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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1047 |
| AccB1I | GGYRCC | 1 cut(s) | 1138 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1083 |
| AccI | GTMKAC | 1 cut(s) | 657 |
| AccIII | TCCGGA | 1 cut(s) | 428 |
| AciI | CCGC | 3 cut(s) | 47, 286, 420 |
| AclWI | GGATC | 3 cut(s) | 115, 136, 995 |
| AcoI | YGGCCR | 2 cut(s) | 3, 44 |
| AcsI | RAATTY | 2 cut(s) | 511, 930 |
| AcuI | CTGAAG | 2 cut(s) | 543, 765 |
| AfaI | GTAC | 1 cut(s) | 861 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 104, 125, 947, 1083 |
| AflII | CTTAAG | 1 cut(s) | 11 |
| AflIII | ACRYGT | 2 cut(s) | 575, 994 |
| AgsI | TTSAA | 4 cut(s) | 485, 511, 844, 898 |
| AjiI | CACGTC | 3 cut(s) | 578, 710, 995 |
| AjnI | CCWGG | 1 cut(s) | 119 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 423, 455, 536, 568 |
| AluBI | AGCT | 8 cut(s) | 23, 80, 113, 171, 181, 665, 670, 850 |
| AluI | AGCT | 8 cut(s) | 23, 80, 113, 171, 181, 665, 670, 850 |
| Alw21I | GWGCWC | 4 cut(s) | 25, 82, 173, 672 |
| Alw26I | GTCTC | 3 cut(s) | 400, 584, 716 |
| AlwI | GGATC | 3 cut(s) | 115, 136, 995 |
| Aor13HI | TCCGGA | 1 cut(s) | 428 |
| AoxI | GGCC | 8 cut(s) | 3, 7, 44, 144, 911, 1060, 1069, 1105 |
| ApeKI | GCWGC | 1 cut(s) | 181 |
| ApoI | RAATTY | 2 cut(s) | 511, 930 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 478, 510, 536, 568 |
| AspLEI | GCGC | 1 cut(s) | 1089 |
| AspS9I | GGNCC | 5 cut(s) | 234, 912, 1060, 1070, 1106 |
| AsuHPI | GGTGA | 2 cut(s) | 331, 542 |
| AsuII | TTCGAA | 2 cut(s) | 161, 675 |
| AvaII | GGWCC | 1 cut(s) | 234 |
| BanI | GGYRCC | 1 cut(s) | 1138 |
| BanII | GRGCYC | 4 cut(s) | 25, 82, 173, 672 |
| BbsI | GAAGAC | 1 cut(s) | 84 |
| Bbv12I | GWGCWC | 4 cut(s) | 25, 82, 173, 672 |
| BbvI | GCAGC | 1 cut(s) | 168 |
| BccI | CCATC | 3 cut(s) | 80, 691, 1088 |
| BceAI | ACGGC | 1 cut(s) | 1047 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 432, 466 |
| BciT130I | CCWGG | 1 cut(s) | 121 |
| BclI | TGATCA | 1 cut(s) | 852 |
| BcoDI | GTCTC | 3 cut(s) | 400, 584, 716 |
| BfaI | CTAG | 2 cut(s) | 794, 1110 |
| BfrI | CTTAAG | 1 cut(s) | 11 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1068 |
| BisI | GCNGC | 3 cut(s) | 47, 182, 421 |
| BlpI | GCTNAGC | 1 cut(s) | 666 |
| BlsI | GCNGC | 3 cut(s) | 48, 183, 422 |
| Bme1390I | CCNGG | 1 cut(s) | 121 |
| Bme18I | GGWCC | 1 cut(s) | 234 |
| BmgBI | CACGTC | 3 cut(s) | 578, 710, 995 |
| BmgT120I | GGNCC | 5 cut(s) | 234, 912, 1060, 1070, 1106 |
| BmiI | GGNNCC | 1 cut(s) | 1140 |
| BmrFI | CCNGG | 1 cut(s) | 121 |
| BmsI | GCATC | 2 cut(s) | 432, 610 |
| BpiI | GAAGAC | 1 cut(s) | 84 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 654, 686 |
| BpmI | CTGGAG | 1 cut(s) | 833 |
| Bpu10I | CCTNAGC | 1 cut(s) | 191 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 666 |
| Bpu14I | TTCGAA | 2 cut(s) | 161, 675 |
| BsaAI | YACGTR | 1 cut(s) | 1031 |
| BsaI | GGTCTC | 1 cut(s) | 400 |
| BsaJI | CCNNGG | 1 cut(s) | 119 |
| BsaWI | WCCGGW | 2 cut(s) | 236, 428 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 104, 125, 947, 1083 |
| Bse118I | RCCGGY | 2 cut(s) | 5, 597 |
| Bse1I | ACTGG | 1 cut(s) | 802 |
| Bse3DI | GCAATG | 1 cut(s) | 975 |
| BseAI | TCCGGA | 1 cut(s) | 428 |
| BseBI | CCWGG | 1 cut(s) | 121 |
| BseDI | CCNNGG | 1 cut(s) | 119 |
| BseGI | GGATG | 2 cut(s) | 60, 601 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 104, 125, 947, 1083 |
| BseMI | GCAATG | 1 cut(s) | 975 |
| BseMII | CTCAG | 4 cut(s) | 158, 393, 657, 927 |
| BseNI | ACTGG | 1 cut(s) | 802 |
| BseRI | GAGGAG | 3 cut(s) | 329, 388, 391 |
| BseXI | GCAGC | 1 cut(s) | 168 |
| BshFI | GGCC | 8 cut(s) | 5, 9, 46, 146, 913, 1062, 1071, 1107 |
| BshNI | GGYRCC | 1 cut(s) | 1138 |
| BsiHKAI | GWGCWC | 4 cut(s) | 25, 82, 173, 672 |
| BsiSI | CCGG | 4 cut(s) | 6, 237, 429, 598 |
| BslFI | GGGAC | 1 cut(s) | 1053 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 104, 125, 947, 1083 |
| BsmAI | GTCTC | 3 cut(s) | 400, 584, 716 |
| BsmBI | CGTCTC | 2 cut(s) | 584, 716 |
| BsmFI | GGGAC | 1 cut(s) | 1053 |
| BsnI | GGCC | 8 cut(s) | 5, 9, 46, 146, 913, 1062, 1071, 1107 |
| Bso31I | GGTCTC | 1 cut(s) | 400 |
| Bsp119I | TTCGAA | 2 cut(s) | 161, 675 |
| Bsp1286I | GDGCHC | 4 cut(s) | 25, 82, 173, 672 |
| Bsp13I | TCCGGA | 1 cut(s) | 428 |
| Bsp143I | GATC | 5 cut(s) | 102, 107, 128, 852, 1000 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 666 |
| BspACI | CCGC | 3 cut(s) | 47, 286, 420 |
| BspANI | GGCC | 8 cut(s) | 5, 9, 46, 146, 913, 1062, 1071, 1107 |
| BspCNI | CTCAG | 4 cut(s) | 159, 394, 658, 928 |
| BspEI | TCCGGA | 1 cut(s) | 428 |
| BspHI | TCATGA | 1 cut(s) | 568 |
| BspLI | GGNNCC | 1 cut(s) | 1140 |
| BspPI | GGATC | 3 cut(s) | 115, 136, 995 |
| BspQI | GCTCTTC | 1 cut(s) | 677 |
| BspT104I | TTCGAA | 2 cut(s) | 161, 675 |
| BspT107I | GGYRCC | 1 cut(s) | 1138 |
| BspTI | CTTAAG | 1 cut(s) | 11 |
| BspTNI | GGTCTC | 1 cut(s) | 400 |
| BsrDI | GCAATG | 1 cut(s) | 975 |
| BsrFI | RCCGGY | 2 cut(s) | 5, 597 |
| BsrI | ACTGG | 1 cut(s) | 802 |
| BssAI | RCCGGY | 2 cut(s) | 5, 597 |
| BssECI | CCNNGG | 1 cut(s) | 119 |
| BssMI | GATC | 5 cut(s) | 102, 107, 128, 852, 1000 |
| Bst2UI | CCWGG | 1 cut(s) | 121 |
| Bst4CI | ACNGT | 1 cut(s) | 655 |
| Bst6I | CTCTTC | 4 cut(s) | 298, 326, 635, 677 |
| BstAFI | CTTAAG | 1 cut(s) | 11 |
| BstBAI | YACGTR | 1 cut(s) | 1031 |
| BstBI | TTCGAA | 2 cut(s) | 161, 675 |
| BstC8I | GCNNGC | 4 cut(s) | 7, 455, 599, 1105 |
| BstDEI | CTNAG | 7 cut(s) | 167, 191, 402, 458, 666, 936, 1143 |
| BstF5I | GGATG | 2 cut(s) | 60, 601 |
| BstHHI | GCGC | 1 cut(s) | 1089 |
| BstKTI | GATC | 5 cut(s) | 105, 110, 131, 855, 1003 |
| BstMAI | GTCTC | 3 cut(s) | 400, 584, 716 |
| BstMBI | GATC | 5 cut(s) | 102, 107, 128, 852, 1000 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 1068 |
| BstNI | CCWGG | 1 cut(s) | 121 |
| BstSCI | CCNGG | 1 cut(s) | 119 |
| BstV1I | GCAGC | 1 cut(s) | 168 |
| BstV2I | GAAGAC | 1 cut(s) | 84 |
| BsuRI | GGCC | 8 cut(s) | 5, 9, 46, 146, 913, 1062, 1071, 1107 |
| BtrI | CACGTC | 3 cut(s) | 578, 710, 995 |
| BtsCI | GGATG | 2 cut(s) | 60, 601 |
| BtsIMutI | CAGTG | 1 cut(s) | 651 |
| Cac8I | GCNNGC | 4 cut(s) | 7, 455, 599, 1105 |
| CciI | TCATGA | 1 cut(s) | 568 |
| CfoI | GCGC | 1 cut(s) | 1089 |
| Cfr10I | RCCGGY | 2 cut(s) | 5, 597 |
| Cfr13I | GGNCC | 5 cut(s) | 234, 912, 1060, 1070, 1106 |
| Csp6I | GTAC | 1 cut(s) | 860 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 703, 738 |
| CviAII | CATG | 4 cut(s) | 569, 1011, 1043, 1118 |
| CviQI | GTAC | 1 cut(s) | 860 |
| DdeI | CTNAG | 7 cut(s) | 167, 191, 402, 458, 666, 936, 1143 |
| DpnI | GATC | 5 cut(s) | 104, 109, 130, 854, 1002 |
| DpnII | GATC | 5 cut(s) | 102, 107, 128, 852, 1000 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1047 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1047 |
| EaeI | YGGCCR | 2 cut(s) | 3, 44 |
| Eam1104I | CTCTTC | 4 cut(s) | 298, 326, 635, 677 |
| EarI | CTCTTC | 4 cut(s) | 298, 326, 635, 677 |
| EciI | GGCGGA | 1 cut(s) | 301 |
| Ecl136II | GAGCTC | 4 cut(s) | 23, 80, 171, 670 |
| Eco24I | GRGCYC | 4 cut(s) | 25, 82, 173, 672 |
| Eco31I | GGTCTC | 1 cut(s) | 400 |
| Eco47I | GGWCC | 1 cut(s) | 234 |
| Eco53kI | GAGCTC | 4 cut(s) | 23, 80, 171, 670 |
| Eco57I | CTGAAG | 2 cut(s) | 543, 765 |
| EcoICRI | GAGCTC | 4 cut(s) | 23, 80, 171, 670 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1070 |
| EcoRII | CCWGG | 1 cut(s) | 119 |
| EcoT38I | GRGCYC | 4 cut(s) | 25, 82, 173, 672 |
| Esp3I | CGTCTC | 2 cut(s) | 584, 716 |
| FaeI | CATG | 4 cut(s) | 572, 1014, 1046, 1121 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 10, 42 |
| FaqI | GGGAC | 1 cut(s) | 1053 |
| FatI | CATG | 4 cut(s) | 568, 1010, 1042, 1117 |
| FbaI | TGATCA | 1 cut(s) | 852 |
| FblI | GTMKAC | 1 cut(s) | 657 |
| Fnu4HI | GCNGC | 3 cut(s) | 47, 182, 421 |
| FokI | GGATG | 2 cut(s) | 47, 588 |
| FriOI | GRGCYC | 4 cut(s) | 25, 82, 173, 672 |
| FseI | GGCCGGCC | 1 cut(s) | 9 |
| Fsp4HI | GCNGC | 3 cut(s) | 47, 182, 421 |
| FspBI | CTAG | 2 cut(s) | 794, 1110 |
| GlaI | GCGC | 1 cut(s) | 1088 |
| GluI | GCNGC | 3 cut(s) | 47, 182, 421 |
| GsuI | CTGGAG | 1 cut(s) | 833 |
| HaeIII | GGCC | 8 cut(s) | 5, 9, 46, 146, 913, 1062, 1071, 1107 |
| HapII | CCGG | 4 cut(s) | 6, 237, 429, 598 |
| HhaI | GCGC | 1 cut(s) | 1089 |
| Hin1II | CATG | 4 cut(s) | 572, 1014, 1046, 1121 |
| Hin6I | GCGC | 1 cut(s) | 1087 |
| HinP1I | GCGC | 1 cut(s) | 1087 |
| HincII | GTYRAC | 1 cut(s) | 658 |
| HindII | GTYRAC | 1 cut(s) | 658 |
| HinfI | GANTC | 5 cut(s) | 163, 208, 252, 258, 831 |
| HpaII | CCGG | 4 cut(s) | 6, 237, 429, 598 |
| HphI | GGTGA | 2 cut(s) | 331, 542 |
| Hpy166II | GTNNAC | 1 cut(s) | 658 |
| Hpy188I | TCNGA | 8 cut(s) | 77, 107, 168, 175, 257, 403, 638, 937 |
| Hpy188III | TCNNGA | 4 cut(s) | 429, 508, 569, 754 |
| Hpy8I | GTNNAC | 1 cut(s) | 658 |
| Hpy99I | CGWCG | 1 cut(s) | 91 |
| HpyAV | CCTTC | 6 cut(s) | 36, 319, 337, 653, 671, 1061 |
| HpyCH4III | ACNGT | 1 cut(s) | 655 |
| HpyCH4IV | ACGT | 5 cut(s) | 577, 709, 858, 994, 1030 |
| HpyCH4V | TGCA | 4 cut(s) | 865, 980, 1025, 1132 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 1068 |
| HpyF3I | CTNAG | 7 cut(s) | 167, 191, 402, 458, 666, 936, 1143 |
| HpySE526I | ACGT | 5 cut(s) | 577, 709, 858, 994, 1030 |
| Hsp92II | CATG | 4 cut(s) | 572, 1014, 1046, 1121 |
| HspAI | GCGC | 1 cut(s) | 1087 |
| Kpn2I | TCCGGA | 1 cut(s) | 428 |
| KroI | GCCGGC | 2 cut(s) | 5, 597 |
| KroNI | GCCGGC | 2 cut(s) | 7, 599 |
| Ksp22I | TGATCA | 1 cut(s) | 852 |
| Kzo9I | GATC | 5 cut(s) | 102, 107, 128, 852, 1000 |
| LguI | GCTCTTC | 1 cut(s) | 677 |
| LmnI | GCTCC | 4 cut(s) | 28, 77, 176, 189 |
| Lsp1109I | GCAGC | 1 cut(s) | 168 |
| LweI | GCATC | 2 cut(s) | 432, 610 |
| MaeI | CTAG | 2 cut(s) | 794, 1110 |
| MaeII | ACGT | 5 cut(s) | 577, 709, 858, 994, 1030 |
| MaeIII | GTNAC | 2 cut(s) | 406, 461 |
| MalI | GATC | 5 cut(s) | 104, 109, 130, 854, 1002 |
| MboI | GATC | 5 cut(s) | 102, 107, 128, 852, 1000 |
| MhlI | GDGCHC | 4 cut(s) | 25, 82, 173, 672 |
| MluCI | AATT | 8 cut(s) | 474, 486, 511, 607, 715, 930, 943, 1177 |
| MlyI | GAGTC | 1 cut(s) | 202 |
| MmeI | TCCRAC | 5 cut(s) | 212, 227, 280, 317, 970 |
| MroI | TCCGGA | 1 cut(s) | 428 |
| MroNI | GCCGGC | 2 cut(s) | 5, 597 |
| MseI | TTAA | 2 cut(s) | 12, 1180 |
| MspA1I | CMGCKG | 1 cut(s) | 420 |
| MspCI | CTTAAG | 1 cut(s) | 11 |
| MspI | CCGG | 4 cut(s) | 6, 237, 429, 598 |
| MspR9I | CCNGG | 1 cut(s) | 121 |
| MvaI | CCWGG | 1 cut(s) | 121 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 1068 |
| NaeI | GCCGGC | 2 cut(s) | 7, 599 |
| NdeII | GATC | 5 cut(s) | 102, 107, 128, 852, 1000 |
| NgoMIV | GCCGGC | 2 cut(s) | 5, 597 |
| NlaIII | CATG | 4 cut(s) | 572, 1014, 1046, 1121 |
| NlaIV | GGNNCC | 1 cut(s) | 1140 |
| NmuCI | GTSAC | 1 cut(s) | 461 |
| NspV | TTCGAA | 2 cut(s) | 161, 675 |
| PagI | TCATGA | 1 cut(s) | 568 |
| PciSI | GCTCTTC | 1 cut(s) | 677 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 209 |
| PdiI | GCCGGC | 2 cut(s) | 7, 599 |
| PfeI | GAWTC | 4 cut(s) | 163, 252, 258, 831 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1083 |
| PkrI | GCNGC | 3 cut(s) | 48, 183, 422 |
| PleI | GAGTC | 1 cut(s) | 202 |
| PpsI | GAGTC | 1 cut(s) | 202 |
| Ppu21I | YACGTR | 1 cut(s) | 1031 |
| Psp124BI | GAGCTC | 4 cut(s) | 25, 82, 173, 672 |
| Psp6I | CCWGG | 1 cut(s) | 119 |
| PspGI | CCWGG | 1 cut(s) | 119 |
| PspN4I | GGNNCC | 1 cut(s) | 1140 |
| PspPI | GGNCC | 5 cut(s) | 234, 912, 1060, 1070, 1106 |
| RigI | GGCCGGCC | 1 cut(s) | 9 |
| RsaI | GTAC | 1 cut(s) | 861 |
| RsaNI | GTAC | 1 cut(s) | 860 |
| SacI | GAGCTC | 4 cut(s) | 25, 82, 173, 672 |
| SalI | GTCGAC | 1 cut(s) | 656 |
| SapI | GCTCTTC | 1 cut(s) | 677 |
| SaqAI | TTAA | 2 cut(s) | 12, 1180 |
| SatI | GCNGC | 3 cut(s) | 47, 182, 421 |
| Sau3AI | GATC | 5 cut(s) | 102, 107, 128, 852, 1000 |
| Sau96I | GGNCC | 5 cut(s) | 234, 912, 1060, 1070, 1106 |
| SchI | GAGTC | 1 cut(s) | 202 |
| ScrFI | CCNGG | 1 cut(s) | 121 |
| SduI | GDGCHC | 4 cut(s) | 25, 82, 173, 672 |
| SfaNI | GCATC | 2 cut(s) | 432, 610 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 1068 |
| SfuI | TTCGAA | 2 cut(s) | 161, 675 |
| SinI | GGWCC | 1 cut(s) | 234 |
| SmlI | CTYRAG | 1 cut(s) | 11 |
| SmoI | CTYRAG | 1 cut(s) | 11 |
| Sse9I | AATT | 8 cut(s) | 474, 486, 511, 607, 715, 930, 943, 1177 |
| SsiI | CCGC | 3 cut(s) | 47, 286, 420 |
| SspMI | CTAG | 2 cut(s) | 794, 1110 |
| SstI | GAGCTC | 4 cut(s) | 25, 82, 173, 672 |
| StyD4I | CCNGG | 1 cut(s) | 119 |
| TaaI | ACNGT | 1 cut(s) | 655 |
| TaiI | ACGT | 5 cut(s) | 580, 712, 861, 997, 1033 |
| TaqI | TCGA | 5 cut(s) | 149, 161, 442, 657, 675 |
| TaqII | GACCGA | 1 cut(s) | 554 |
| TasI | AATT | 8 cut(s) | 474, 486, 511, 607, 715, 930, 943, 1177 |
| TauI | GCSGC | 2 cut(s) | 49, 423 |
| TfiI | GAWTC | 4 cut(s) | 163, 252, 258, 831 |
| Tru1I | TTAA | 2 cut(s) | 12, 1180 |
| Tru9I | TTAA | 2 cut(s) | 12, 1180 |
| TscAI | CASTG | 1 cut(s) | 658 |
| TseFI | GTSAC | 1 cut(s) | 461 |
| TseI | GCWGC | 1 cut(s) | 181 |
| Tsp45I | GTSAC | 1 cut(s) | 461 |
| TspDTI | ATGAA | 2 cut(s) | 266, 622 |
| TspGWI | ACGGA | 1 cut(s) | 201 |
| TspRI | CASTG | 1 cut(s) | 658 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1083 |
| Vha464I | CTTAAG | 1 cut(s) | 11 |
| VpaK11BI | GGWCC | 1 cut(s) | 234 |
| XapI | RAATTY | 2 cut(s) | 511, 930 |
| XmiI | GTMKAC | 1 cut(s) | 657 |
| XspI | CTAG | 2 cut(s) | 794, 1110 |