4 cut(s) 345, 537, 1372, 2273
TatI WGTACW 3 cut(s) 92, 655, 1861
TauI GCSGC 1 cut(s) 858
TfiI GAWTC 3 cut(s) 303, 1036, 1157
Tru1I TTAA 9 cut(s) 186, 728, 1007, 1022, 1527, 1740, 1776, 2052, 2091
Tru9I TTAA 9 cut(s) 186, 728, 1007, 1022, 1527, 1740, 1776, 2052, 2091
TscAI CASTG 7 cut(s) 994, 1032, 1489, 1959, 2131, 2295, 2587
TseFI GTSAC 3 cut(s) 889, 1475, 2170
Tsp45I GTSAC 3 cut(s) 889, 1475, 2170
TspDTI ATGAA 7 cut(s) 1602, 1677, 1946, 2371, 2407, 2471, 2681
TspRI CASTG 7 cut(s) 994, 1032, 1489, 1959, 2131, 2295, 2587
Tth111I GACNNNGTC 1 cut(s) 2394
Van91I CCANNNNNTGG 1 cut(s) 2373
VneI GTGCAC 1 cut(s) 1278
VpaK11BI GGWCC 2 cut(s) 1430, 2032
XapI RAATTY 4 cut(s) 1352, 2468, 2478, 2805
XbaI TCTAGA 2 cut(s) 1507, 2233
XceI RCATGY 4 cut(s) 584, 615, 707, 1600
XcmI CCANNNNNNNNNTGG 2 cut(s) 961, 2639
XmiI GTMKAC 2 cut(s) 597, 1651
XmnI GAANNNNTTC 1 cut(s) 2225
XspI CTAG 6 cut(s) 308, 794, 1241, 1508, 2234, 2303
ZraI GACGTC 1 cut(s) 2866
ZrmI AGTACT 1 cut(s) 1863
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.