ribonuclease H protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 57 |
| AccI | GTMKAC | 1 cut(s) | 301 |
| AciI | CCGC | 1 cut(s) | 115 |
| AcsI | RAATTY | 1 cut(s) | 690 |
| AfaI | GTAC | 2 cut(s) | 226, 498 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 104, 270 |
| AgsI | TTSAA | 2 cut(s) | 185, 524 |
| AhlI | ACTAGT | 1 cut(s) | 638 |
| AjnI | CCWGG | 1 cut(s) | 663 |
| AluBI | AGCT | 4 cut(s) | 203, 314, 492, 557 |
| AluI | AGCT | 4 cut(s) | 203, 314, 492, 557 |
| AoxI | GGCC | 3 cut(s) | 210, 254, 700 |
| ApoI | RAATTY | 1 cut(s) | 690 |
| AspS9I | GGNCC | 1 cut(s) | 631 |
| AsuHPI | GGTGA | 4 cut(s) | 102, 161, 347, 461 |
| AsuII | TTCGAA | 1 cut(s) | 155 |
| AvaII | GGWCC | 1 cut(s) | 631 |
| BanI | GGYRCC | 1 cut(s) | 57 |
| BanII | GRGCYC | 1 cut(s) | 546 |
| BbsI | GAAGAC | 1 cut(s) | 327 |
| BccI | CCATC | 3 cut(s) | 188, 499, 605 |
| BciT130I | CCWGG | 1 cut(s) | 665 |
| BcuI | ACTAGT | 1 cut(s) | 638 |
| BfaI | CTAG | 3 cut(s) | 122, 317, 639 |
| Bme1390I | CCNGG | 1 cut(s) | 665 |
| Bme18I | GGWCC | 1 cut(s) | 631 |
| BmgT120I | GGNCC | 1 cut(s) | 631 |
| BmiI | GGNNCC | 1 cut(s) | 59 |
| BmrFI | CCNGG | 1 cut(s) | 665 |
| BmsI | GCATC | 2 cut(s) | 355, 499 |
| BpiI | GAAGAC | 1 cut(s) | 327 |
| Bpu14I | TTCGAA | 1 cut(s) | 155 |
| BsaBI | GATNNNNATC | 1 cut(s) | 650 |
| BsaJI | CCNNGG | 2 cut(s) | 465, 627 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 104, 270 |
| Bse1I | ACTGG | 2 cut(s) | 437, 506 |
| Bse3DI | GCAATG | 1 cut(s) | 75 |
| Bse8I | GATNNNNATC | 1 cut(s) | 650 |
| BseBI | CCWGG | 1 cut(s) | 665 |
| BseDI | CCNNGG | 2 cut(s) | 465, 627 |
| BseGI | GGATG | 5 cut(s) | 83, 247, 279, 510, 514 |
| BseJI | GATNNNNATC | 1 cut(s) | 650 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 104, 270 |
| BseMI | GCAATG | 1 cut(s) | 75 |
| BseMII | CTCAG | 3 cut(s) | 120, 324, 582 |
| BseNI | ACTGG | 2 cut(s) | 437, 506 |
| BseRI | GAGGAG | 2 cut(s) | 251, 340 |
| BshFI | GGCC | 3 cut(s) | 212, 256, 702 |
| BshNI | GGYRCC | 1 cut(s) | 57 |
| BslFI | GGGAC | 1 cut(s) | 561 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 104, 270 |
| BsmFI | GGGAC | 1 cut(s) | 561 |
| BsnI | GGCC | 3 cut(s) | 212, 256, 702 |
| Bsp119I | TTCGAA | 1 cut(s) | 155 |
| Bsp1286I | GDGCHC | 1 cut(s) | 546 |
| Bsp1407I | TGTACA | 1 cut(s) | 496 |
| Bsp143I | GATC | 1 cut(s) | 249 |
| Bsp19I | CCATGG | 1 cut(s) | 465 |
| BspACI | CCGC | 1 cut(s) | 115 |
| BspANI | GGCC | 3 cut(s) | 212, 256, 702 |
| BspCNI | CTCAG | 3 cut(s) | 121, 323, 583 |
| BspLI | GGNNCC | 1 cut(s) | 59 |
| BspQI | GCTCTTC | 1 cut(s) | 388 |
| BspT104I | TTCGAA | 1 cut(s) | 155 |
| BspT107I | GGYRCC | 1 cut(s) | 57 |
| BsrDI | GCAATG | 1 cut(s) | 75 |
| BsrGI | TGTACA | 1 cut(s) | 496 |
| BsrI | ACTGG | 2 cut(s) | 437, 506 |
| BssECI | CCNNGG | 2 cut(s) | 465, 627 |
| BssMI | GATC | 1 cut(s) | 249 |
| BssT1I | CCWWGG | 2 cut(s) | 465, 627 |
| Bst2UI | CCWGG | 1 cut(s) | 665 |
| Bst4CI | ACNGT | 2 cut(s) | 229, 299 |
| Bst6I | CTCTTC | 3 cut(s) | 388, 519, 588 |
| BstAUI | TGTACA | 1 cut(s) | 496 |
| BstBI | TTCGAA | 1 cut(s) | 155 |
| BstC8I | GCNNGC | 2 cut(s) | 119, 341 |
| BstDEI | CTNAG | 4 cut(s) | 129, 310, 424, 591 |
| BstDSI | CCRYGG | 1 cut(s) | 465 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 102 |
| BstF5I | GGATG | 5 cut(s) | 83, 247, 279, 510, 514 |
| BstKTI | GATC | 1 cut(s) | 252 |
| BstMBI | GATC | 1 cut(s) | 249 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 209 |
| BstNI | CCWGG | 1 cut(s) | 665 |
| BstSCI | CCNGG | 1 cut(s) | 663 |
| BstV2I | GAAGAC | 1 cut(s) | 327 |
| BsuRI | GGCC | 3 cut(s) | 212, 256, 702 |
| BtgI | CCRYGG | 1 cut(s) | 465 |
| BtsCI | GGATG | 5 cut(s) | 83, 247, 279, 510, 514 |
| BtsIMutI | CAGTG | 2 cut(s) | 234, 499 |
| Cac8I | GCNNGC | 2 cut(s) | 119, 341 |
| Cfr13I | GGNCC | 1 cut(s) | 631 |
| Csp6I | GTAC | 2 cut(s) | 225, 497 |
| CviAII | CATG | 2 cut(s) | 439, 466 |
| CviQI | GTAC | 2 cut(s) | 225, 497 |
| DdeI | CTNAG | 4 cut(s) | 129, 310, 424, 591 |
| DpnI | GATC | 1 cut(s) | 251 |
| DpnII | GATC | 1 cut(s) | 249 |
| Eam1104I | CTCTTC | 3 cut(s) | 388, 519, 588 |
| EarI | CTCTTC | 3 cut(s) | 388, 519, 588 |
| Eco130I | CCWWGG | 2 cut(s) | 465, 627 |
| Eco24I | GRGCYC | 1 cut(s) | 546 |
| Eco47I | GGWCC | 1 cut(s) | 631 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 102 |
| EcoRII | CCWGG | 1 cut(s) | 663 |
| EcoT14I | CCWWGG | 2 cut(s) | 465, 627 |
| EcoT38I | GRGCYC | 1 cut(s) | 546 |
| ErhI | CCWWGG | 2 cut(s) | 465, 627 |
| FaeI | CATG | 2 cut(s) | 442, 469 |
| FaiI | YATR | 4 cut(s) | 396, 440, 467, 495 |
| FaqI | GGGAC | 1 cut(s) | 561 |
| FatI | CATG | 2 cut(s) | 438, 465 |
| FauI | CCCGC | 1 cut(s) | 122 |
| FblI | GTMKAC | 1 cut(s) | 301 |
| FokI | GGATG | 5 cut(s) | 70, 254, 286, 517, 521 |
| FriOI | GRGCYC | 1 cut(s) | 546 |
| FspBI | CTAG | 3 cut(s) | 122, 317, 639 |
| HaeIII | GGCC | 3 cut(s) | 212, 256, 702 |
| Hin1II | CATG | 2 cut(s) | 442, 469 |
| HincII | GTYRAC | 1 cut(s) | 484 |
| HindII | GTYRAC | 1 cut(s) | 484 |
| HinfI | GANTC | 1 cut(s) | 152 |
| HphI | GGTGA | 4 cut(s) | 102, 161, 347, 461 |
| Hpy166II | GTNNAC | 4 cut(s) | 110, 302, 484, 499 |
| Hpy188I | TCNGA | 5 cut(s) | 20, 130, 219, 249, 592 |
| Hpy188III | TCNNGA | 3 cut(s) | 185, 317, 401 |
| Hpy8I | GTNNAC | 4 cut(s) | 110, 302, 484, 499 |
| Hpy99I | CGWCG | 2 cut(s) | 687, 701 |
| HpyAV | CCTTC | 3 cut(s) | 354, 405, 597 |
| HpyCH4III | ACNGT | 2 cut(s) | 229, 299 |
| HpyCH4IV | ACGT | 2 cut(s) | 38, 324 |
| HpyCH4V | TGCA | 2 cut(s) | 68, 368 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 209 |
| HpyF3I | CTNAG | 4 cut(s) | 129, 310, 424, 591 |
| HpySE526I | ACGT | 2 cut(s) | 38, 324 |
| Hsp92II | CATG | 2 cut(s) | 442, 469 |
| Kzo9I | GATC | 1 cut(s) | 249 |
| LguI | GCTCTTC | 1 cut(s) | 388 |
| LmnI | GCTCC | 2 cut(s) | 336, 489 |
| LweI | GCATC | 2 cut(s) | 355, 499 |
| MaeI | CTAG | 3 cut(s) | 122, 317, 639 |
| MaeII | ACGT | 2 cut(s) | 38, 324 |
| MalI | GATC | 1 cut(s) | 251 |
| MboI | GATC | 1 cut(s) | 249 |
| MboII | GAAGA | 4 cut(s) | 332, 375, 536, 575 |
| MhlI | GDGCHC | 1 cut(s) | 546 |
| MluCI | AATT | 3 cut(s) | 63, 391, 690 |
| MseI | TTAA | 4 cut(s) | 207, 285, 390, 712 |
| MspA1I | CMGCKG | 1 cut(s) | 117 |
| MspR9I | CCNGG | 1 cut(s) | 665 |
| MvaI | CCWGG | 1 cut(s) | 665 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 209 |
| NcoI | CCATGG | 1 cut(s) | 465 |
| NdeII | GATC | 1 cut(s) | 249 |
| NlaIII | CATG | 2 cut(s) | 442, 469 |
| NlaIV | GGNNCC | 1 cut(s) | 59 |
| NspV | TTCGAA | 1 cut(s) | 155 |
| PciSI | GCTCTTC | 1 cut(s) | 388 |
| PfeI | GAWTC | 1 cut(s) | 152 |
| Psp6I | CCWGG | 1 cut(s) | 663 |
| PspGI | CCWGG | 1 cut(s) | 663 |
| PspN4I | GGNNCC | 1 cut(s) | 59 |
| PspPI | GGNCC | 1 cut(s) | 631 |
| RsaI | GTAC | 2 cut(s) | 226, 498 |
| RsaNI | GTAC | 2 cut(s) | 225, 497 |
| SapI | GCTCTTC | 1 cut(s) | 388 |
| SaqAI | TTAA | 4 cut(s) | 207, 285, 390, 712 |
| Sau3AI | GATC | 1 cut(s) | 249 |
| Sau96I | GGNCC | 1 cut(s) | 631 |
| ScrFI | CCNGG | 1 cut(s) | 665 |
| SduI | GDGCHC | 1 cut(s) | 546 |
| SfaNI | GCATC | 2 cut(s) | 355, 499 |
| SfuI | TTCGAA | 1 cut(s) | 155 |
| SinI | GGWCC | 1 cut(s) | 631 |
| SpeI | ACTAGT | 1 cut(s) | 638 |
| Sse9I | AATT | 3 cut(s) | 63, 391, 690 |
| SsiI | CCGC | 1 cut(s) | 115 |
| SspI | AATATT | 1 cut(s) | 160 |
| SspMI | CTAG | 3 cut(s) | 122, 317, 639 |
| StyD4I | CCNGG | 1 cut(s) | 663 |
| StyI | CCWWGG | 2 cut(s) | 465, 627 |
| TaaI | ACNGT | 2 cut(s) | 229, 299 |
| TaiI | ACGT | 2 cut(s) | 41, 327 |
| TaqI | TCGA | 2 cut(s) | 155, 559 |
| TasI | AATT | 3 cut(s) | 63, 391, 690 |
| TatI | WGTACW | 1 cut(s) | 496 |
| TfiI | GAWTC | 1 cut(s) | 152 |
| Tru1I | TTAA | 4 cut(s) | 207, 285, 390, 712 |
| Tru9I | TTAA | 4 cut(s) | 207, 285, 390, 712 |
| TscAI | CASTG | 2 cut(s) | 234, 506 |
| TspDTI | ATGAA | 1 cut(s) | 549 |
| TspGWI | ACGGA | 1 cut(s) | 349 |
| TspRI | CASTG | 2 cut(s) | 234, 506 |
| VpaK11BI | GGWCC | 1 cut(s) | 631 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 102 |
| XapI | RAATTY | 1 cut(s) | 690 |
| XbaI | TCTAGA | 1 cut(s) | 316 |
| XmiI | GTMKAC | 1 cut(s) | 301 |
| XspI | CTAG | 3 cut(s) | 122, 317, 639 |