Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| zf-RVT | PF13966 | 8 - 75 | 5.1e-15 | zinc-binding in reverse transcriptase |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 593 |
| AccIII | TCCGGA | 1 cut(s) | 547 |
| AciI | CCGC | 2 cut(s) | 98, 467 |
| AclWI | GGATC | 1 cut(s) | 257 |
| AcoI | YGGCCR | 1 cut(s) | 306 |
| AcsI | RAATTY | 1 cut(s) | 241 |
| AcuI | CTGAAG | 1 cut(s) | 275 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 211, 424, 521, 593 |
| AgsI | TTSAA | 4 cut(s) | 241, 395, 400, 463 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 396, 428 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 623, 655 |
| AluBI | AGCT | 2 cut(s) | 237, 647 |
| AluI | AGCT | 2 cut(s) | 237, 647 |
| Alw26I | GTCTC | 1 cut(s) | 170 |
| AlwI | GGATC | 1 cut(s) | 257 |
| Ama87I | CYCGRG | 1 cut(s) | 621 |
| Aor13HI | TCCGGA | 1 cut(s) | 547 |
| AoxI | GGCC | 1 cut(s) | 306 |
| ApeKI | GCWGC | 1 cut(s) | 647 |
| ApoI | RAATTY | 1 cut(s) | 241 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 133 |
| AspS9I | GGNCC | 2 cut(s) | 584, 657 |
| AsuHPI | GGTGA | 2 cut(s) | 337, 407 |
| AvaI | CYCGRG | 1 cut(s) | 621 |
| AvaII | GGWCC | 2 cut(s) | 584, 657 |
| BanII | GRGCYC | 1 cut(s) | 11 |
| BbsI | GAAGAC | 1 cut(s) | 89 |
| BbvI | GCAGC | 1 cut(s) | 634 |
| BccI | CCATC | 3 cut(s) | 525, 587, 626 |
| BcoDI | GTCTC | 1 cut(s) | 170 |
| BfaI | CTAG | 1 cut(s) | 438 |
| BglII | AGATCT | 1 cut(s) | 131 |
| BisI | GCNGC | 1 cut(s) | 648 |
| BlsI | GCNGC | 1 cut(s) | 649 |
| Bme18I | GGWCC | 2 cut(s) | 584, 657 |
| BmeT110I | CYCGRG | 1 cut(s) | 621 |
| BmgT120I | GGNCC | 2 cut(s) | 584, 657 |
| BmiI | GGNNCC | 4 cut(s) | 10, 54, 513, 585 |
| BmsI | GCATC | 1 cut(s) | 562 |
| BpiI | GAAGAC | 1 cut(s) | 89 |
| BsaJI | CCNNGG | 1 cut(s) | 309 |
| BsaWI | WCCGGW | 2 cut(s) | 547, 659 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 211, 424, 521, 593 |
| Bse3DI | GCAATG | 1 cut(s) | 348 |
| BseAI | TCCGGA | 1 cut(s) | 547 |
| BseDI | CCNNGG | 1 cut(s) | 309 |
| BseGI | GGATG | 3 cut(s) | 577, 631, 637 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 211, 424, 521, 593 |
| BseMI | GCAATG | 1 cut(s) | 348 |
| BseXI | GCAGC | 1 cut(s) | 634 |
| BshFI | GGCC | 1 cut(s) | 308 |
| BsiHKCI | CYCGRG | 1 cut(s) | 621 |
| BsiSI | CCGG | 2 cut(s) | 548, 660 |
| BslFI | GGGAC | 1 cut(s) | 597 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 211, 424, 521, 593 |
| BsmAI | GTCTC | 1 cut(s) | 170 |
| BsmFI | GGGAC | 1 cut(s) | 597 |
| BsmI | GAATGC | 1 cut(s) | 481 |
| BsnI | GGCC | 1 cut(s) | 308 |
| BsoBI | CYCGRG | 1 cut(s) | 621 |
| Bsp1286I | GDGCHC | 1 cut(s) | 11 |
| Bsp13I | TCCGGA | 1 cut(s) | 547 |
| Bsp143I | GATC | 2 cut(s) | 131, 249 |
| BspACI | CCGC | 2 cut(s) | 98, 467 |
| BspANI | GGCC | 1 cut(s) | 308 |
| BspEI | TCCGGA | 1 cut(s) | 547 |
| BspLI | GGNNCC | 4 cut(s) | 10, 54, 513, 585 |
| BspPI | GGATC | 1 cut(s) | 257 |
| BsrDI | GCAATG | 1 cut(s) | 348 |
| BssECI | CCNNGG | 1 cut(s) | 309 |
| BssMI | GATC | 2 cut(s) | 131, 249 |
| BssT1I | CCWWGG | 1 cut(s) | 309 |
| Bst4CI | ACNGT | 2 cut(s) | 181, 524 |
| BstC8I | GCNNGC | 1 cut(s) | 365 |
| BstDEI | CTNAG | 2 cut(s) | 318, 643 |
| BstF5I | GGATG | 3 cut(s) | 577, 631, 637 |
| BstKTI | GATC | 2 cut(s) | 134, 252 |
| BstMAI | GTCTC | 1 cut(s) | 170 |
| BstMBI | GATC | 2 cut(s) | 131, 249 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 110 |
| BstNSI | RCATGY | 1 cut(s) | 363 |
| BstV1I | GCAGC | 1 cut(s) | 634 |
| BstV2I | GAAGAC | 1 cut(s) | 89 |
| BstX2I | RGATCY | 1 cut(s) | 131 |
| BstYI | RGATCY | 1 cut(s) | 131 |
| BsuRI | GGCC | 1 cut(s) | 308 |
| BtsCI | GGATG | 3 cut(s) | 577, 631, 637 |
| Cac8I | GCNNGC | 1 cut(s) | 365 |
| Cfr13I | GGNCC | 2 cut(s) | 584, 657 |
| CviAII | CATG | 3 cut(s) | 92, 360, 496 |
| CviJI | RGCY | 7 cut(s) | 9, 237, 308, 437, 452, 620, 647 |
| CviKI_1 | RGCY | 7 cut(s) | 9, 237, 308, 437, 452, 620, 647 |
| DdeI | CTNAG | 2 cut(s) | 318, 643 |
| DpnI | GATC | 2 cut(s) | 133, 251 |
| DpnII | GATC | 2 cut(s) | 131, 249 |
| EaeI | YGGCCR | 1 cut(s) | 306 |
| Eco130I | CCWWGG | 1 cut(s) | 309 |
| Eco24I | GRGCYC | 1 cut(s) | 11 |
| Eco47I | GGWCC | 2 cut(s) | 584, 657 |
| Eco57I | CTGAAG | 1 cut(s) | 275 |
| Eco88I | CYCGRG | 1 cut(s) | 621 |
| EcoT14I | CCWWGG | 1 cut(s) | 309 |
| EcoT38I | GRGCYC | 1 cut(s) | 11 |
| ErhI | CCWWGG | 1 cut(s) | 309 |
| FaeI | CATG | 3 cut(s) | 95, 363, 499 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 118, 150 |
| FaqI | GGGAC | 1 cut(s) | 597 |
| FatI | CATG | 3 cut(s) | 91, 359, 495 |
| Fnu4HI | GCNGC | 1 cut(s) | 648 |
| FokI | GGATG | 3 cut(s) | 584, 638, 644 |
| FriOI | GRGCYC | 1 cut(s) | 11 |
| Fsp4HI | GCNGC | 1 cut(s) | 648 |
| FspBI | CTAG | 1 cut(s) | 438 |
| GluI | GCNGC | 1 cut(s) | 648 |
| HaeIII | GGCC | 1 cut(s) | 308 |
| HapII | CCGG | 2 cut(s) | 548, 660 |
| Hin1II | CATG | 3 cut(s) | 95, 363, 499 |
| HindIII | AAGCTT | 1 cut(s) | 235 |
| HinfI | GANTC | 4 cut(s) | 85, 302, 412, 544 |
| HpaII | CCGG | 2 cut(s) | 548, 660 |
| HphI | GGTGA | 2 cut(s) | 337, 407 |
| Hpy188I | TCNGA | 4 cut(s) | 258, 294, 473, 511 |
| Hpy188III | TCNNGA | 4 cut(s) | 17, 381, 548, 623 |
| HpyAV | CCTTC | 2 cut(s) | 150, 469 |
| HpyCH4III | ACNGT | 2 cut(s) | 181, 524 |
| HpyCH4IV | ACGT | 1 cut(s) | 567 |
| HpyCH4V | TGCA | 2 cut(s) | 481, 575 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 110 |
| HpyF3I | CTNAG | 2 cut(s) | 318, 643 |
| HpySE526I | ACGT | 1 cut(s) | 567 |
| Hsp92II | CATG | 3 cut(s) | 95, 363, 499 |
| Kpn2I | TCCGGA | 1 cut(s) | 547 |
| Kzo9I | GATC | 2 cut(s) | 131, 249 |
| LmnI | GCTCC | 1 cut(s) | 14 |
| LpnPI | CCDG | 9 cut(s) | 30, 214, 218, 349, 410, 514, 561, 584, 636 |
| Lsp1109I | GCAGC | 1 cut(s) | 634 |
| LweI | GCATC | 1 cut(s) | 562 |
| MaeI | CTAG | 1 cut(s) | 438 |
| MaeII | ACGT | 1 cut(s) | 567 |
| MalI | GATC | 2 cut(s) | 133, 251 |
| MboI | GATC | 2 cut(s) | 131, 249 |
| MboII | GAAGA | 3 cut(s) | 94, 126, 141 |
| MfeI | CAATTG | 1 cut(s) | 516 |
| MflI | RGATCY | 1 cut(s) | 131 |
| MhlI | GDGCHC | 1 cut(s) | 11 |
| MluCI | AATT | 8 cut(s) | 31, 63, 241, 280, 388, 395, 516, 561 |
| MlyI | GAGTC | 2 cut(s) | 79, 553 |
| MmeI | TCCRAC | 1 cut(s) | 489 |
| MnlI | CCTC | 4 cut(s) | 43, 240, 316, 622 |
| MroI | TCCGGA | 1 cut(s) | 547 |
| MroXI | GAANNNNTTC | 1 cut(s) | 133 |
| MseI | TTAA | 1 cut(s) | 564 |
| MspI | CCGG | 2 cut(s) | 548, 660 |
| MunI | CAATTG | 1 cut(s) | 516 |
| Mva1269I | GAATGC | 1 cut(s) | 481 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 110 |
| NdeII | GATC | 2 cut(s) | 131, 249 |
| NlaIII | CATG | 3 cut(s) | 95, 363, 499 |
| NlaIV | GGNNCC | 4 cut(s) | 10, 54, 513, 585 |
| NspI | RCATGY | 1 cut(s) | 363 |
| PctI | GAATGC | 1 cut(s) | 481 |
| PdmI | GAANNNNTTC | 1 cut(s) | 133 |
| PfeI | GAWTC | 2 cut(s) | 302, 412 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 593 |
| PkrI | GCNGC | 1 cut(s) | 649 |
| PleI | GAGTC | 2 cut(s) | 79, 552 |
| PpsI | GAGTC | 2 cut(s) | 79, 552 |
| PspN4I | GGNNCC | 4 cut(s) | 10, 54, 513, 585 |
| PspPI | GGNCC | 2 cut(s) | 584, 657 |
| PsuI | RGATCY | 1 cut(s) | 131 |
| SaqAI | TTAA | 1 cut(s) | 564 |
| SatI | GCNGC | 1 cut(s) | 648 |
| Sau3AI | GATC | 2 cut(s) | 131, 249 |
| Sau96I | GGNCC | 2 cut(s) | 584, 657 |
| SchI | GAGTC | 2 cut(s) | 79, 553 |
| SduI | GDGCHC | 1 cut(s) | 11 |
| SetI | ASST | 8 cut(s) | 54, 239, 327, 429, 461, 570, 649, 659 |
| SfaNI | GCATC | 1 cut(s) | 562 |
| SinI | GGWCC | 2 cut(s) | 584, 657 |
| Sse9I | AATT | 8 cut(s) | 31, 63, 241, 280, 388, 395, 516, 561 |
| SsiI | CCGC | 2 cut(s) | 98, 467 |
| SspMI | CTAG | 1 cut(s) | 438 |
| StyI | CCWWGG | 1 cut(s) | 309 |
| TaaI | ACNGT | 2 cut(s) | 181, 524 |
| TaiI | ACGT | 1 cut(s) | 570 |
| TasI | AATT | 8 cut(s) | 31, 63, 241, 280, 388, 395, 516, 561 |
| TfiI | GAWTC | 2 cut(s) | 302, 412 |
| Tru1I | TTAA | 1 cut(s) | 564 |
| Tru9I | TTAA | 1 cut(s) | 564 |
| TseI | GCWGC | 1 cut(s) | 647 |
| TspDTI | ATGAA | 1 cut(s) | 333 |
| TspGWI | ACGGA | 1 cut(s) | 275 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 593 |
| VpaK11BI | GGWCC | 2 cut(s) | 584, 657 |
| XapI | RAATTY | 1 cut(s) | 241 |
| XceI | RCATGY | 1 cut(s) | 363 |
| XmnI | GAANNNNTTC | 1 cut(s) | 133 |
| XspI | CTAG | 1 cut(s) | 438 |