ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 18 |
| AciI | CCGC | 3 cut(s) | 260, 706, 780 |
| AclWI | GGATC | 3 cut(s) | 35, 92, 421 |
| AcoI | YGGCCR | 1 cut(s) | 20 |
| AcsI | RAATTY | 3 cut(s) | 74, 312, 787 |
| AfaI | GTAC | 1 cut(s) | 635 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 18, 602, 603 |
| AjnI | CCWGG | 1 cut(s) | 289 |
| AluBI | AGCT | 4 cut(s) | 128, 176, 511, 527 |
| AluI | AGCT | 4 cut(s) | 128, 176, 511, 527 |
| Alw26I | GTCTC | 2 cut(s) | 604, 680 |
| AlwI | GGATC | 3 cut(s) | 35, 92, 421 |
| AoxI | GGCC | 6 cut(s) | 20, 261, 292, 739, 782, 816 |
| ApeKI | GCWGC | 1 cut(s) | 362 |
| ApoI | RAATTY | 3 cut(s) | 74, 312, 787 |
| AseI | ATTAAT | 2 cut(s) | 189, 567 |
| AspS9I | GGNCC | 3 cut(s) | 59, 740, 782 |
| AsuHPI | GGTGA | 2 cut(s) | 541, 640 |
| AvaII | GGWCC | 1 cut(s) | 59 |
| BalI | TGGCCA | 1 cut(s) | 22 |
| BanII | GRGCYC | 1 cut(s) | 280 |
| BbvI | GCAGC | 1 cut(s) | 374 |
| BciT130I | CCWGG | 1 cut(s) | 291 |
| BcoDI | GTCTC | 2 cut(s) | 604, 680 |
| BfaI | CTAG | 5 cut(s) | 84, 159, 296, 500, 820 |
| BglII | AGATCT | 1 cut(s) | 400 |
| BisI | GCNGC | 2 cut(s) | 261, 363 |
| BlsI | GCNGC | 2 cut(s) | 262, 364 |
| Bme1390I | CCNGG | 1 cut(s) | 291 |
| Bme18I | GGWCC | 1 cut(s) | 59 |
| BmgT120I | GGNCC | 3 cut(s) | 59, 740, 782 |
| BmiI | GGNNCC | 3 cut(s) | 61, 622, 742 |
| BmrFI | CCNGG | 1 cut(s) | 291 |
| BmsI | GCATC | 1 cut(s) | 247 |
| BpuEI | CTTGAG | 1 cut(s) | 583 |
| BsaBI | GATNNNNATC | 1 cut(s) | 39 |
| BsaI | GGTCTC | 1 cut(s) | 680 |
| BsaJI | CCNNGG | 1 cut(s) | 289 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 18, 602, 603 |
| Bse1I | ACTGG | 3 cut(s) | 194, 742, 802 |
| Bse8I | GATNNNNATC | 1 cut(s) | 39 |
| BseBI | CCWGG | 1 cut(s) | 291 |
| BseDI | CCNNGG | 1 cut(s) | 289 |
| BseGI | GGATG | 2 cut(s) | 262, 544 |
| BseJI | GATNNNNATC | 1 cut(s) | 39 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 18, 602, 603 |
| BseMII | CTCAG | 2 cut(s) | 293, 599 |
| BseNI | ACTGG | 3 cut(s) | 194, 742, 802 |
| BseXI | GCAGC | 1 cut(s) | 374 |
| BshFI | GGCC | 6 cut(s) | 22, 263, 294, 741, 784, 818 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 18, 602, 603 |
| BsmAI | GTCTC | 2 cut(s) | 604, 680 |
| BsnI | GGCC | 6 cut(s) | 22, 263, 294, 741, 784, 818 |
| Bso31I | GGTCTC | 1 cut(s) | 680 |
| Bsp1286I | GDGCHC | 1 cut(s) | 280 |
| Bsp143I | GATC | 4 cut(s) | 40, 97, 400, 426 |
| BspACI | CCGC | 3 cut(s) | 260, 706, 780 |
| BspANI | GGCC | 6 cut(s) | 22, 263, 294, 741, 784, 818 |
| BspCNI | CTCAG | 2 cut(s) | 292, 600 |
| BspLI | GGNNCC | 3 cut(s) | 61, 622, 742 |
| BspPI | GGATC | 3 cut(s) | 35, 92, 421 |
| BspTNI | GGTCTC | 1 cut(s) | 680 |
| BsrI | ACTGG | 3 cut(s) | 194, 742, 802 |
| BssECI | CCNNGG | 1 cut(s) | 289 |
| BssMI | GATC | 4 cut(s) | 40, 97, 400, 426 |
| Bst2UI | CCWGG | 1 cut(s) | 291 |
| Bst4CI | ACNGT | 2 cut(s) | 302, 814 |
| Bst6I | CTCTTC | 2 cut(s) | 644, 650 |
| BstC8I | GCNNGC | 1 cut(s) | 782 |
| BstDEI | CTNAG | 3 cut(s) | 279, 608, 654 |
| BstF5I | GGATG | 2 cut(s) | 262, 544 |
| BstKTI | GATC | 4 cut(s) | 43, 100, 403, 429 |
| BstMAI | GTCTC | 2 cut(s) | 604, 680 |
| BstMBI | GATC | 4 cut(s) | 40, 97, 400, 426 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 452 |
| BstNI | CCWGG | 1 cut(s) | 291 |
| BstSCI | CCNGG | 1 cut(s) | 289 |
| BstV1I | GCAGC | 1 cut(s) | 374 |
| BstX2I | RGATCY | 2 cut(s) | 97, 400 |
| BstYI | RGATCY | 2 cut(s) | 97, 400 |
| BsuRI | GGCC | 6 cut(s) | 22, 263, 294, 741, 784, 818 |
| BtgZI | GCGATG | 1 cut(s) | 782 |
| BtsCI | GGATG | 2 cut(s) | 262, 544 |
| BtsI | GCAGTG | 1 cut(s) | 564 |
| BtsIMutI | CAGTG | 4 cut(s) | 307, 564, 735, 819 |
| Cac8I | GCNNGC | 1 cut(s) | 782 |
| Cfr13I | GGNCC | 3 cut(s) | 59, 740, 782 |
| CseI | GACGC | 1 cut(s) | 218 |
| Csp6I | GTAC | 1 cut(s) | 634 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 400, 435 |
| CviAII | CATG | 4 cut(s) | 449, 517, 664, 697 |
| CviQI | GTAC | 1 cut(s) | 634 |
| DdeI | CTNAG | 3 cut(s) | 279, 608, 654 |
| DpnI | GATC | 4 cut(s) | 42, 99, 402, 428 |
| DpnII | GATC | 4 cut(s) | 40, 97, 400, 426 |
| EaeI | YGGCCR | 1 cut(s) | 20 |
| Eam1104I | CTCTTC | 2 cut(s) | 644, 650 |
| EarI | CTCTTC | 2 cut(s) | 644, 650 |
| Eco147I | AGGCCT | 1 cut(s) | 294 |
| Eco24I | GRGCYC | 1 cut(s) | 280 |
| Eco31I | GGTCTC | 1 cut(s) | 680 |
| Eco47I | GGWCC | 1 cut(s) | 59 |
| EcoO109I | RGGNCCY | 1 cut(s) | 59 |
| EcoRII | CCWGG | 1 cut(s) | 289 |
| EcoT38I | GRGCYC | 1 cut(s) | 280 |
| FaeI | CATG | 4 cut(s) | 452, 520, 667, 700 |
| FaiI | YATR | 9 cut(s) | 200, 309, 450, 518, 531, 626, 665, 698, 713 |
| FatI | CATG | 4 cut(s) | 448, 516, 663, 696 |
| FauI | CCCGC | 1 cut(s) | 773 |
| Fnu4HI | GCNGC | 2 cut(s) | 261, 363 |
| FokI | GGATG | 2 cut(s) | 269, 551 |
| FriOI | GRGCYC | 1 cut(s) | 280 |
| Fsp4HI | GCNGC | 2 cut(s) | 261, 363 |
| FspBI | CTAG | 5 cut(s) | 84, 159, 296, 500, 820 |
| GluI | GCNGC | 2 cut(s) | 261, 363 |
| HaeIII | GGCC | 6 cut(s) | 22, 263, 294, 741, 784, 818 |
| HgaI | GACGC | 1 cut(s) | 218 |
| Hin1II | CATG | 4 cut(s) | 452, 520, 667, 700 |
| HindIII | AAGCTT | 3 cut(s) | 126, 509, 525 |
| HinfI | GANTC | 2 cut(s) | 8, 542 |
| HphI | GGTGA | 2 cut(s) | 541, 640 |
| Hpy188I | TCNGA | 7 cut(s) | 124, 141, 205, 282, 324, 380, 405 |
| Hpy188III | TCNNGA | 4 cut(s) | 101, 179, 494, 600 |
| HpyAV | CCTTC | 2 cut(s) | 79, 471 |
| HpyCH4III | ACNGT | 2 cut(s) | 302, 814 |
| HpyCH4V | TGCA | 1 cut(s) | 557 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 452 |
| HpyF3I | CTNAG | 3 cut(s) | 279, 608, 654 |
| Hsp92II | CATG | 4 cut(s) | 452, 520, 667, 700 |
| Kzo9I | GATC | 4 cut(s) | 40, 97, 400, 426 |
| LmnI | GCTCC | 1 cut(s) | 626 |
| LpnPI | CCDG | 6 cut(s) | 114, 207, 276, 303, 723, 815 |
| Lsp1109I | GCAGC | 1 cut(s) | 374 |
| LweI | GCATC | 1 cut(s) | 247 |
| MaeI | CTAG | 5 cut(s) | 84, 159, 296, 500, 820 |
| MaeIII | GTNAC | 2 cut(s) | 547, 559 |
| MalI | GATC | 4 cut(s) | 42, 99, 402, 428 |
| MboI | GATC | 4 cut(s) | 40, 97, 400, 426 |
| MboII | GAAGA | 7 cut(s) | 107, 194, 257, 346, 410, 631, 637 |
| MfeI | CAATTG | 1 cut(s) | 441 |
| MflI | RGATCY | 2 cut(s) | 97, 400 |
| MhlI | GDGCHC | 1 cut(s) | 280 |
| MlsI | TGGCCA | 1 cut(s) | 22 |
| MluNI | TGGCCA | 1 cut(s) | 22 |
| MlyI | GAGTC | 1 cut(s) | 2 |
| MmeI | TCCRAC | 1 cut(s) | 68 |
| MnlI | CCTC | 8 cut(s) | 233, 596, 607, 611, 647, 653, 700, 704 |
| Mox20I | TGGCCA | 1 cut(s) | 22 |
| MscI | TGGCCA | 1 cut(s) | 22 |
| MseI | TTAA | 5 cut(s) | 144, 189, 354, 507, 567 |
| MslI | CAYNNNNRTG | 1 cut(s) | 668 |
| Msp20I | TGGCCA | 1 cut(s) | 22 |
| MspR9I | CCNGG | 1 cut(s) | 291 |
| MunI | CAATTG | 1 cut(s) | 441 |
| MvaI | CCWGG | 1 cut(s) | 291 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 452 |
| NdeII | GATC | 4 cut(s) | 40, 97, 400, 426 |
| NlaIII | CATG | 4 cut(s) | 452, 520, 667, 700 |
| NlaIV | GGNNCC | 3 cut(s) | 61, 622, 742 |
| NmuCI | GTSAC | 2 cut(s) | 547, 559 |
| PceI | AGGCCT | 1 cut(s) | 294 |
| PfeI | GAWTC | 1 cut(s) | 542 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 18 |
| PkrI | GCNGC | 2 cut(s) | 262, 364 |
| PleI | GAGTC | 1 cut(s) | 2 |
| PpsI | GAGTC | 1 cut(s) | 2 |
| PpuMI | RGGWCCY | 1 cut(s) | 59 |
| PshBI | ATTAAT | 2 cut(s) | 189, 567 |
| Psp5II | RGGWCCY | 1 cut(s) | 59 |
| Psp6I | CCWGG | 1 cut(s) | 289 |
| PspGI | CCWGG | 1 cut(s) | 289 |
| PspN4I | GGNNCC | 3 cut(s) | 61, 622, 742 |
| PspPI | GGNCC | 3 cut(s) | 59, 740, 782 |
| PspPPI | RGGWCCY | 1 cut(s) | 59 |
| PsuI | RGATCY | 2 cut(s) | 97, 400 |
| RsaI | GTAC | 1 cut(s) | 635 |
| RsaNI | GTAC | 1 cut(s) | 634 |
| RseI | CAYNNNNRTG | 1 cut(s) | 668 |
| SaqAI | TTAA | 5 cut(s) | 144, 189, 354, 507, 567 |
| SatI | GCNGC | 2 cut(s) | 261, 363 |
| Sau3AI | GATC | 4 cut(s) | 40, 97, 400, 426 |
| Sau96I | GGNCC | 3 cut(s) | 59, 740, 782 |
| SchI | GAGTC | 1 cut(s) | 2 |
| ScrFI | CCNGG | 1 cut(s) | 291 |
| SduI | GDGCHC | 1 cut(s) | 280 |
| SetI | ASST | 8 cut(s) | 85, 130, 178, 225, 513, 529, 554, 639 |
| SfaNI | GCATC | 1 cut(s) | 247 |
| SinI | GGWCC | 1 cut(s) | 59 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 668 |
| SmlI | CTYRAG | 1 cut(s) | 598 |
| SmoI | CTYRAG | 1 cut(s) | 598 |
| SseBI | AGGCCT | 1 cut(s) | 294 |
| SsiI | CCGC | 3 cut(s) | 260, 706, 780 |
| SspI | AATATT | 1 cut(s) | 371 |
| SspMI | CTAG | 5 cut(s) | 84, 159, 296, 500, 820 |
| StuI | AGGCCT | 1 cut(s) | 294 |
| StyD4I | CCNGG | 1 cut(s) | 289 |
| TaaI | ACNGT | 2 cut(s) | 302, 814 |
| TaqI | TCGA | 1 cut(s) | 761 |
| TauI | GCSGC | 1 cut(s) | 263 |
| TfiI | GAWTC | 1 cut(s) | 542 |
| Tru1I | TTAA | 5 cut(s) | 144, 189, 354, 507, 567 |
| Tru9I | TTAA | 5 cut(s) | 144, 189, 354, 507, 567 |
| TscAI | CASTG | 4 cut(s) | 307, 564, 742, 819 |
| TseFI | GTSAC | 2 cut(s) | 547, 559 |
| TseI | GCWGC | 1 cut(s) | 362 |
| Tsp45I | GTSAC | 2 cut(s) | 547, 559 |
| TspDTI | ATGAA | 2 cut(s) | 465, 555 |
| TspGWI | ACGGA | 1 cut(s) | 621 |
| TspRI | CASTG | 4 cut(s) | 307, 564, 742, 819 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 18 |
| VpaK11BI | GGWCC | 1 cut(s) | 59 |
| VspI | ATTAAT | 2 cut(s) | 189, 567 |
| XapI | RAATTY | 3 cut(s) | 74, 312, 787 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 667 |
| XspI | CTAG | 5 cut(s) | 84, 159, 296, 500, 820 |