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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 18, 372 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 363 |
| AatII | GACGTC | 1 cut(s) | 361 |
| AciI | CCGC | 3 cut(s) | 311, 520, 647 |
| AclWI | GGATC | 2 cut(s) | 657, 689 |
| AcoI | YGGCCR | 1 cut(s) | 312 |
| AcsI | RAATTY | 3 cut(s) | 32, 170, 394 |
| AcvI | CACGTG | 2 cut(s) | 389, 407 |
| AcyI | GRCGYC | 1 cut(s) | 358 |
| AdeI | CACNNNGTG | 1 cut(s) | 407 |
| AfaI | GTAC | 1 cut(s) | 124 |
| AgsI | TTSAA | 3 cut(s) | 199, 352, 703 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 610 |
| AjnI | CCWGG | 1 cut(s) | 676 |
| AluBI | AGCT | 4 cut(s) | 98, 227, 640, 644 |
| AluI | AGCT | 4 cut(s) | 98, 227, 640, 644 |
| AlwI | GGATC | 2 cut(s) | 657, 689 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 98, 137 |
| AoxI | GGCC | 5 cut(s) | 60, 266, 312, 436, 481 |
| ApeKI | GCWGC | 3 cut(s) | 49, 633, 644 |
| ApoI | RAATTY | 3 cut(s) | 32, 170, 394 |
| AspLEI | GCGC | 3 cut(s) | 54, 538, 720 |
| AspS9I | GGNCC | 3 cut(s) | 60, 365, 482 |
| AsuHPI | GGTGA | 1 cut(s) | 488 |
| AsuNHI | GCTAGC | 1 cut(s) | 640 |
| AvaII | GGWCC | 1 cut(s) | 365 |
| BbrPI | CACGTG | 2 cut(s) | 389, 407 |
| BbsI | GAAGAC | 1 cut(s) | 119 |
| BbvI | GCAGC | 3 cut(s) | 36, 631, 645 |
| BccI | CCATC | 1 cut(s) | 473 |
| BceAI | ACGGC | 1 cut(s) | 511 |
| BciT130I | CCWGG | 1 cut(s) | 678 |
| BfaI | CTAG | 1 cut(s) | 641 |
| BfoI | RGCGCY | 1 cut(s) | 721 |
| BglII | AGATCT | 1 cut(s) | 87 |
| BisI | GCNGC | 4 cut(s) | 50, 312, 634, 645 |
| BlsI | GCNGC | 4 cut(s) | 51, 313, 635, 646 |
| BmcAI | AGTACT | 1 cut(s) | 124 |
| Bme1390I | CCNGG | 1 cut(s) | 678 |
| Bme18I | GGWCC | 1 cut(s) | 365 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 610 |
| BmgT120I | GGNCC | 3 cut(s) | 60, 365, 482 |
| BmiI | GGNNCC | 1 cut(s) | 366 |
| BmrFI | CCNGG | 1 cut(s) | 678 |
| BmsI | GCATC | 2 cut(s) | 36, 143 |
| BmtI | GCTAGC | 1 cut(s) | 644 |
| BpiI | GAAGAC | 1 cut(s) | 119 |
| BsaAI | YACGTR | 2 cut(s) | 389, 407 |
| BsaHI | GRCGYC | 1 cut(s) | 358 |
| BsaJI | CCNNGG | 2 cut(s) | 439, 677 |
| Bse1I | ACTGG | 1 cut(s) | 568 |
| BseBI | CCWGG | 1 cut(s) | 678 |
| BseDI | CCNNGG | 2 cut(s) | 439, 677 |
| BseMII | CTCAG | 2 cut(s) | 105, 219 |
| BseNI | ACTGG | 1 cut(s) | 568 |
| BseRI | GAGGAG | 1 cut(s) | 206 |
| BseXI | GCAGC | 3 cut(s) | 36, 631, 645 |
| BshFI | GGCC | 5 cut(s) | 62, 268, 314, 438, 483 |
| BsiSI | CCGG | 1 cut(s) | 273 |
| BslFI | GGGAC | 1 cut(s) | 519 |
| BsmFI | GGGAC | 1 cut(s) | 519 |
| BsnI | GGCC | 5 cut(s) | 62, 268, 314, 438, 483 |
| Bsp143I | GATC | 3 cut(s) | 87, 649, 681 |
| Bsp19I | CCATGG | 1 cut(s) | 439 |
| BspACI | CCGC | 3 cut(s) | 311, 520, 647 |
| BspANI | GGCC | 5 cut(s) | 62, 268, 314, 438, 483 |
| BspCNI | CTCAG | 2 cut(s) | 104, 220 |
| BspLI | GGNNCC | 1 cut(s) | 366 |
| BspOI | GCTAGC | 1 cut(s) | 644 |
| BspPI | GGATC | 2 cut(s) | 657, 689 |
| BsrI | ACTGG | 1 cut(s) | 568 |
| BssECI | CCNNGG | 2 cut(s) | 439, 677 |
| BssMI | GATC | 3 cut(s) | 87, 649, 681 |
| BssNI | GRCGYC | 1 cut(s) | 358 |
| BssT1I | CCWWGG | 1 cut(s) | 439 |
| Bst2UI | CCWGG | 1 cut(s) | 678 |
| Bst4CI | ACNGT | 1 cut(s) | 590 |
| Bst6I | CTCTTC | 1 cut(s) | 406 |
| BstACI | GRCGYC | 1 cut(s) | 358 |
| BstBAI | YACGTR | 2 cut(s) | 389, 407 |
| BstC8I | GCNNGC | 4 cut(s) | 270, 631, 638, 642 |
| BstDEI | CTNAG | 2 cut(s) | 91, 228 |
| BstDSI | CCRYGG | 1 cut(s) | 439 |
| BstH2I | RGCGCY | 1 cut(s) | 721 |
| BstHHI | GCGC | 3 cut(s) | 54, 538, 720 |
| BstKTI | GATC | 3 cut(s) | 90, 652, 684 |
| BstMBI | GATC | 3 cut(s) | 87, 649, 681 |
| BstNI | CCWGG | 1 cut(s) | 678 |
| BstSCI | CCNGG | 1 cut(s) | 676 |
| BstV1I | GCAGC | 3 cut(s) | 36, 631, 645 |
| BstV2I | GAAGAC | 1 cut(s) | 119 |
| BstX2I | RGATCY | 1 cut(s) | 87 |
| BstYI | RGATCY | 1 cut(s) | 87 |
| BsuRI | GGCC | 5 cut(s) | 62, 268, 314, 438, 483 |
| BtgI | CCRYGG | 1 cut(s) | 439 |
| Cac8I | GCNNGC | 4 cut(s) | 270, 631, 638, 642 |
| CaiI | CAGNNNCTG | 2 cut(s) | 98, 137 |
| CfoI | GCGC | 3 cut(s) | 54, 538, 720 |
| Cfr13I | GGNCC | 3 cut(s) | 60, 365, 482 |
| Csp6I | GTAC | 1 cut(s) | 123 |
| CviAII | CATG | 7 cut(s) | 64, 142, 440, 449, 539, 551, 582 |
| CviJI | RGCY | 9 cut(s) | 62, 98, 227, 268, 314, 438, 483, 640, 644 |
| CviKI_1 | RGCY | 9 cut(s) | 62, 98, 227, 268, 314, 438, 483, 640, 644 |
| CviQI | GTAC | 1 cut(s) | 123 |
| DdeI | CTNAG | 2 cut(s) | 91, 228 |
| DpnI | GATC | 3 cut(s) | 89, 651, 683 |
| DpnII | GATC | 3 cut(s) | 87, 649, 681 |
| DraI | TTTAAA | 1 cut(s) | 252 |
| DraIII | CACNNNGTG | 1 cut(s) | 407 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 363 |
| DriI | GACNNNNNGTC | 1 cut(s) | 610 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 363 |
| EaeI | YGGCCR | 1 cut(s) | 312 |
| Eam1104I | CTCTTC | 1 cut(s) | 406 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 610 |
| EarI | CTCTTC | 1 cut(s) | 406 |
| Eco130I | CCWWGG | 1 cut(s) | 439 |
| Eco147I | AGGCCT | 1 cut(s) | 268 |
| Eco47I | GGWCC | 1 cut(s) | 365 |
| Eco72I | CACGTG | 2 cut(s) | 389, 407 |
| EcoO109I | RGGNCCY | 1 cut(s) | 365 |
| EcoRII | CCWGG | 1 cut(s) | 676 |
| EcoT14I | CCWWGG | 1 cut(s) | 439 |
| ErhI | CCWWGG | 1 cut(s) | 439 |
| FaeI | CATG | 7 cut(s) | 67, 145, 443, 452, 542, 554, 585 |
| FaqI | GGGAC | 1 cut(s) | 519 |
| FatI | CATG | 7 cut(s) | 63, 141, 439, 448, 538, 550, 581 |
| FauI | CCCGC | 1 cut(s) | 527 |
| Fnu4HI | GCNGC | 4 cut(s) | 50, 312, 634, 645 |
| Fsp4HI | GCNGC | 4 cut(s) | 50, 312, 634, 645 |
| FspBI | CTAG | 1 cut(s) | 641 |
| GlaI | GCGC | 3 cut(s) | 53, 537, 719 |
| GluI | GCNGC | 4 cut(s) | 50, 312, 634, 645 |
| HaeII | RGCGCY | 1 cut(s) | 721 |
| HaeIII | GGCC | 5 cut(s) | 62, 268, 314, 438, 483 |
| HapII | CCGG | 1 cut(s) | 273 |
| HhaI | GCGC | 3 cut(s) | 54, 538, 720 |
| Hin1I | GRCGYC | 1 cut(s) | 358 |
| Hin1II | CATG | 7 cut(s) | 67, 145, 443, 452, 542, 554, 585 |
| Hin6I | GCGC | 3 cut(s) | 52, 536, 718 |
| HinP1I | GCGC | 3 cut(s) | 52, 536, 718 |
| HinfI | GANTC | 3 cut(s) | 6, 186, 597 |
| HpaII | CCGG | 1 cut(s) | 273 |
| HphI | GGTGA | 1 cut(s) | 488 |
| Hpy188I | TCNGA | 3 cut(s) | 43, 94, 654 |
| Hpy188III | TCNNGA | 4 cut(s) | 290, 380, 556, 685 |
| HpyAV | CCTTC | 1 cut(s) | 703 |
| HpyCH4III | ACNGT | 1 cut(s) | 590 |
| HpyCH4IV | ACGT | 4 cut(s) | 358, 388, 406, 427 |
| HpyCH4V | TGCA | 4 cut(s) | 70, 401, 452, 515 |
| HpyF3I | CTNAG | 2 cut(s) | 91, 228 |
| HpySE526I | ACGT | 4 cut(s) | 358, 388, 406, 427 |
| Hsp92I | GRCGYC | 1 cut(s) | 358 |
| Hsp92II | CATG | 7 cut(s) | 67, 145, 443, 452, 542, 554, 585 |
| HspAI | GCGC | 3 cut(s) | 52, 536, 718 |
| Kzo9I | GATC | 3 cut(s) | 87, 649, 681 |
| Lsp1109I | GCAGC | 3 cut(s) | 36, 631, 645 |
| LweI | GCATC | 2 cut(s) | 36, 143 |
| MaeI | CTAG | 1 cut(s) | 641 |
| MaeII | ACGT | 4 cut(s) | 358, 388, 406, 427 |
| MaeIII | GTNAC | 2 cut(s) | 491, 584 |
| MalI | GATC | 3 cut(s) | 89, 651, 683 |
| MboI | GATC | 3 cut(s) | 87, 649, 681 |
| MboII | GAAGA | 4 cut(s) | 124, 423, 715, 718 |
| MflI | RGATCY | 1 cut(s) | 87 |
| MluCI | AATT | 9 cut(s) | 32, 37, 71, 105, 170, 298, 346, 394, 619 |
| MnlI | CCTC | 8 cut(s) | 224, 227, 314, 407, 416, 428, 437, 537 |
| MseI | TTAA | 4 cut(s) | 36, 210, 251, 339 |
| MslI | CAYNNNNRTG | 1 cut(s) | 453 |
| MspA1I | CMGCKG | 1 cut(s) | 227 |
| MspI | CCGG | 1 cut(s) | 273 |
| MspR9I | CCNGG | 1 cut(s) | 678 |
| MvaI | CCWGG | 1 cut(s) | 678 |
| NcoI | CCATGG | 1 cut(s) | 439 |
| NdeII | GATC | 3 cut(s) | 87, 649, 681 |
| NheI | GCTAGC | 1 cut(s) | 640 |
| NlaIII | CATG | 7 cut(s) | 67, 145, 443, 452, 542, 554, 585 |
| NlaIV | GGNNCC | 1 cut(s) | 366 |
| PceI | AGGCCT | 1 cut(s) | 268 |
| PfeI | GAWTC | 2 cut(s) | 186, 597 |
| PkrI | GCNGC | 4 cut(s) | 51, 313, 635, 646 |
| PmaCI | CACGTG | 2 cut(s) | 389, 407 |
| PmlI | CACGTG | 2 cut(s) | 389, 407 |
| Ppu21I | YACGTR | 2 cut(s) | 389, 407 |
| PpuMI | RGGWCCY | 1 cut(s) | 365 |
| PsiI | TTATAA | 2 cut(s) | 18, 372 |
| Psp5II | RGGWCCY | 1 cut(s) | 365 |
| Psp6I | CCWGG | 1 cut(s) | 676 |
| PspCI | CACGTG | 2 cut(s) | 389, 407 |
| PspGI | CCWGG | 1 cut(s) | 676 |
| PspN4I | GGNNCC | 1 cut(s) | 366 |
| PspPI | GGNCC | 3 cut(s) | 60, 365, 482 |
| PspPPI | RGGWCCY | 1 cut(s) | 365 |
| PstNI | CAGNNNCTG | 2 cut(s) | 98, 137 |
| PsuI | RGATCY | 1 cut(s) | 87 |
| PvuII | CAGCTG | 1 cut(s) | 227 |
| RsaI | GTAC | 1 cut(s) | 124 |
| RsaNI | GTAC | 1 cut(s) | 123 |
| RseI | CAYNNNNRTG | 1 cut(s) | 453 |
| SaqAI | TTAA | 4 cut(s) | 36, 210, 251, 339 |
| SatI | GCNGC | 4 cut(s) | 50, 312, 634, 645 |
| Sau3AI | GATC | 3 cut(s) | 87, 649, 681 |
| Sau96I | GGNCC | 3 cut(s) | 60, 365, 482 |
| ScaI | AGTACT | 1 cut(s) | 124 |
| ScrFI | CCNGG | 1 cut(s) | 678 |
| SfaNI | GCATC | 2 cut(s) | 36, 143 |
| SinI | GGWCC | 1 cut(s) | 365 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 453 |
| Sse9I | AATT | 9 cut(s) | 32, 37, 71, 105, 170, 298, 346, 394, 619 |
| SseBI | AGGCCT | 1 cut(s) | 268 |
| SsiI | CCGC | 3 cut(s) | 311, 520, 647 |
| SspI | AATATT | 1 cut(s) | 699 |
| SspMI | CTAG | 1 cut(s) | 641 |
| StuI | AGGCCT | 1 cut(s) | 268 |
| StyD4I | CCNGG | 1 cut(s) | 676 |
| StyI | CCWWGG | 1 cut(s) | 439 |
| TaaI | ACNGT | 1 cut(s) | 590 |
| TaiI | ACGT | 4 cut(s) | 361, 391, 409, 430 |
| TasI | AATT | 9 cut(s) | 32, 37, 71, 105, 170, 298, 346, 394, 619 |
| TatI | WGTACW | 1 cut(s) | 122 |
| TauI | GCSGC | 1 cut(s) | 314 |
| TfiI | GAWTC | 2 cut(s) | 186, 597 |
| Tru1I | TTAA | 4 cut(s) | 36, 210, 251, 339 |
| Tru9I | TTAA | 4 cut(s) | 36, 210, 251, 339 |
| TseI | GCWGC | 3 cut(s) | 49, 633, 644 |
| TspDTI | ATGAA | 1 cut(s) | 591 |
| VpaK11BI | GGWCC | 1 cut(s) | 365 |
| XapI | RAATTY | 3 cut(s) | 32, 170, 394 |
| XspI | CTAG | 1 cut(s) | 641 |
| ZraI | GACGTC | 1 cut(s) | 359 |
| ZrmI | AGTACT | 1 cut(s) | 124 |