ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 268 |
| AccI | GTMKAC | 1 cut(s) | 272 |
| AciI | CCGC | 2 cut(s) | 440, 688 |
| AclWI | GGATC | 3 cut(s) | 84, 638, 646 |
| AcoI | YGGCCR | 2 cut(s) | 154, 665 |
| AcsI | RAATTY | 2 cut(s) | 312, 463 |
| AcuI | CTGAAG | 1 cut(s) | 410 |
| AdeI | CACNNNGTG | 1 cut(s) | 253 |
| AgsI | TTSAA | 2 cut(s) | 413, 518 |
| AjnI | CCWGG | 3 cut(s) | 139, 433, 449 |
| AleI | CACNNNNGTG | 1 cut(s) | 575 |
| AluBI | AGCT | 3 cut(s) | 224, 659, 676 |
| AluI | AGCT | 3 cut(s) | 224, 659, 676 |
| AlwI | GGATC | 3 cut(s) | 84, 638, 646 |
| AoxI | GGCC | 3 cut(s) | 137, 154, 665 |
| ApeKI | GCWGC | 3 cut(s) | 543, 632, 685 |
| ApoI | RAATTY | 2 cut(s) | 312, 463 |
| AspS9I | GGNCC | 1 cut(s) | 10 |
| AsuHPI | GGTGA | 3 cut(s) | 16, 119, 562 |
| AvaII | GGWCC | 1 cut(s) | 10 |
| BaeGI | GKGCMC | 1 cut(s) | 383 |
| BalI | TGGCCA | 2 cut(s) | 156, 667 |
| BbvI | GCAGC | 3 cut(s) | 530, 619, 672 |
| BccI | CCATC | 3 cut(s) | 115, 340, 500 |
| BciT130I | CCWGG | 3 cut(s) | 141, 435, 451 |
| BciVI | GTATCC | 1 cut(s) | 19 |
| BfaI | CTAG | 1 cut(s) | 30 |
| BfuI | GTATCC | 1 cut(s) | 19 |
| BisI | GCNGC | 3 cut(s) | 544, 633, 686 |
| BlsI | GCNGC | 3 cut(s) | 545, 634, 687 |
| Bme1390I | CCNGG | 3 cut(s) | 141, 435, 451 |
| Bme18I | GGWCC | 1 cut(s) | 10 |
| BmgT120I | GGNCC | 1 cut(s) | 10 |
| BmrFI | CCNGG | 3 cut(s) | 141, 435, 451 |
| BsaJI | CCNNGG | 1 cut(s) | 140 |
| BseBI | CCWGG | 3 cut(s) | 141, 435, 451 |
| BseDI | CCNNGG | 1 cut(s) | 140 |
| BseGI | GGATG | 1 cut(s) | 264 |
| BseMII | CTCAG | 2 cut(s) | 177, 393 |
| BseRI | GAGGAG | 2 cut(s) | 575, 578 |
| BseSI | GKGCMC | 1 cut(s) | 383 |
| BseXI | GCAGC | 3 cut(s) | 530, 619, 672 |
| BshFI | GGCC | 3 cut(s) | 139, 156, 667 |
| BslFI | GGGAC | 1 cut(s) | 157 |
| BsmFI | GGGAC | 1 cut(s) | 157 |
| BsnI | GGCC | 3 cut(s) | 139, 156, 667 |
| Bsp1286I | GDGCHC | 1 cut(s) | 383 |
| Bsp143I | GATC | 4 cut(s) | 76, 477, 643, 651 |
| BspACI | CCGC | 2 cut(s) | 440, 688 |
| BspANI | GGCC | 3 cut(s) | 139, 156, 667 |
| BspCNI | CTCAG | 2 cut(s) | 176, 394 |
| BspHI | TCATGA | 1 cut(s) | 531 |
| BspPI | GGATC | 3 cut(s) | 84, 638, 646 |
| BssECI | CCNNGG | 1 cut(s) | 140 |
| BssMI | GATC | 4 cut(s) | 76, 477, 643, 651 |
| Bst2UI | CCWGG | 3 cut(s) | 141, 435, 451 |
| Bst4CI | ACNGT | 1 cut(s) | 265 |
| Bst6I | CTCTTC | 1 cut(s) | 373 |
| BstC8I | GCNNGC | 2 cut(s) | 206, 222 |
| BstDEI | CTNAG | 3 cut(s) | 163, 288, 402 |
| BstEII | GGTNACC | 1 cut(s) | 107 |
| BstF5I | GGATG | 1 cut(s) | 264 |
| BstKTI | GATC | 4 cut(s) | 79, 480, 646, 654 |
| BstMBI | GATC | 4 cut(s) | 76, 477, 643, 651 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 446, 455, 614, 673, 682 |
| BstNI | CCWGG | 3 cut(s) | 141, 435, 451 |
| BstPI | GGTNACC | 1 cut(s) | 107 |
| BstSCI | CCNGG | 3 cut(s) | 139, 433, 449 |
| BstSLI | GKGCMC | 1 cut(s) | 383 |
| BstV1I | GCAGC | 3 cut(s) | 530, 619, 672 |
| BsuI | GTATCC | 1 cut(s) | 19 |
| BsuRI | GGCC | 3 cut(s) | 139, 156, 667 |
| BtsCI | GGATG | 1 cut(s) | 264 |
| BtsIMutI | CAGTG | 2 cut(s) | 171, 434 |
| Cac8I | GCNNGC | 2 cut(s) | 206, 222 |
| CciI | TCATGA | 1 cut(s) | 531 |
| Cfr13I | GGNCC | 1 cut(s) | 10 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 644, 679 |
| CviAII | CATG | 2 cut(s) | 532, 681 |
| DdeI | CTNAG | 3 cut(s) | 163, 288, 402 |
| DpnI | GATC | 4 cut(s) | 78, 479, 645, 653 |
| DpnII | GATC | 4 cut(s) | 76, 477, 643, 651 |
| DraIII | CACNNNGTG | 1 cut(s) | 253 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 268 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 268 |
| EaeI | YGGCCR | 2 cut(s) | 154, 665 |
| Eam1104I | CTCTTC | 1 cut(s) | 373 |
| EarI | CTCTTC | 1 cut(s) | 373 |
| Eco47I | GGWCC | 1 cut(s) | 10 |
| Eco57I | CTGAAG | 1 cut(s) | 410 |
| Eco91I | GGTNACC | 1 cut(s) | 107 |
| EcoO109I | RGGNCCY | 1 cut(s) | 10 |
| EcoO65I | GGTNACC | 1 cut(s) | 107 |
| EcoRII | CCWGG | 3 cut(s) | 139, 433, 449 |
| FaeI | CATG | 2 cut(s) | 535, 684 |
| FaqI | GGGAC | 1 cut(s) | 157 |
| FatI | CATG | 2 cut(s) | 531, 680 |
| FblI | GTMKAC | 1 cut(s) | 272 |
| Fnu4HI | GCNGC | 3 cut(s) | 544, 633, 686 |
| FokI | GGATG | 1 cut(s) | 271 |
| Fsp4HI | GCNGC | 3 cut(s) | 544, 633, 686 |
| FspBI | CTAG | 1 cut(s) | 30 |
| GluI | GCNGC | 3 cut(s) | 544, 633, 686 |
| HaeIII | GGCC | 3 cut(s) | 139, 156, 667 |
| Hin1II | CATG | 2 cut(s) | 535, 684 |
| HindIII | AAGCTT | 1 cut(s) | 657 |
| HinfI | GANTC | 3 cut(s) | 244, 292, 404 |
| HphI | GGTGA | 3 cut(s) | 16, 119, 562 |
| Hpy166II | GTNNAC | 1 cut(s) | 273 |
| Hpy188III | TCNNGA | 1 cut(s) | 532 |
| Hpy8I | GTNNAC | 1 cut(s) | 273 |
| HpyAV | CCTTC | 1 cut(s) | 348 |
| HpyCH4III | ACNGT | 1 cut(s) | 265 |
| HpyCH4V | TGCA | 2 cut(s) | 204, 546 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 446, 455, 614, 673, 682 |
| HpyF3I | CTNAG | 3 cut(s) | 163, 288, 402 |
| Hsp92II | CATG | 2 cut(s) | 535, 684 |
| Kzo9I | GATC | 4 cut(s) | 76, 477, 643, 651 |
| LmnI | GCTCC | 1 cut(s) | 640 |
| Lsp1109I | GCAGC | 3 cut(s) | 530, 619, 672 |
| MaeI | CTAG | 1 cut(s) | 30 |
| MaeIII | GTNAC | 2 cut(s) | 56, 107 |
| MalI | GATC | 4 cut(s) | 78, 479, 645, 653 |
| MboI | GATC | 4 cut(s) | 76, 477, 643, 651 |
| MboII | GAAGA | 4 cut(s) | 52, 338, 360, 416 |
| MfeI | CAATTG | 1 cut(s) | 80 |
| MhlI | GDGCHC | 1 cut(s) | 383 |
| MlsI | TGGCCA | 2 cut(s) | 156, 667 |
| MluCI | AATT | 9 cut(s) | 15, 80, 96, 298, 312, 463, 481, 552, 598 |
| MluNI | TGGCCA | 2 cut(s) | 156, 667 |
| MlyI | GAGTC | 1 cut(s) | 413 |
| MnlI | CCTC | 6 cut(s) | 67, 162, 469, 553, 599, 622 |
| Mox20I | TGGCCA | 2 cut(s) | 156, 667 |
| MscI | TGGCCA | 2 cut(s) | 156, 667 |
| MseI | TTAA | 2 cut(s) | 95, 555 |
| MslI | CAYNNNNRTG | 1 cut(s) | 575 |
| Msp20I | TGGCCA | 2 cut(s) | 156, 667 |
| MspR9I | CCNGG | 3 cut(s) | 141, 435, 451 |
| MunI | CAATTG | 1 cut(s) | 80 |
| MvaI | CCWGG | 3 cut(s) | 141, 435, 451 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 446, 455, 614, 673, 682 |
| NdeII | GATC | 4 cut(s) | 76, 477, 643, 651 |
| NlaIII | CATG | 2 cut(s) | 535, 684 |
| NmuCI | GTSAC | 2 cut(s) | 56, 107 |
| OliI | CACNNNNGTG | 1 cut(s) | 575 |
| PagI | TCATGA | 1 cut(s) | 531 |
| PfeI | GAWTC | 2 cut(s) | 244, 292 |
| PkrI | GCNGC | 3 cut(s) | 545, 634, 687 |
| PleI | GAGTC | 1 cut(s) | 412 |
| PpsI | GAGTC | 1 cut(s) | 412 |
| PpuMI | RGGWCCY | 1 cut(s) | 10 |
| Psp5II | RGGWCCY | 1 cut(s) | 10 |
| Psp6I | CCWGG | 3 cut(s) | 139, 433, 449 |
| PspEI | GGTNACC | 1 cut(s) | 107 |
| PspGI | CCWGG | 3 cut(s) | 139, 433, 449 |
| PspPI | GGNCC | 1 cut(s) | 10 |
| PspPPI | RGGWCCY | 1 cut(s) | 10 |
| RseI | CAYNNNNRTG | 1 cut(s) | 575 |
| SaqAI | TTAA | 2 cut(s) | 95, 555 |
| SatI | GCNGC | 3 cut(s) | 544, 633, 686 |
| Sau3AI | GATC | 4 cut(s) | 76, 477, 643, 651 |
| Sau96I | GGNCC | 1 cut(s) | 10 |
| SchI | GAGTC | 1 cut(s) | 413 |
| ScrFI | CCNGG | 3 cut(s) | 141, 435, 451 |
| SduI | GDGCHC | 1 cut(s) | 383 |
| SetI | ASST | 8 cut(s) | 15, 35, 63, 173, 226, 342, 661, 678 |
| SinI | GGWCC | 1 cut(s) | 10 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 575 |
| Sse9I | AATT | 9 cut(s) | 15, 80, 96, 298, 312, 463, 481, 552, 598 |
| SsiI | CCGC | 2 cut(s) | 440, 688 |
| SspMI | CTAG | 1 cut(s) | 30 |
| StyD4I | CCNGG | 3 cut(s) | 139, 433, 449 |
| TaaI | ACNGT | 1 cut(s) | 265 |
| TasI | AATT | 9 cut(s) | 15, 80, 96, 298, 312, 463, 481, 552, 598 |
| TfiI | GAWTC | 2 cut(s) | 244, 292 |
| Tru1I | TTAA | 2 cut(s) | 95, 555 |
| Tru9I | TTAA | 2 cut(s) | 95, 555 |
| TscAI | CASTG | 2 cut(s) | 171, 434 |
| TseFI | GTSAC | 2 cut(s) | 56, 107 |
| TseI | GCWGC | 3 cut(s) | 543, 632, 685 |
| Tsp45I | GTSAC | 2 cut(s) | 56, 107 |
| TspDTI | ATGAA | 3 cut(s) | 175, 219, 257 |
| TspRI | CASTG | 2 cut(s) | 171, 434 |
| VpaK11BI | GGWCC | 1 cut(s) | 10 |
| XapI | RAATTY | 2 cut(s) | 312, 463 |
| XmiI | GTMKAC | 1 cut(s) | 272 |
| XspI | CTAG | 1 cut(s) | 30 |