ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| zf-RVT | PF13966 | 2 - 54 | 5.2e-13 | zinc-binding in reverse transcriptase |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 63 |
| AcoI | YGGCCR | 1 cut(s) | 208 |
| AcsI | RAATTY | 1 cut(s) | 9 |
| AfaI | GTAC | 1 cut(s) | 262 |
| AflIII | ACRYGT | 1 cut(s) | 70 |
| AjnI | CCWGG | 1 cut(s) | 47 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 113, 145 |
| AluBI | AGCT | 1 cut(s) | 38 |
| AluI | AGCT | 1 cut(s) | 38 |
| Alw21I | GWGCWC | 1 cut(s) | 40 |
| Alw26I | GTCTC | 1 cut(s) | 85 |
| AlwI | GGATC | 1 cut(s) | 63 |
| AoxI | GGCC | 1 cut(s) | 208 |
| ApeKI | GCWGC | 1 cut(s) | 215 |
| ApoI | RAATTY | 1 cut(s) | 9 |
| AseI | ATTAAT | 1 cut(s) | 201 |
| BalI | TGGCCA | 1 cut(s) | 210 |
| BanII | GRGCYC | 1 cut(s) | 40 |
| Bbv12I | GWGCWC | 1 cut(s) | 40 |
| BbvI | GCAGC | 1 cut(s) | 202 |
| BciT130I | CCWGG | 1 cut(s) | 49 |
| BclI | TGATCA | 1 cut(s) | 3 |
| BcoDI | GTCTC | 1 cut(s) | 85 |
| BisI | GCNGC | 1 cut(s) | 216 |
| BlsI | GCNGC | 1 cut(s) | 217 |
| Bme1390I | CCNGG | 1 cut(s) | 49 |
| BmrFI | CCNGG | 1 cut(s) | 49 |
| BsaJI | CCNNGG | 1 cut(s) | 143 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 113, 143 |
| BseBI | CCWGG | 1 cut(s) | 49 |
| BseDI | CCNNGG | 1 cut(s) | 143 |
| BseRI | GAGGAG | 1 cut(s) | 122 |
| BseXI | GCAGC | 1 cut(s) | 202 |
| BshFI | GGCC | 1 cut(s) | 210 |
| BsiHKAI | GWGCWC | 1 cut(s) | 40 |
| BsmAI | GTCTC | 1 cut(s) | 85 |
| BsnI | GGCC | 1 cut(s) | 210 |
| Bsp1286I | GDGCHC | 1 cut(s) | 40 |
| Bsp143I | GATC | 3 cut(s) | 3, 55, 239 |
| BspANI | GGCC | 1 cut(s) | 210 |
| BspPI | GGATC | 1 cut(s) | 63 |
| BssECI | CCNNGG | 1 cut(s) | 143 |
| BssMI | GATC | 3 cut(s) | 3, 55, 239 |
| Bst2UI | CCWGG | 1 cut(s) | 49 |
| BstDSI | CCRYGG | 1 cut(s) | 143 |
| BstKTI | GATC | 3 cut(s) | 6, 58, 242 |
| BstMAI | GTCTC | 1 cut(s) | 85 |
| BstMBI | GATC | 3 cut(s) | 3, 55, 239 |
| BstNI | CCWGG | 1 cut(s) | 49 |
| BstNSI | RCATGY | 1 cut(s) | 74 |
| BstSCI | CCNGG | 1 cut(s) | 47 |
| BstV1I | GCAGC | 1 cut(s) | 202 |
| BstX2I | RGATCY | 1 cut(s) | 55 |
| BstYI | RGATCY | 1 cut(s) | 55 |
| BsuRI | GGCC | 1 cut(s) | 210 |
| BtgI | CCRYGG | 1 cut(s) | 143 |
| CsiI | ACCWGGT | 1 cut(s) | 47 |
| Csp6I | GTAC | 1 cut(s) | 261 |
| CviAII | CATG | 5 cut(s) | 16, 71, 212, 223, 257 |
| CviJI | RGCY | 4 cut(s) | 38, 154, 210, 230 |
| CviKI_1 | RGCY | 4 cut(s) | 38, 154, 210, 230 |
| CviQI | GTAC | 1 cut(s) | 261 |
| DpnI | GATC | 3 cut(s) | 5, 57, 241 |
| DpnII | GATC | 3 cut(s) | 3, 55, 239 |
| DraI | TTTAAA | 1 cut(s) | 64 |
| EaeI | YGGCCR | 1 cut(s) | 208 |
| Ecl136II | GAGCTC | 1 cut(s) | 38 |
| Eco24I | GRGCYC | 1 cut(s) | 40 |
| Eco53kI | GAGCTC | 1 cut(s) | 38 |
| EcoICRI | GAGCTC | 1 cut(s) | 38 |
| EcoRII | CCWGG | 1 cut(s) | 47 |
| EcoT38I | GRGCYC | 1 cut(s) | 40 |
| FaeI | CATG | 5 cut(s) | 19, 74, 215, 226, 260 |
| FaiI | YATR | 9 cut(s) | 17, 33, 72, 98, 100, 195, 213, 224, 258 |
| FatI | CATG | 5 cut(s) | 15, 70, 211, 222, 256 |
| FbaI | TGATCA | 1 cut(s) | 3 |
| Fnu4HI | GCNGC | 1 cut(s) | 216 |
| FriOI | GRGCYC | 1 cut(s) | 40 |
| Fsp4HI | GCNGC | 1 cut(s) | 216 |
| GluI | GCNGC | 1 cut(s) | 216 |
| HaeIII | GGCC | 1 cut(s) | 210 |
| Hin1II | CATG | 5 cut(s) | 19, 74, 215, 226, 260 |
| HincII | GTYRAC | 1 cut(s) | 173 |
| HindII | GTYRAC | 1 cut(s) | 173 |
| HinfI | GANTC | 2 cut(s) | 24, 113 |
| Hpy166II | GTNNAC | 1 cut(s) | 173 |
| Hpy188I | TCNGA | 1 cut(s) | 8 |
| Hpy188III | TCNNGA | 1 cut(s) | 41 |
| Hpy8I | GTNNAC | 1 cut(s) | 173 |
| HpyAV | CCTTC | 1 cut(s) | 38 |
| Hsp92II | CATG | 5 cut(s) | 19, 74, 215, 226, 260 |
| Ksp22I | TGATCA | 1 cut(s) | 3 |
| Kzo9I | GATC | 3 cut(s) | 3, 55, 239 |
| LmnI | GCTCC | 1 cut(s) | 121 |
| LpnPI | CCDG | 5 cut(s) | 26, 34, 61, 145, 168 |
| Lsp1109I | GCAGC | 1 cut(s) | 202 |
| MabI | ACCWGGT | 1 cut(s) | 47 |
| MalI | GATC | 3 cut(s) | 5, 57, 241 |
| MboI | GATC | 3 cut(s) | 3, 55, 239 |
| MflI | RGATCY | 1 cut(s) | 55 |
| MhlI | GDGCHC | 1 cut(s) | 40 |
| MlsI | TGGCCA | 1 cut(s) | 210 |
| MluCI | AATT | 4 cut(s) | 9, 178, 189, 202 |
| MluNI | TGGCCA | 1 cut(s) | 210 |
| MmeI | TCCRAC | 1 cut(s) | 33 |
| MnlI | CCTC | 4 cut(s) | 100, 103, 161, 220 |
| Mox20I | TGGCCA | 1 cut(s) | 210 |
| MscI | TGGCCA | 1 cut(s) | 210 |
| MseI | TTAA | 3 cut(s) | 63, 177, 201 |
| Msp20I | TGGCCA | 1 cut(s) | 210 |
| MspR9I | CCNGG | 1 cut(s) | 49 |
| MvaI | CCWGG | 1 cut(s) | 49 |
| NdeII | GATC | 3 cut(s) | 3, 55, 239 |
| NlaIII | CATG | 5 cut(s) | 19, 74, 215, 226, 260 |
| NspI | RCATGY | 1 cut(s) | 74 |
| PciI | ACATGT | 1 cut(s) | 70 |
| PfeI | GAWTC | 2 cut(s) | 24, 113 |
| PkrI | GCNGC | 1 cut(s) | 217 |
| PscI | ACATGT | 1 cut(s) | 70 |
| PshBI | ATTAAT | 1 cut(s) | 201 |
| Psp124BI | GAGCTC | 1 cut(s) | 40 |
| Psp6I | CCWGG | 1 cut(s) | 47 |
| PspGI | CCWGG | 1 cut(s) | 47 |
| PsuI | RGATCY | 1 cut(s) | 55 |
| RsaI | GTAC | 1 cut(s) | 262 |
| RsaNI | GTAC | 1 cut(s) | 261 |
| SacI | GAGCTC | 1 cut(s) | 40 |
| SaqAI | TTAA | 3 cut(s) | 63, 177, 201 |
| SatI | GCNGC | 1 cut(s) | 216 |
| Sau3AI | GATC | 3 cut(s) | 3, 55, 239 |
| ScrFI | CCNGG | 1 cut(s) | 49 |
| SduI | GDGCHC | 1 cut(s) | 40 |
| SetI | ASST | 4 cut(s) | 40, 53, 172, 189 |
| SexAI | ACCWGGT | 1 cut(s) | 47 |
| Sse9I | AATT | 4 cut(s) | 9, 178, 189, 202 |
| SstI | GAGCTC | 1 cut(s) | 40 |
| StyD4I | CCNGG | 1 cut(s) | 47 |
| TasI | AATT | 4 cut(s) | 9, 178, 189, 202 |
| TfiI | GAWTC | 2 cut(s) | 24, 113 |
| Tru1I | TTAA | 3 cut(s) | 63, 177, 201 |
| Tru9I | TTAA | 3 cut(s) | 63, 177, 201 |
| TseI | GCWGC | 1 cut(s) | 215 |
| TspDTI | ATGAA | 5 cut(s) | 4, 20, 182, 211, 245 |
| TspGWI | ACGGA | 1 cut(s) | 132 |
| VspI | ATTAAT | 1 cut(s) | 201 |
| XapI | RAATTY | 1 cut(s) | 9 |
| XceI | RCATGY | 1 cut(s) | 74 |