RLG00000013839

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000093
Physical Location & Seq
Forward (+)
42662577 .. 42667222
4646 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013839

Sequence Viewer

Length: 1623 bp
ATGTCATCCTCTCTGTATCCCGATGTTTACATTCCTTCCCAATTTCCCCGATCAACCCCTCCTTCATATGATCTCCTTCCCATCTCAGATCCCCTATCCGCCACAGTTTTCACTGAATCAGTTTTCACTGAATCACCTACTCTCAATGTTTCACCAACATATCCACCCACTGATGTCACCTCCCATATCTCCTCCACTGAATCTACCATCACTCTTATCTCATCCAATTTCCAGCAGCTTAATCTCAAAAGATTGGGGTCAGAAGTTGAAGACATTCCATCGCCCAAGCGCCCATGTCTTGTTGATCTTTCTGGTGAAGAAGCTGATGATCCTATCCTCAGTTCCCTTATCAGGGGCCGCGATCGTGGCCTGGGTGGCCGGGGCCGGGGCCGGGGTCGGGGCCGTAATACTGCAAAAGGAGGCCGCGCTGGACGGGGCCGAGCTGCTAGCTCCTCTCATTCTTCCTTCTCTCAGGATCGGGAAACCCAATATCATGGGACCATTATTCAAGGTGAAGCCCTCTTCGAAGTCCAGATTCAATTGGCAGAGCAAGTTCAAGTGATTCGTCATGATCTCCCAACCAATCCAATTCCCCCAGCTGCTCGCATGAAGGAAATTCCTGATCCGAGCCTGGACAATGGCTGTGGTGATTTTAACGAGATTCAATGGTCTTTCGAAAAATCGGGAGGTGCGGCCCCTGAACTTTGGAGGCTAAAGCTTTTCCAATCTTTTATCTCTAATGCAAACCTGCGTGACCTCAACTTTCATGGCCCTGAGTATACATGGTTCGCTCTGCGAAATGGAAGGGTCTATATCAAGGAGAGATTAGATAGAGCAATGGCAAATGTTGAATGGTGTACGGCTCAAGATCGTACACAGGTCTTCCACCTCCCCAAAATCGGGTCTGATCACAGACCTATTTTAATTGATACTCTCCCCACTGAGGTGCGTGGTCGCCCTCTCTTCCGTTTCGAACAGTTTTGGAACTCTCATATTGAATGTGCTTCGGTTATTCAAAATGCTTGGCACCAGATTTCCACTTCTTCTCCTATGCATACTTGGACTTCTAATTTGAGAACTGTTAGAACATCTCTTCAGCAGTGGAGTAAGACAGCTTTTCCCACTTCCCATGCCCAAGTCCGGTCTTTGATTCATGATTTGGAAGCTATCTATGCATCTGATGCCCCTGACACTTTTCCTCAAATCTCTGGAATCACGGAGAACATCTCAGATCTTTGGAAGAGGGACGAGATGTATTGGCGACAACACACCACAACCATTGACACCTGGTCTCCTCCCCCTGCTCTTTGTTTCAAAGTAAATACTGATGCTTCTTGGAATGGAAATTCCGTCTCTGGTGGTATTGCAGTTGTTGTGCGTGATGATATGGGAAGAATTGTTGATGGTTTTGCGGGTATATCTCCAGCCATTTCACCACTAGCGGCTGAGCTCCTTGCAATCTGTGAAGCCTTGGTTCTTATTGCAAAGCTTCCTCCTTGCCCGGTCATTCTGGCATCGGATTCTATCACTCTTATTCAGGCTCTAAAGTCAGGCATCCCTCCTCAAGATTGGACTGTGACTAATTTATTCTCTAAAGCCCGGTACCTCTCTCGAAACCGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

541

Amino Acids

60.0

Weight (kDa)

6.25

Isoelectric Point (pI)

45.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 441 - 536 4.9e-11 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000093)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G09490
fragaria_vesca FvH4_1g23791 FvH4_2g01641 FvH4_2g04612 FvH4_2g06831 FvH4_2g07841 FvH4_2g13581 FvH4_2g27220 FvH4_2g30621 FvH4_2g34753 FvH4_3g10392 FvH4_3g24291 FvH4_3g25030 FvH4_3g29361 FvH4_3g31372 FvH4_3g32402 FvH4_3g43651 FvH4_4g03830 FvH4_4g05481 FvH4_4g20431 FvH4_4g21421 FvH4_4g25931 FvH4_5g08801 FvH4_5g21021 FvH4_5g26254 FvH4_5g30931 FvH4_5g31281 FvH4_5g33581 FvH4_5g35622 FvH4_6g02100 FvH4_6g07963 FvH4_6g11620 FvH4_6g16031 FvH4_6g19041 FvH4_6g24211 FvH4_6g24271 FvH4_6g30670 FvH4_6g49540 FvH4_7g25914
malus_domestica MD03G1245200.v1.1 MD04G1168000.v1.1 MD09G1242600.v1.1 MD15G1334000.v1.1 MD17G1165700.v1.1
prunus_persica Prupe.1G073500_v2.0.a1 Prupe.1G283700_v2.0.a1 Prupe.1G524100_v2.0.a1 Prupe.2G022700_v2.0.a1 Prupe.2G022800_v2.0.a1 Prupe.2G022800_v2.0.a1 Prupe.2G044300_v2.0.a1 Prupe.2G048800_v2.0.a1 Prupe.2G092000_v2.0.a1 Prupe.2G216500_v2.0.a1 Prupe.2G216600_v2.0.a1 Prupe.2G216600_v2.0.a1 Prupe.3G103400_v2.0.a1 Prupe.3G143300_v2.0.a1 Prupe.3G190000_v2.0.a1 Prupe.3G219800_v2.0.a1 Prupe.4G177800_v2.0.a1 Prupe.4G261300_v2.0.a1 Prupe.5G044600_v2.0.a1 Prupe.5G067400_v2.0.a1 Prupe.7G083900_v2.0.a1 Prupe.7G120900_v2.0.a1 Prupe.8G032200_v2.0.a1 Prupe.8G036100_v2.0.a1 Prupe.8G042700_v2.0.a1
pyrus_communis pycom01g21710 pycom02g19770 pycom03g05120 pycom05g01370 pycom05g08780 pycom05g10120 pycom07g01370 pycom07g05930 pycom08g15760 pycom08g18090 pycom08g21060 pycom09g03880 pycom10g03870 pycom13g22240 pycom16g05120 pycom16g17170 pycom17g12180 pycom17g16290 pycom17g21230 pycom17g24990 pycom215g00100
rosa_chinensis RchiOBHm_Chr1g0323031 RchiOBHm_Chr1g0324391 RchiOBHm_Chr1g0326401 RchiOBHm_Chr1g0327811 RchiOBHm_Chr1g0332521 RchiOBHm_Chr1g0336501 RchiOBHm_Chr1g0346021 RchiOBHm_Chr1g0347191 RchiOBHm_Chr1g0367181 RchiOBHm_Chr2g0089441 RchiOBHm_Chr2g0115441 RchiOBHm_Chr3g0490691 RchiOBHm_Chr4g0395251 RchiOBHm_Chr4g0398081 RchiOBHm_Chr4g0409451 RchiOBHm_Chr4g0413041 RchiOBHm_Chr4g0415471 RchiOBHm_Chr4g0420961 RchiOBHm_Chr5g0040301 RchiOBHm_Chr5g0070651 RchiOBHm_Chr6g0263011 RchiOBHm_Chr6g0270721 RchiOBHm_Chr6g0277111 RchiOBHm_Chr7g0179771 RchiOBHm_Chr7g0223051 RchiOBHm_Chr7g0225031 RchiOBHm_Chr7g0225091
rosa_laevigata RLG00000001668 RLG00000001672 RLG00000001676 RLG00000007762 RLG00000008994 RLG00000011117 RLG00000013729 RLG00000013839 RLG00000014759 RLG00000016638 RLG00000018535 RLG00000018614 RLG00000018646 RLG00000020679 RLG00000023337 RLG00000029348 RLG00000035891 RLG00000035912
rosa_multiflora Rmu_co8152500.1_g000001 Rmu_co8203314.1_g000001 Rmu_co8383183.1_g000001 Rmu_sc0000293.1_g000033 Rmu_sc0000367.1_g000226 Rmu_sc0000512.1_g000023 Rmu_sc0000594.1_g000059 Rmu_sc0000654.1_g000022 Rmu_sc0000654.1_g000047 Rmu_sc0000706.1_g000037 Rmu_sc0001348.1_g000008 Rmu_sc0001385.1_g000024 Rmu_sc0001405.1_g000002 Rmu_sc0001521.1_g000048 Rmu_sc0001932.1_g000008 Rmu_sc0001932.1_g000009 Rmu_sc0002535.1_g000011 Rmu_sc0002908.1_g000019 Rmu_sc0003709.1_g000004 Rmu_sc0003882.1_g000054 Rmu_sc0004035.1_g000007 Rmu_sc0004041.1_g000007 Rmu_sc0004288.1_g000011 Rmu_sc0004569.1_g000004 Rmu_sc0004677.1_g000016 Rmu_sc0004834.1_g000010 Rmu_sc0005193.1_g000008 Rmu_sc0005354.1_g000009 Rmu_sc0006514.1_g000021 Rmu_sc0006691.1_g000001 Rmu_sc0006888.1_g000021 Rmu_sc0006889.1_g000013 Rmu_sc0008096.1_g000017 Rmu_sc0008378.1_g000003 Rmu_sc0009127.1_g000005 Rmu_sc0009191.1_g000016 Rmu_sc0009687.1_g000018 Rmu_sc0009709.1_g000005 Rmu_sc0009880.1_g000015 Rmu_sc0011710.1_g000001 Rmu_sc0012615.1_g000004 Rmu_sc0016091.1_g000002 Rmu_sc0022339.1_g000006 Rmu_sc0026537.1_g000002 Rmu_sc0027689.1_g000002 Rmu_sc0036222.1_g000001 Rmu_sc0040890.1_g000001 Rmu_ssc0000148.1_g000006 Rmu_ssc0000151.1_g000017 Rmu_ssc0000404.1_g000018 Rmu_ssc0000449.1_g000009
rosa_roxburghii Rroxscaffold_1G00017760 Rroxscaffold_1G00059150 Rroxscaffold_2G00142560 Rroxscaffold_3G00220440 Rroxscaffold_3G00231700 Rroxscaffold_3G00232400 Rroxscaffold_3G00274510 Rroxscaffold_4G00288790 Rroxscaffold_4G00305680 Rroxscaffold_4G00314880 Rroxscaffold_4G00314900 Rroxscaffold_5G00334590 Rroxscaffold_6G00394110 Rroxscaffold_6G00415860 Rroxscaffold_7G00168240 Rroxscaffold_7G00204400 Rroxscaffold_7G00207840
rosa_rugosa Rorug01G0034900 Rorug02G0079500 Rorug02G0229000 Rorug02G0229100 Rorug02G0291400 Rorug02G0298800 Rorug03G0046400 Rorug03G0064700 Rorug03G0077300 Rorug03G0199000 Rorug03G0200400 Rorug04G0205200 Rorug05G0025400 Rorug05G0127400 Rorug05G0192100 Rorug05G0453400 Rorug05G0538300 Rorug06G0035200 Rorug06G0241000 Rorug06G0268300 Rorug07G0120300 Rorug07G0145000 Rorug07G0209100 Rorug07G0240500 Rorug07G0271700
rosa_samantha Rh1AG179100 Rh1BG106900 Rh1BG163400 Rh1BG163500 Rh1BG323500 Rh2CG447900 Rh2DG503700 Rh3AG293600 Rh3CG229100 Rh3DG221500 Rh4AG106000 Rh4BG267700 Rh4CG062500 Rh4CG090100 Rh4CG114800 Rh5AG038400 Rh5BG395400 Rh5CG441700 Rh5CG572000 Rh6AG222400 Rh6AG264500 Rh6BG137400 Rh6BG225700 Rh6CG144300 Rh6DG087600 Rh6DG096000 Rh6DG362400 Rh6DG390200 Rh7AG207500 Rh7AG324700 Rh7AG388800 Rh7AG437100 Rh7BG019000 Rh7BG374600 Rh7CG028700 Rh7CG341500 Rh7CG408000 Rh7CG408300 Rh7DG354600
rosa_wichuraiana Rw0G009630 Rw0G012170 Rw4G022700 Rw5G028420 Rw5G029490 Rw6G007220 Rw6G007410 Rw6G017880 Rw7G012440 Rw7G021830 Rw7G027490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 756
Acc65I GGTACC 1 cut(s) 1602
AccB1I GGYRCC 2 cut(s) 1026, 1602
AccI GTMKAC 1 cut(s) 779
AccII CGCG 2 cut(s) 360, 426
AciI CCGC 6 cut(s) 99, 358, 424, 692, 1412, 1442
AclWI GGATC 4 cut(s) 83, 323, 483, 617
AcoI YGGCCR 1 cut(s) 376
AcsI RAATTY 2 cut(s) 615, 1345
AcuI CTGAAG 1 cut(s) 1079
AfaI GTAC 3 cut(s) 859, 874, 1604
AfiI CCNNNNNNNGG 9 cut(s) 351, 352, 385, 391, 397, 899, 900, 943, 1140
AgeI ACCGGT 1 cut(s) 1617
AgsI TTSAA 9 cut(s) 269, 509, 539, 557, 665, 851, 998, 1016, 1315
AhdI GACNNNNNGTC 1 cut(s) 1288
AjnI CCWGG 3 cut(s) 369, 630, 1286
AleI CACNNNNGTG 1 cut(s) 944
Alw21I GWGCWC 1 cut(s) 1452
Alw26I GTCTC 2 cut(s) 1296, 1357
AlwI GGATC 4 cut(s) 83, 323, 483, 617
ApeKI GCWGC 3 cut(s) 235, 443, 599
ApoI RAATTY 2 cut(s) 615, 1345
ArsI GACNNNNNNTTYG 2 cut(s) 1054, 1086
AsiGI ACCGGT 1 cut(s) 1617
Asp700I GAANNNNTTC 1 cut(s) 273
Asp718I GGTACC 1 cut(s) 1602
AspLEI GCGC 2 cut(s) 291, 428
AspS9I GGNCC 8 cut(s) 355, 382, 388, 400, 436, 498, 694, 770
AsuC2I CCSGG 5 cut(s) 380, 386, 392, 1502, 1600
AsuHPI GGTGA 7 cut(s) 126, 144, 169, 326, 524, 659, 1425
AsuII TTCGAA 3 cut(s) 525, 675, 972
AsuNHI GCTAGC 1 cut(s) 446
AvaII GGWCC 1 cut(s) 498
BanI GGYRCC 2 cut(s) 1026, 1602
BanII GRGCYC 1 cut(s) 1452
BbsI GAAGAC 2 cut(s) 276, 874
Bbv12I GWGCWC 1 cut(s) 1452
BbvI GCAGC 3 cut(s) 247, 430, 586
BccI CCATC 4 cut(s) 89, 215, 286, 1397
BceAI ACGGC 2 cut(s) 387, 876
BciT130I CCWGG 3 cut(s) 371, 632, 1288
BciVI GTATCC 1 cut(s) 27
BclI TGATCA 1 cut(s) 907
BcnI CCSGG 5 cut(s) 380, 386, 392, 1502, 1600
BcoDI GTCTC 2 cut(s) 1296, 1357
BfaI CTAG 2 cut(s) 447, 1439
BfoI RGCGCY 1 cut(s) 292
BfuAI ACCTGC 1 cut(s) 756
BfuI GTATCC 1 cut(s) 27
BglI GCCNNNNNGGC 1 cut(s) 375
BglII AGATCT 1 cut(s) 1231
BisI GCNGC 7 cut(s) 236, 358, 424, 444, 600, 693, 1443
BlpI GCTNAGC 1 cut(s) 1446
BlsI GCNGC 7 cut(s) 237, 359, 425, 445, 601, 694, 1444
Bme1390I CCNGG 8 cut(s) 371, 380, 386, 392, 632, 1288, 1502, 1600
Bme18I GGWCC 1 cut(s) 498
BmeRI GACNNNNNGTC 1 cut(s) 1288
BmgT120I GGNCC 8 cut(s) 355, 382, 388, 400, 436, 498, 694, 770
BmiI GGNNCC 9 cut(s) 356, 383, 389, 401, 437, 499, 696, 1028, 1604
BmrFI CCNGG 8 cut(s) 371, 380, 386, 392, 632, 1288, 1502, 1600
BmsI GCATC 5 cut(s) 1171, 1184, 1318, 1523, 1563
BmtI GCTAGC 1 cut(s) 450
BpiI GAAGAC 2 cut(s) 276, 874
BplI GAGNNNNNCTC 2 cut(s) 1211, 1243
BpmI CTGGAG 1 cut(s) 1407
Bpu1102I GCTNAGC 1 cut(s) 1446
Bpu14I TTCGAA 3 cut(s) 525, 675, 972
BpuEI CTTGAG 2 cut(s) 849, 1548
BpuMI CCSGG 5 cut(s) 380, 386, 392, 1502, 1600
BsaI GGTCTC 1 cut(s) 1296
BsaJI CCNNGG 5 cut(s) 370, 379, 385, 391, 1470
BsaWI WCCGGW 2 cut(s) 1140, 1617
BsaXI ACNNNNNCTCC 4 cut(s) 1030, 1060, 1276, 1306
Bsc4I CCNNNNNNNGG 9 cut(s) 351, 352, 385, 391, 397, 899, 900, 943, 1140
Bse118I RCCGGY 1 cut(s) 1617
Bse3DI GCAATG 1 cut(s) 843
BseBI CCWGG 3 cut(s) 371, 632, 1288
BseDI CCNNGG 5 cut(s) 370, 379, 385, 391, 1470
BseGI GGATG 3 cut(s) 5, 221, 1554
BseLI CCNNNNNNNGG 9 cut(s) 351, 352, 385, 391, 397, 899, 900, 943, 1140
BseMI GCAATG 1 cut(s) 843
BseMII CTCAG 7 cut(s) 99, 352, 485, 765, 933, 1242, 1437
BseRI GAGGAG 4 cut(s) 181, 442, 1284, 1551
BseXI GCAGC 3 cut(s) 247, 430, 586
BseYI CCCAGC 1 cut(s) 595
Bsh1236I CGCG 2 cut(s) 360, 426
Bsh1285I CGRYCG 1 cut(s) 364
BshNI GGYRCC 2 cut(s) 1026, 1602
BshTI ACCGGT 1 cut(s) 1617
BsiEI CGRYCG 1 cut(s) 364
BsiHKAI GWGCWC 1 cut(s) 1452
BsiSI CCGG 7 cut(s) 379, 385, 391, 1141, 1502, 1600, 1618
BslFI GGGAC 2 cut(s) 511, 1259
BslI CCNNNNNNNGG 9 cut(s) 351, 352, 385, 391, 397, 899, 900, 943, 1140
BsmAI GTCTC 2 cut(s) 1296, 1357
BsmBI CGTCTC 1 cut(s) 1357
BsmFI GGGAC 2 cut(s) 511, 1259
Bso31I GGTCTC 1 cut(s) 1296
Bsp119I TTCGAA 3 cut(s) 525, 675, 972
Bsp1286I GDGCHC 1 cut(s) 1452
Bsp1720I GCTNAGC 1 cut(s) 1446
BspACI CCGC 6 cut(s) 99, 358, 424, 692, 1412, 1442
BspCNI CTCAG 7 cut(s) 98, 351, 484, 766, 934, 1241, 1438
BspFNI CGCG 2 cut(s) 360, 426
BspHI TCATGA 2 cut(s) 568, 1153
BspLI GGNNCC 9 cut(s) 356, 383, 389, 401, 437, 499, 696, 1028, 1604
BspMI ACCTGC 1 cut(s) 756
BspOI GCTAGC 1 cut(s) 450
BspPI GGATC 4 cut(s) 83, 323, 483, 617
BspT104I TTCGAA 3 cut(s) 525, 675, 972
BspT107I GGYRCC 2 cut(s) 1026, 1602
BspTNI GGTCTC 1 cut(s) 1296
BsrDI GCAATG 1 cut(s) 843
BsrFI RCCGGY 1 cut(s) 1617
BssAI RCCGGY 1 cut(s) 1617
BssECI CCNNGG 5 cut(s) 370, 379, 385, 391, 1470
BssNAI GTATAC 1 cut(s) 780
BssT1I CCWWGG 1 cut(s) 1470
Bst1107I GTATAC 1 cut(s) 780
Bst2UI CCWGG 3 cut(s) 371, 632, 1288
Bst4CI ACNGT 4 cut(s) 106, 978, 1081, 1576
Bst6I CTCTTC 4 cut(s) 527, 968, 1098, 1235
BstAPI GCANNNNNTGC 1 cut(s) 1181
BstBI TTCGAA 3 cut(s) 525, 675, 972
BstC8I GCNNGC 2 cut(s) 448, 604
BstDEI CTNAG 7 cut(s) 85, 338, 471, 774, 942, 1228, 1446
BstF5I GGATG 3 cut(s) 5, 221, 1554
BstFNI CGCG 2 cut(s) 360, 426
BstH2I RGCGCY 1 cut(s) 292
BstHHI GCGC 2 cut(s) 291, 428
BstMAI GTCTC 2 cut(s) 1296, 1357
BstMCI CGRYCG 1 cut(s) 364
BstMWI GCNNNNNNNGC 4 cut(s) 366, 375, 1172, 1181
BstNI CCWGG 3 cut(s) 371, 632, 1288
BstSCI CCNGG 8 cut(s) 369, 378, 384, 390, 630, 1286, 1500, 1598
BstUI CGCG 2 cut(s) 360, 426
BstV1I GCAGC 3 cut(s) 247, 430, 586
BstV2I GAAGAC 2 cut(s) 276, 874
BstX2I RGATCY 2 cut(s) 88, 1231
BstXI CCANNNNNNTGG 1 cut(s) 494
BstYI RGATCY 2 cut(s) 88, 1231
BstZ17I GTATAC 1 cut(s) 780
BsuI GTATCC 1 cut(s) 27
BtgZI GCGATG 1 cut(s) 264
BtsCI GGATG 3 cut(s) 5, 221, 1554
BtsI GCAGTG 1 cut(s) 1106
BtsIMutI CAGTG 6 cut(s) 111, 126, 168, 195, 939, 1106
BveI ACCTGC 1 cut(s) 756
Cac8I GCNNGC 2 cut(s) 448, 604
CciI TCATGA 2 cut(s) 568, 1153
CfoI GCGC 2 cut(s) 291, 428
Cfr10I RCCGGY 1 cut(s) 1617
Cfr13I GGNCC 8 cut(s) 355, 382, 388, 400, 436, 498, 694, 770
CsiI ACCWGGT 1 cut(s) 1286
Csp6I GTAC 3 cut(s) 858, 873, 1603
CspAI ACCGGT 1 cut(s) 1617
CspCI CAANNNNNGTGG 4 cut(s) 625, 660, 1261, 1296
CviAII CATG 8 cut(s) 294, 494, 569, 607, 767, 783, 1130, 1154
CviQI GTAC 3 cut(s) 858, 873, 1603
DdeI CTNAG 7 cut(s) 85, 338, 471, 774, 942, 1228, 1446
DriI GACNNNNNGTC 1 cut(s) 1288
EaeI YGGCCR 1 cut(s) 376
Eam1104I CTCTTC 4 cut(s) 527, 968, 1098, 1235
Eam1105I GACNNNNNGTC 1 cut(s) 1288
EarI CTCTTC 4 cut(s) 527, 968, 1098, 1235
EciI GGCGGA 1 cut(s) 88
Ecl136II GAGCTC 1 cut(s) 1450
Eco130I CCWWGG 1 cut(s) 1470
Eco24I GRGCYC 1 cut(s) 1452
Eco31I GGTCTC 1 cut(s) 1296
Eco47I GGWCC 1 cut(s) 498
Eco53kI GAGCTC 1 cut(s) 1450
Eco57I CTGAAG 1 cut(s) 1079
EcoICRI GAGCTC 1 cut(s) 1450
EcoRII CCWGG 3 cut(s) 369, 630, 1286
EcoT14I CCWWGG 1 cut(s) 1470
EcoT22I ATGCAT 2 cut(s) 1056, 1177
EcoT38I GRGCYC 1 cut(s) 1452
ErhI CCWWGG 1 cut(s) 1470
Esp3I CGTCTC 1 cut(s) 1357
FaeI CATG 8 cut(s) 297, 497, 572, 610, 770, 786, 1133, 1157
FaqI GGGAC 2 cut(s) 511, 1259
FatI CATG 8 cut(s) 293, 493, 568, 606, 766, 782, 1129, 1153
FauI CCCGC 1 cut(s) 1405
FauNDI CATATG 1 cut(s) 67
FbaI TGATCA 1 cut(s) 907
FblI GTMKAC 1 cut(s) 779
Fnu4HI GCNGC 7 cut(s) 236, 358, 424, 444, 600, 693, 1443
FokI GGATG 2 cut(s) 208, 1541
FriOI GRGCYC 1 cut(s) 1452
Fsp4HI GCNGC 7 cut(s) 236, 358, 424, 444, 600, 693, 1443
FspBI CTAG 2 cut(s) 447, 1439
GlaI GCGC 2 cut(s) 290, 427
GluI GCNGC 7 cut(s) 236, 358, 424, 444, 600, 693, 1443
GsaI CCCAGC 1 cut(s) 599
GsuI CTGGAG 1 cut(s) 1407
HaeII RGCGCY 1 cut(s) 292
HapII CCGG 7 cut(s) 379, 385, 391, 1141, 1502, 1600, 1618
HhaI GCGC 2 cut(s) 291, 428
Hin1II CATG 8 cut(s) 297, 497, 572, 610, 770, 786, 1133, 1157
Hin6I GCGC 2 cut(s) 289, 426
HinP1I GCGC 2 cut(s) 289, 426
HindIII AAGCTT 2 cut(s) 716, 1487
HinfI GANTC 9 cut(s) 116, 131, 200, 535, 562, 661, 1150, 1212, 1520
HpaII CCGG 7 cut(s) 379, 385, 391, 1141, 1502, 1600, 1618
HphI GGTGA 7 cut(s) 126, 144, 169, 326, 524, 659, 1425
Hpy166II GTNNAC 4 cut(s) 28, 780, 858, 875
Hpy188I TCNGA 7 cut(s) 88, 262, 627, 907, 1180, 1231, 1519
Hpy8I GTNNAC 4 cut(s) 28, 780, 858, 875
HpyAV CCTTC 6 cut(s) 45, 72, 86, 475, 604, 798
HpyCH4III ACNGT 4 cut(s) 106, 978, 1081, 1576
HpyCH4V TGCA 7 cut(s) 413, 743, 1054, 1175, 1367, 1457, 1484
HpyF10VI GCNNNNNNNGC 4 cut(s) 366, 375, 1172, 1181
HpyF3I CTNAG 7 cut(s) 85, 338, 471, 774, 942, 1228, 1446
Hsp92II CATG 8 cut(s) 297, 497, 572, 610, 770, 786, 1133, 1157
HspAI GCGC 2 cut(s) 289, 426
KpnI GGTACC 1 cut(s) 1606
Ksp22I TGATCA 1 cut(s) 907
LmnI GCTCC 2 cut(s) 455, 1455
Lsp1109I GCAGC 3 cut(s) 247, 430, 586
LweI GCATC 5 cut(s) 1171, 1184, 1318, 1523, 1563
MabI ACCWGGT 1 cut(s) 1286
MaeI CTAG 2 cut(s) 447, 1439
MaeIII GTNAC 3 cut(s) 175, 752, 1576
MfeI CAATTG 1 cut(s) 539
MflI RGATCY 2 cut(s) 88, 1231
MhlI GDGCHC 1 cut(s) 1452
Mph1103I ATGCAT 2 cut(s) 1056, 1177
MroXI GAANNNNTTC 1 cut(s) 273
MseI TTAA 3 cut(s) 240, 654, 923
MslI CAYNNNNRTG 1 cut(s) 944
MspA1I CMGCKG 1 cut(s) 599
MspI CCGG 7 cut(s) 379, 385, 391, 1141, 1502, 1600, 1618
MspR9I CCNGG 8 cut(s) 371, 380, 386, 392, 632, 1288, 1502, 1600
MunI CAATTG 1 cut(s) 539
MvaI CCWGG 3 cut(s) 371, 632, 1288
MvnI CGCG 2 cut(s) 360, 426
MwoI GCNNNNNNNGC 4 cut(s) 366, 375, 1172, 1181
NciI CCSGG 5 cut(s) 380, 386, 392, 1502, 1600
NdeI CATATG 1 cut(s) 67
NheI GCTAGC 1 cut(s) 446
NlaIII CATG 8 cut(s) 297, 497, 572, 610, 770, 786, 1133, 1157
NlaIV GGNNCC 9 cut(s) 356, 383, 389, 401, 437, 499, 696, 1028, 1604
NmeAIII GCCGAG 1 cut(s) 464
NmuCI GTSAC 3 cut(s) 175, 752, 1576
NsiI ATGCAT 2 cut(s) 1056, 1177
NspV TTCGAA 3 cut(s) 525, 675, 972
OliI CACNNNNGTG 1 cut(s) 944
PagI TCATGA 2 cut(s) 568, 1153
PdmI GAANNNNTTC 1 cut(s) 273
PfeI GAWTC 9 cut(s) 116, 131, 200, 535, 562, 661, 1150, 1212, 1520
PinAI ACCGGT 1 cut(s) 1617
PkrI GCNGC 7 cut(s) 237, 359, 425, 445, 601, 694, 1444
Ple19I CGATCG 1 cut(s) 364
Psp124BI GAGCTC 1 cut(s) 1452
Psp6I CCWGG 3 cut(s) 369, 630, 1286
PspFI CCCAGC 1 cut(s) 595
PspGI CCWGG 3 cut(s) 369, 630, 1286
PspN4I GGNNCC 9 cut(s) 356, 383, 389, 401, 437, 499, 696, 1028, 1604
PspPI GGNCC 8 cut(s) 355, 382, 388, 400, 436, 498, 694, 770
PsrI GAACNNNNNNTAC 2 cut(s) 770, 802
PsuI RGATCY 2 cut(s) 88, 1231
PvuI CGATCG 1 cut(s) 364
PvuII CAGCTG 1 cut(s) 599
RsaI GTAC 3 cut(s) 859, 874, 1604
RsaNI GTAC 3 cut(s) 858, 873, 1603
RseI CAYNNNNRTG 1 cut(s) 944
SacI GAGCTC 1 cut(s) 1452
SaqAI TTAA 3 cut(s) 240, 654, 923
SatI GCNGC 7 cut(s) 236, 358, 424, 444, 600, 693, 1443
Sau96I GGNCC 8 cut(s) 355, 382, 388, 400, 436, 498, 694, 770
ScrFI CCNGG 8 cut(s) 371, 380, 386, 392, 632, 1288, 1502, 1600
SduI GDGCHC 1 cut(s) 1452
SexAI ACCWGGT 1 cut(s) 1286
SfaNI GCATC 5 cut(s) 1171, 1184, 1318, 1523, 1563
SfiI GGCCNNNNNGGCC 1 cut(s) 375
SfuI TTCGAA 3 cut(s) 525, 675, 972
SinI GGWCC 1 cut(s) 498
SmiMI CAYNNNNRTG 1 cut(s) 944
SmlI CTYRAG 2 cut(s) 864, 1563
SmoI CTYRAG 2 cut(s) 864, 1563
SsiI CCGC 6 cut(s) 99, 358, 424, 692, 1412, 1442
SspMI CTAG 2 cut(s) 447, 1439
SstI GAGCTC 1 cut(s) 1452
StyD4I CCNGG 8 cut(s) 369, 378, 384, 390, 630, 1286, 1500, 1598
StyI CCWWGG 1 cut(s) 1470
TaaI ACNGT 4 cut(s) 106, 978, 1081, 1576
TaqI TCGA 4 cut(s) 525, 675, 972, 1612
TauI GCSGC 4 cut(s) 360, 426, 695, 1445
TfiI GAWTC 9 cut(s) 116, 131, 200, 535, 562, 661, 1150, 1212, 1520
Tru1I TTAA 3 cut(s) 240, 654, 923
Tru9I TTAA 3 cut(s) 240, 654, 923
TscAI CASTG 6 cut(s) 118, 133, 175, 202, 946, 1106
TseFI GTSAC 3 cut(s) 175, 752, 1576
TseI GCWGC 3 cut(s) 235, 443, 599
Tsp45I GTSAC 3 cut(s) 175, 752, 1576
TspDTI ATGAA 4 cut(s) 54, 623, 755, 1142
TspGWI ACGGA 3 cut(s) 956, 1232, 1339
TspRI CASTG 6 cut(s) 118, 133, 175, 202, 946, 1106
VpaK11BI GGWCC 1 cut(s) 498
XapI RAATTY 2 cut(s) 615, 1345
XmiI GTMKAC 1 cut(s) 779
XmnI GAANNNNTTC 1 cut(s) 273
XspI CTAG 2 cut(s) 447, 1439
Zsp2I ATGCAT 2 cut(s) 1056, 1177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.