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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 600 |
| Acc16I | TGCGCA | 1 cut(s) | 431 |
| Acc36I | ACCTGC | 1 cut(s) | 600 |
| AccII | CGCG | 3 cut(s) | 29, 416, 493 |
| AciI | CCGC | 6 cut(s) | 29, 402, 416, 449, 496, 505 |
| AclWI | GGATC | 9 cut(s) | 59, 145, 271, 373, 386, 505, 518, 758, 974 |
| AcuI | CTGAAG | 2 cut(s) | 773, 989 |
| AfaI | GTAC | 1 cut(s) | 620 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 314, 315, 628, 778, 994 |
| AflII | CTTAAG | 2 cut(s) | 824, 1040 |
| AgsI | TTSAA | 1 cut(s) | 255 |
| AluBI | AGCT | 3 cut(s) | 157, 321, 605 |
| AluI | AGCT | 3 cut(s) | 157, 321, 605 |
| Alw21I | GWGCWC | 1 cut(s) | 463 |
| Alw26I | GTCTC | 2 cut(s) | 202, 657 |
| AlwI | GGATC | 9 cut(s) | 59, 145, 271, 373, 386, 505, 518, 758, 974 |
| Ama87I | CYCGRG | 3 cut(s) | 8, 41, 291 |
| AoxI | GGCC | 1 cut(s) | 248 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 786, 1002 |
| AspLEI | GCGC | 6 cut(s) | 19, 416, 432, 493, 495, 539 |
| AspS9I | GGNCC | 2 cut(s) | 710, 926 |
| AsuC2I | CCSGG | 1 cut(s) | 239 |
| AsuHPI | GGTGA | 2 cut(s) | 736, 952 |
| AvaI | CYCGRG | 3 cut(s) | 8, 41, 291 |
| AvaII | GGWCC | 2 cut(s) | 710, 926 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 602, 635 |
| BamHI | GGATCC | 2 cut(s) | 378, 510 |
| BbsI | GAAGAC | 1 cut(s) | 240 |
| Bbv12I | GWGCWC | 1 cut(s) | 463 |
| BccI | CCATC | 5 cut(s) | 78, 308, 479, 686, 701 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 337, 352, 371, 386, 454, 488 |
| BcnI | CCSGG | 1 cut(s) | 239 |
| BcoDI | GTCTC | 2 cut(s) | 202, 657 |
| BfaI | CTAG | 5 cut(s) | 20, 114, 602, 768, 984 |
| BfmI | CTRYAG | 2 cut(s) | 394, 570 |
| BfoI | RGCGCY | 1 cut(s) | 540 |
| BfrI | CTTAAG | 2 cut(s) | 824, 1040 |
| BfuAI | ACCTGC | 1 cut(s) | 600 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 656, 881 |
| BlpI | GCTNAGC | 1 cut(s) | 596 |
| Bme1390I | CCNGG | 1 cut(s) | 239 |
| Bme18I | GGWCC | 2 cut(s) | 710, 926 |
| BmeT110I | CYCGRG | 3 cut(s) | 8, 41, 291 |
| BmgT120I | GGNCC | 2 cut(s) | 710, 926 |
| BmiI | GGNNCC | 3 cut(s) | 380, 420, 512 |
| BmrFI | CCNGG | 1 cut(s) | 239 |
| BmsI | GCATC | 1 cut(s) | 254 |
| BpiI | GAAGAC | 1 cut(s) | 240 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 310, 342 |
| Bpu10I | CCTNAGC | 1 cut(s) | 374 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 596 |
| BpuEI | CTTGAG | 2 cut(s) | 158, 635 |
| BpuMI | CCSGG | 1 cut(s) | 239 |
| Bsa29I | ATCGAT | 1 cut(s) | 73 |
| BsaI | GGTCTC | 1 cut(s) | 202 |
| BsaJI | CCNNGG | 1 cut(s) | 292 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 314, 315, 628, 778, 994 |
| Bse1I | ACTGG | 1 cut(s) | 335 |
| BseCI | ATCGAT | 1 cut(s) | 73 |
| BseDI | CCNNGG | 1 cut(s) | 292 |
| BseGI | GGATG | 3 cut(s) | 173, 823, 1039 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 314, 315, 628, 778, 994 |
| BseMII | CTCAG | 2 cut(s) | 555, 610 |
| BseNI | ACTGG | 1 cut(s) | 335 |
| BsePI | GCGCGC | 1 cut(s) | 491 |
| BseRI | GAGGAG | 3 cut(s) | 61, 157, 411 |
| BseYI | CCCAGC | 3 cut(s) | 487, 777, 993 |
| BsgI | GTGCAG | 1 cut(s) | 265 |
| Bsh1236I | CGCG | 3 cut(s) | 29, 416, 493 |
| BshFI | GGCC | 1 cut(s) | 250 |
| BshVI | ATCGAT | 1 cut(s) | 73 |
| BsiHKAI | GWGCWC | 1 cut(s) | 463 |
| BsiHKCI | CYCGRG | 3 cut(s) | 8, 41, 291 |
| BsiSI | CCGG | 2 cut(s) | 238, 508 |
| BslFI | GGGAC | 2 cut(s) | 843, 1059 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 314, 315, 628, 778, 994 |
| BsmAI | GTCTC | 2 cut(s) | 202, 657 |
| BsmFI | GGGAC | 2 cut(s) | 843, 1059 |
| BsnI | GGCC | 1 cut(s) | 250 |
| Bso31I | GGTCTC | 1 cut(s) | 202 |
| BsoBI | CYCGRG | 3 cut(s) | 8, 41, 291 |
| Bsp1286I | GDGCHC | 1 cut(s) | 463 |
| Bsp143I | GATC | 7 cut(s) | 51, 150, 276, 378, 510, 763, 979 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 596 |
| BspACI | CCGC | 6 cut(s) | 29, 402, 416, 449, 496, 505 |
| BspANI | GGCC | 1 cut(s) | 250 |
| BspCNI | CTCAG | 2 cut(s) | 554, 609 |
| BspDI | ATCGAT | 1 cut(s) | 73 |
| BspFNI | CGCG | 3 cut(s) | 29, 416, 493 |
| BspHI | TCATGA | 1 cut(s) | 1063 |
| BspLI | GGNNCC | 3 cut(s) | 380, 420, 512 |
| BspMAI | CTGCAG | 2 cut(s) | 398, 574 |
| BspMI | ACCTGC | 1 cut(s) | 600 |
| BspPI | GGATC | 9 cut(s) | 59, 145, 271, 373, 386, 505, 518, 758, 974 |
| BspTI | CTTAAG | 2 cut(s) | 824, 1040 |
| BspTNI | GGTCTC | 1 cut(s) | 202 |
| BsrI | ACTGG | 1 cut(s) | 335 |
| BssECI | CCNNGG | 1 cut(s) | 292 |
| BssHII | GCGCGC | 1 cut(s) | 491 |
| BssMI | GATC | 7 cut(s) | 51, 150, 276, 378, 510, 763, 979 |
| Bst4CI | ACNGT | 7 cut(s) | 626, 714, 813, 851, 930, 1029, 1090 |
| BstAFI | CTTAAG | 2 cut(s) | 824, 1040 |
| BstC8I | GCNNGC | 5 cut(s) | 90, 248, 463, 467, 493 |
| BstDEI | CTNAG | 4 cut(s) | 269, 374, 541, 596 |
| BstF5I | GGATG | 3 cut(s) | 173, 823, 1039 |
| BstFNI | CGCG | 3 cut(s) | 29, 416, 493 |
| BstH2I | RGCGCY | 1 cut(s) | 540 |
| BstHHI | GCGC | 6 cut(s) | 19, 416, 432, 493, 495, 539 |
| BstKTI | GATC | 7 cut(s) | 54, 153, 279, 381, 513, 766, 982 |
| BstMAI | GTCTC | 2 cut(s) | 202, 657 |
| BstMBI | GATC | 7 cut(s) | 51, 150, 276, 378, 510, 763, 979 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 187, 504, 562, 578, 581, 656, 881 |
| BstSCI | CCNGG | 1 cut(s) | 237 |
| BstSFI | CTRYAG | 2 cut(s) | 394, 570 |
| BstUI | CGCG | 3 cut(s) | 29, 416, 493 |
| BstV2I | GAAGAC | 1 cut(s) | 240 |
| BstX2I | RGATCY | 3 cut(s) | 276, 378, 510 |
| BstYI | RGATCY | 3 cut(s) | 276, 378, 510 |
| Bsu15I | ATCGAT | 1 cut(s) | 73 |
| BsuRI | GGCC | 1 cut(s) | 250 |
| BsuTUI | ATCGAT | 1 cut(s) | 73 |
| BtgZI | GCGATG | 1 cut(s) | 457 |
| BtsCI | GGATG | 3 cut(s) | 173, 823, 1039 |
| BtsI | GCAGTG | 1 cut(s) | 894 |
| BtsIMutI | CAGTG | 4 cut(s) | 328, 690, 847, 894 |
| BveI | ACCTGC | 1 cut(s) | 600 |
| Cac8I | GCNNGC | 5 cut(s) | 90, 248, 463, 467, 493 |
| CciI | TCATGA | 1 cut(s) | 1063 |
| CfoI | GCGC | 6 cut(s) | 19, 416, 432, 493, 495, 539 |
| Cfr13I | GGNCC | 2 cut(s) | 710, 926 |
| ClaI | ATCGAT | 1 cut(s) | 73 |
| Csp6I | GTAC | 1 cut(s) | 619 |
| CviAII | CATG | 1 cut(s) | 1064 |
| CviQI | GTAC | 1 cut(s) | 619 |
| DdeI | CTNAG | 4 cut(s) | 269, 374, 541, 596 |
| DpnI | GATC | 7 cut(s) | 53, 152, 278, 380, 512, 765, 981 |
| DpnII | GATC | 7 cut(s) | 51, 150, 276, 378, 510, 763, 979 |
| Eco147I | AGGCCT | 1 cut(s) | 250 |
| Eco31I | GGTCTC | 1 cut(s) | 202 |
| Eco32I | GATATC | 1 cut(s) | 285 |
| Eco47I | GGWCC | 2 cut(s) | 710, 926 |
| Eco57I | CTGAAG | 2 cut(s) | 773, 989 |
| Eco88I | CYCGRG | 3 cut(s) | 8, 41, 291 |
| EcoRV | GATATC | 1 cut(s) | 285 |
| FaeI | CATG | 1 cut(s) | 1067 |
| FaiI | YATR | 4 cut(s) | 336, 759, 975, 1065 |
| FaqI | GGGAC | 2 cut(s) | 843, 1059 |
| FatI | CATG | 1 cut(s) | 1063 |
| FauI | CCCGC | 3 cut(s) | 22, 409, 456 |
| FokI | GGATG | 3 cut(s) | 180, 830, 1046 |
| FspBI | CTAG | 5 cut(s) | 20, 114, 602, 768, 984 |
| FspI | TGCGCA | 1 cut(s) | 431 |
| GlaI | GCGC | 6 cut(s) | 18, 415, 431, 492, 494, 538 |
| GsaI | CCCAGC | 3 cut(s) | 491, 781, 997 |
| HaeII | RGCGCY | 1 cut(s) | 540 |
| HaeIII | GGCC | 1 cut(s) | 250 |
| HapII | CCGG | 2 cut(s) | 238, 508 |
| HhaI | GCGC | 6 cut(s) | 19, 416, 432, 493, 495, 539 |
| Hin1II | CATG | 1 cut(s) | 1067 |
| Hin6I | GCGC | 6 cut(s) | 17, 414, 430, 491, 493, 537 |
| HinP1I | GCGC | 6 cut(s) | 17, 414, 430, 491, 493, 537 |
| HinfI | GANTC | 2 cut(s) | 106, 349 |
| HpaII | CCGG | 2 cut(s) | 238, 508 |
| HphI | GGTGA | 2 cut(s) | 736, 952 |
| Hpy188III | TCNNGA | 6 cut(s) | 10, 43, 114, 137, 280, 1064 |
| HpyAV | CCTTC | 4 cut(s) | 215, 261, 797, 1013 |
| HpyCH4III | ACNGT | 7 cut(s) | 626, 714, 813, 851, 930, 1029, 1090 |
| HpyCH4IV | ACGT | 2 cut(s) | 832, 1048 |
| HpyCH4V | TGCA | 6 cut(s) | 210, 246, 396, 531, 550, 572 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 187, 504, 562, 578, 581, 656, 881 |
| HpyF3I | CTNAG | 4 cut(s) | 269, 374, 541, 596 |
| HpySE526I | ACGT | 2 cut(s) | 832, 1048 |
| Hsp92II | CATG | 1 cut(s) | 1067 |
| HspAI | GCGC | 6 cut(s) | 17, 414, 430, 491, 493, 537 |
| Kzo9I | GATC | 7 cut(s) | 51, 150, 276, 378, 510, 763, 979 |
| LmnI | GCTCC | 3 cut(s) | 318, 424, 1080 |
| LweI | GCATC | 1 cut(s) | 254 |
| MaeI | CTAG | 5 cut(s) | 20, 114, 602, 768, 984 |
| MaeII | ACGT | 2 cut(s) | 832, 1048 |
| MalI | GATC | 7 cut(s) | 53, 152, 278, 380, 512, 765, 981 |
| MboI | GATC | 7 cut(s) | 51, 150, 276, 378, 510, 763, 979 |
| MboII | GAAGA | 1 cut(s) | 245 |
| MflI | RGATCY | 3 cut(s) | 276, 378, 510 |
| MhlI | GDGCHC | 1 cut(s) | 463 |
| MlyI | GAGTC | 2 cut(s) | 115, 358 |
| MmeI | TCCRAC | 1 cut(s) | 507 |
| MroXI | GAANNNNTTC | 2 cut(s) | 786, 1002 |
| MseI | TTAA | 6 cut(s) | 740, 794, 825, 956, 1010, 1041 |
| MslI | CAYNNNNRTG | 2 cut(s) | 75, 262 |
| MspA1I | CMGCKG | 1 cut(s) | 157 |
| MspCI | CTTAAG | 2 cut(s) | 824, 1040 |
| MspI | CCGG | 2 cut(s) | 238, 508 |
| MspR9I | CCNGG | 1 cut(s) | 239 |
| MvnI | CGCG | 3 cut(s) | 29, 416, 493 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 187, 504, 562, 578, 581, 656, 881 |
| NciI | CCSGG | 1 cut(s) | 239 |
| NdeII | GATC | 7 cut(s) | 51, 150, 276, 378, 510, 763, 979 |
| NlaIII | CATG | 1 cut(s) | 1067 |
| NlaIV | GGNNCC | 3 cut(s) | 380, 420, 512 |
| NsbI | TGCGCA | 1 cut(s) | 431 |
| PaeR7I | CTCGAG | 2 cut(s) | 8, 41 |
| PagI | TCATGA | 1 cut(s) | 1063 |
| PaqCI | CACCTGC | 1 cut(s) | 600 |
| PauI | GCGCGC | 1 cut(s) | 491 |
| PceI | AGGCCT | 1 cut(s) | 250 |
| PdmI | GAANNNNTTC | 2 cut(s) | 786, 1002 |
| PleI | GAGTC | 2 cut(s) | 114, 357 |
| PpsI | GAGTC | 2 cut(s) | 114, 357 |
| PspFI | CCCAGC | 3 cut(s) | 487, 777, 993 |
| PspN4I | GGNNCC | 3 cut(s) | 380, 420, 512 |
| PspPI | GGNCC | 2 cut(s) | 710, 926 |
| PstI | CTGCAG | 2 cut(s) | 398, 574 |
| PsuI | RGATCY | 3 cut(s) | 276, 378, 510 |
| PteI | GCGCGC | 1 cut(s) | 491 |
| PvuII | CAGCTG | 1 cut(s) | 157 |
| RsaI | GTAC | 1 cut(s) | 620 |
| RsaNI | GTAC | 1 cut(s) | 619 |
| RseI | CAYNNNNRTG | 2 cut(s) | 75, 262 |
| SaqAI | TTAA | 6 cut(s) | 740, 794, 825, 956, 1010, 1041 |
| Sau3AI | GATC | 7 cut(s) | 51, 150, 276, 378, 510, 763, 979 |
| Sau96I | GGNCC | 2 cut(s) | 710, 926 |
| SchI | GAGTC | 2 cut(s) | 115, 358 |
| ScrFI | CCNGG | 1 cut(s) | 239 |
| SduI | GDGCHC | 1 cut(s) | 463 |
| SfaNI | GCATC | 1 cut(s) | 254 |
| SfcI | CTRYAG | 2 cut(s) | 394, 570 |
| Sfr274I | CTCGAG | 2 cut(s) | 8, 41 |
| SinI | GGWCC | 2 cut(s) | 710, 926 |
| SlaI | CTCGAG | 2 cut(s) | 8, 41 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 75, 262 |
| SmlI | CTYRAG | 6 cut(s) | 8, 41, 137, 614, 824, 1040 |
| SmoI | CTYRAG | 6 cut(s) | 8, 41, 137, 614, 824, 1040 |
| SseBI | AGGCCT | 1 cut(s) | 250 |
| SsiI | CCGC | 6 cut(s) | 29, 402, 416, 449, 496, 505 |
| SspMI | CTAG | 5 cut(s) | 20, 114, 602, 768, 984 |
| StuI | AGGCCT | 1 cut(s) | 250 |
| StyD4I | CCNGG | 1 cut(s) | 237 |
| TaaI | ACNGT | 7 cut(s) | 626, 714, 813, 851, 930, 1029, 1090 |
| TaiI | ACGT | 2 cut(s) | 835, 1051 |
| TaqI | TCGA | 3 cut(s) | 9, 42, 73 |
| TaqII | GACCGA | 2 cut(s) | 164, 184 |
| TauI | GCSGC | 2 cut(s) | 419, 498 |
| Tru1I | TTAA | 6 cut(s) | 740, 794, 825, 956, 1010, 1041 |
| Tru9I | TTAA | 6 cut(s) | 740, 794, 825, 956, 1010, 1041 |
| TscAI | CASTG | 4 cut(s) | 335, 697, 854, 901 |
| TspDTI | ATGAA | 2 cut(s) | 234, 1052 |
| TspRI | CASTG | 4 cut(s) | 335, 697, 854, 901 |
| Vha464I | CTTAAG | 2 cut(s) | 824, 1040 |
| VpaK11BI | GGWCC | 2 cut(s) | 710, 926 |
| XbaI | TCTAGA | 1 cut(s) | 113 |
| XhoI | CTCGAG | 2 cut(s) | 8, 41 |
| XmnI | GAANNNNTTC | 2 cut(s) | 786, 1002 |
| XspI | CTAG | 5 cut(s) | 20, 114, 602, 768, 984 |