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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 2 cut(s) | 281, 365 |
| AccB1I | GGYRCC | 1 cut(s) | 362 |
| AccII | CGCG | 3 cut(s) | 79, 113, 140 |
| AciI | CCGC | 8 cut(s) | 53, 77, 113, 140, 143, 174, 360, 709 |
| AclI | AACGTT | 1 cut(s) | 649 |
| AclWI | GGATC | 3 cut(s) | 58, 461, 575 |
| AcoI | YGGCCR | 1 cut(s) | 114 |
| AfaI | GTAC | 1 cut(s) | 515 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 123, 523, 685 |
| AflIII | ACRYGT | 1 cut(s) | 724 |
| AgsI | TTSAA | 2 cut(s) | 613, 716 |
| AjnI | CCWGG | 1 cut(s) | 679 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 675, 707 |
| Alw26I | GTCTC | 1 cut(s) | 750 |
| AlwI | GGATC | 3 cut(s) | 58, 461, 575 |
| Ama87I | CYCGRG | 1 cut(s) | 218 |
| AoxI | GGCC | 5 cut(s) | 114, 125, 144, 160, 203 |
| ApeKI | GCWGC | 3 cut(s) | 11, 438, 441 |
| AspLEI | GCGC | 1 cut(s) | 733 |
| AspS9I | GGNCC | 1 cut(s) | 243 |
| AsuC2I | CCSGG | 2 cut(s) | 124, 182 |
| AsuNHI | GCTAGC | 1 cut(s) | 44 |
| AvaI | CYCGRG | 1 cut(s) | 218 |
| AvaII | GGWCC | 1 cut(s) | 243 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 497, 530 |
| BanI | GGYRCC | 1 cut(s) | 362 |
| BbsI | GAAGAC | 1 cut(s) | 620 |
| BbvCI | CCTCAGC | 4 cut(s) | 102, 129, 164, 307 |
| BbvI | GCAGC | 3 cut(s) | 23, 450, 453 |
| BccI | CCATC | 3 cut(s) | 206, 396, 525 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 279, 313 |
| BciT130I | CCWGG | 1 cut(s) | 681 |
| BcnI | CCSGG | 2 cut(s) | 124, 182 |
| BcoDI | GTCTC | 1 cut(s) | 750 |
| BfaI | CTAG | 1 cut(s) | 45 |
| BfmI | CTRYAG | 1 cut(s) | 6 |
| BfuAI | ACCTGC | 2 cut(s) | 281, 365 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 551 |
| BisI | GCNGC | 8 cut(s) | 12, 114, 141, 144, 174, 361, 439, 442 |
| BlsI | GCNGC | 8 cut(s) | 13, 115, 142, 145, 175, 362, 440, 443 |
| Bme1390I | CCNGG | 3 cut(s) | 124, 182, 681 |
| Bme18I | GGWCC | 1 cut(s) | 243 |
| BmeT110I | CYCGRG | 1 cut(s) | 218 |
| BmgT120I | GGNCC | 1 cut(s) | 243 |
| BmiI | GGNNCC | 2 cut(s) | 245, 364 |
| BmrFI | CCNGG | 3 cut(s) | 124, 182, 681 |
| BmsI | GCATC | 3 cut(s) | 57, 425, 625 |
| BmtI | GCTAGC | 1 cut(s) | 48 |
| BpiI | GAAGAC | 1 cut(s) | 620 |
| Bpu10I | CCTNAGC | 4 cut(s) | 102, 129, 164, 307 |
| BpuEI | CTTGAG | 1 cut(s) | 530 |
| BpuMI | CCSGG | 2 cut(s) | 124, 182 |
| BsaJI | CCNNGG | 2 cut(s) | 450, 679 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 395, 425 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 123, 523, 685 |
| Bse118I | RCCGGY | 1 cut(s) | 158 |
| Bse1I | ACTGG | 1 cut(s) | 690 |
| BseBI | CCWGG | 1 cut(s) | 681 |
| BseDI | CCNNGG | 2 cut(s) | 450, 679 |
| BseGI | GGATG | 3 cut(s) | 48, 209, 640 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 123, 523, 685 |
| BseMII | CTCAG | 6 cut(s) | 116, 143, 178, 321, 471, 513 |
| BseNI | ACTGG | 1 cut(s) | 690 |
| BseXI | GCAGC | 3 cut(s) | 23, 450, 453 |
| BseYI | CCCAGC | 1 cut(s) | 19 |
| BsgI | GTGCAG | 1 cut(s) | 304 |
| Bsh1236I | CGCG | 3 cut(s) | 79, 113, 140 |
| BshFI | GGCC | 5 cut(s) | 116, 127, 146, 162, 205 |
| BshNI | GGYRCC | 1 cut(s) | 362 |
| BsiHKCI | CYCGRG | 1 cut(s) | 218 |
| BsiSI | CCGG | 3 cut(s) | 124, 159, 182 |
| BslFI | GGGAC | 2 cut(s) | 66, 229 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 123, 523, 685 |
| BsmAI | GTCTC | 1 cut(s) | 750 |
| BsmFI | GGGAC | 2 cut(s) | 66, 229 |
| BsnI | GGCC | 5 cut(s) | 116, 127, 146, 162, 205 |
| BsoBI | CYCGRG | 1 cut(s) | 218 |
| Bsp143I | GATC | 5 cut(s) | 63, 315, 424, 466, 580 |
| BspACI | CCGC | 8 cut(s) | 53, 77, 113, 140, 143, 174, 360, 709 |
| BspANI | GGCC | 5 cut(s) | 116, 127, 146, 162, 205 |
| BspCNI | CTCAG | 6 cut(s) | 115, 142, 177, 320, 472, 512 |
| BspFNI | CGCG | 3 cut(s) | 79, 113, 140 |
| BspHI | TCATGA | 1 cut(s) | 664 |
| BspLI | GGNNCC | 2 cut(s) | 245, 364 |
| BspMI | ACCTGC | 2 cut(s) | 281, 365 |
| BspOI | GCTAGC | 1 cut(s) | 48 |
| BspPI | GGATC | 3 cut(s) | 58, 461, 575 |
| BspT107I | GGYRCC | 1 cut(s) | 362 |
| BsrFI | RCCGGY | 1 cut(s) | 158 |
| BsrI | ACTGG | 1 cut(s) | 690 |
| BssAI | RCCGGY | 1 cut(s) | 158 |
| BssECI | CCNNGG | 2 cut(s) | 450, 679 |
| BssMI | GATC | 5 cut(s) | 63, 315, 424, 466, 580 |
| BssT1I | CCWWGG | 1 cut(s) | 450 |
| Bst2UI | CCWGG | 1 cut(s) | 681 |
| Bst4CI | ACNGT | 1 cut(s) | 630 |
| BstC8I | GCNNGC | 6 cut(s) | 33, 46, 57, 178, 323, 351 |
| BstDEI | CTNAG | 6 cut(s) | 102, 129, 164, 307, 480, 499 |
| BstF5I | GGATG | 3 cut(s) | 48, 209, 640 |
| BstFNI | CGCG | 3 cut(s) | 79, 113, 140 |
| BstHHI | GCGC | 1 cut(s) | 733 |
| BstKTI | GATC | 5 cut(s) | 66, 318, 427, 469, 583 |
| BstMAI | GTCTC | 1 cut(s) | 750 |
| BstMBI | GATC | 5 cut(s) | 63, 315, 424, 466, 580 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 20, 41, 119, 308, 435, 551 |
| BstNI | CCWGG | 1 cut(s) | 681 |
| BstNSI | RCATGY | 1 cut(s) | 728 |
| BstSCI | CCNGG | 3 cut(s) | 122, 180, 679 |
| BstSFI | CTRYAG | 1 cut(s) | 6 |
| BstUI | CGCG | 3 cut(s) | 79, 113, 140 |
| BstV1I | GCAGC | 3 cut(s) | 23, 450, 453 |
| BstV2I | GAAGAC | 1 cut(s) | 620 |
| BstX2I | RGATCY | 1 cut(s) | 63 |
| BstYI | RGATCY | 1 cut(s) | 63 |
| BsuRI | GGCC | 5 cut(s) | 116, 127, 146, 162, 205 |
| BtsCI | GGATG | 3 cut(s) | 48, 209, 640 |
| BtsI | GCAGTG | 2 cut(s) | 444, 564 |
| BtsIMutI | CAGTG | 3 cut(s) | 444, 564, 701 |
| BveI | ACCTGC | 2 cut(s) | 281, 365 |
| Cac8I | GCNNGC | 6 cut(s) | 33, 46, 57, 178, 323, 351 |
| CciI | TCATGA | 1 cut(s) | 664 |
| CfoI | GCGC | 1 cut(s) | 733 |
| Cfr10I | RCCGGY | 1 cut(s) | 158 |
| Cfr13I | GGNCC | 1 cut(s) | 243 |
| CseI | GACGC | 1 cut(s) | 68 |
| Csp6I | GTAC | 1 cut(s) | 514 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 737, 772 |
| CviAII | CATG | 2 cut(s) | 665, 725 |
| CviQI | GTAC | 1 cut(s) | 514 |
| DdeI | CTNAG | 6 cut(s) | 102, 129, 164, 307, 480, 499 |
| DpnI | GATC | 5 cut(s) | 65, 317, 426, 468, 582 |
| DpnII | GATC | 5 cut(s) | 63, 315, 424, 466, 580 |
| DraI | TTTAAA | 1 cut(s) | 643 |
| EaeI | YGGCCR | 1 cut(s) | 114 |
| Eco130I | CCWWGG | 1 cut(s) | 450 |
| Eco47I | GGWCC | 1 cut(s) | 243 |
| Eco88I | CYCGRG | 1 cut(s) | 218 |
| EcoRII | CCWGG | 1 cut(s) | 679 |
| EcoT14I | CCWWGG | 1 cut(s) | 450 |
| ErhI | CCWWGG | 1 cut(s) | 450 |
| FaeI | CATG | 2 cut(s) | 668, 728 |
| FaiI | YATR | 3 cut(s) | 536, 666, 726 |
| FaqI | GGGAC | 2 cut(s) | 66, 229 |
| FatI | CATG | 2 cut(s) | 664, 724 |
| FauI | CCCGC | 2 cut(s) | 60, 84 |
| Fnu4HI | GCNGC | 8 cut(s) | 12, 114, 141, 144, 174, 361, 439, 442 |
| FokI | GGATG | 3 cut(s) | 35, 196, 647 |
| Fsp4HI | GCNGC | 8 cut(s) | 12, 114, 141, 144, 174, 361, 439, 442 |
| FspBI | CTAG | 1 cut(s) | 45 |
| GlaI | GCGC | 1 cut(s) | 732 |
| GluI | GCNGC | 8 cut(s) | 12, 114, 141, 144, 174, 361, 439, 442 |
| GsaI | CCCAGC | 1 cut(s) | 23 |
| HaeIII | GGCC | 5 cut(s) | 116, 127, 146, 162, 205 |
| HapII | CCGG | 3 cut(s) | 124, 159, 182 |
| HgaI | GACGC | 1 cut(s) | 68 |
| HhaI | GCGC | 1 cut(s) | 733 |
| Hin1II | CATG | 2 cut(s) | 668, 728 |
| Hin6I | GCGC | 1 cut(s) | 731 |
| HinP1I | GCGC | 1 cut(s) | 731 |
| HincII | GTYRAC | 1 cut(s) | 400 |
| HindII | GTYRAC | 1 cut(s) | 400 |
| HinfI | GANTC | 3 cut(s) | 378, 497, 705 |
| HpaII | CCGG | 3 cut(s) | 124, 159, 182 |
| Hpy166II | GTNNAC | 1 cut(s) | 400 |
| Hpy188I | TCNGA | 4 cut(s) | 284, 338, 502, 532 |
| Hpy188III | TCNNGA | 2 cut(s) | 392, 665 |
| Hpy8I | GTNNAC | 1 cut(s) | 400 |
| Hpy99I | CGWCG | 2 cut(s) | 316, 398 |
| HpyAV | CCTTC | 2 cut(s) | 497, 754 |
| HpyCH4III | ACNGT | 1 cut(s) | 630 |
| HpyCH4IV | ACGT | 2 cut(s) | 396, 649 |
| HpyCH4V | TGCA | 4 cut(s) | 35, 321, 353, 438 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 20, 41, 119, 308, 435, 551 |
| HpyF3I | CTNAG | 6 cut(s) | 102, 129, 164, 307, 480, 499 |
| HpySE526I | ACGT | 2 cut(s) | 396, 649 |
| Hsp92II | CATG | 2 cut(s) | 668, 728 |
| HspAI | GCGC | 1 cut(s) | 731 |
| Kzo9I | GATC | 5 cut(s) | 63, 315, 424, 466, 580 |
| LmnI | GCTCC | 1 cut(s) | 681 |
| Lsp1109I | GCAGC | 3 cut(s) | 23, 450, 453 |
| LweI | GCATC | 3 cut(s) | 57, 425, 625 |
| MaeI | CTAG | 1 cut(s) | 45 |
| MaeII | ACGT | 2 cut(s) | 396, 649 |
| MalI | GATC | 5 cut(s) | 65, 317, 426, 468, 582 |
| MboI | GATC | 5 cut(s) | 63, 315, 424, 466, 580 |
| MboII | GAAGA | 2 cut(s) | 287, 625 |
| MfeI | CAATTG | 1 cut(s) | 261 |
| MflI | RGATCY | 1 cut(s) | 63 |
| MluCI | AATT | 2 cut(s) | 261, 749 |
| MlyI | GAGTC | 1 cut(s) | 491 |
| MmeI | TCCRAC | 3 cut(s) | 250, 307, 494 |
| MnlI | CCTC | 9 cut(s) | 26, 111, 138, 157, 173, 316, 421, 441, 448 |
| MseI | TTAA | 2 cut(s) | 642, 735 |
| MspI | CCGG | 3 cut(s) | 124, 159, 182 |
| MspR9I | CCNGG | 3 cut(s) | 124, 182, 681 |
| MunI | CAATTG | 1 cut(s) | 261 |
| MvaI | CCWGG | 1 cut(s) | 681 |
| MvnI | CGCG | 3 cut(s) | 79, 113, 140 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 20, 41, 119, 308, 435, 551 |
| NciI | CCSGG | 2 cut(s) | 124, 182 |
| NdeII | GATC | 5 cut(s) | 63, 315, 424, 466, 580 |
| NheI | GCTAGC | 1 cut(s) | 44 |
| NlaIII | CATG | 2 cut(s) | 668, 728 |
| NlaIV | GGNNCC | 2 cut(s) | 245, 364 |
| NspI | RCATGY | 1 cut(s) | 728 |
| PagI | TCATGA | 1 cut(s) | 664 |
| PciI | ACATGT | 1 cut(s) | 724 |
| PfeI | GAWTC | 2 cut(s) | 378, 705 |
| PkrI | GCNGC | 8 cut(s) | 13, 115, 142, 145, 175, 362, 440, 443 |
| PleI | GAGTC | 1 cut(s) | 491 |
| PpsI | GAGTC | 1 cut(s) | 491 |
| PscI | ACATGT | 1 cut(s) | 724 |
| Psp1406I | AACGTT | 1 cut(s) | 649 |
| Psp6I | CCWGG | 1 cut(s) | 679 |
| PspFI | CCCAGC | 1 cut(s) | 19 |
| PspGI | CCWGG | 1 cut(s) | 679 |
| PspN4I | GGNNCC | 2 cut(s) | 245, 364 |
| PspPI | GGNCC | 1 cut(s) | 243 |
| PsuI | RGATCY | 1 cut(s) | 63 |
| RsaI | GTAC | 1 cut(s) | 515 |
| RsaNI | GTAC | 1 cut(s) | 514 |
| SaqAI | TTAA | 2 cut(s) | 642, 735 |
| SatI | GCNGC | 8 cut(s) | 12, 114, 141, 144, 174, 361, 439, 442 |
| Sau3AI | GATC | 5 cut(s) | 63, 315, 424, 466, 580 |
| Sau96I | GGNCC | 1 cut(s) | 243 |
| SchI | GAGTC | 1 cut(s) | 491 |
| ScrFI | CCNGG | 3 cut(s) | 124, 182, 681 |
| SetI | ASST | 8 cut(s) | 295, 308, 359, 373, 399, 413, 481, 652 |
| SfaNI | GCATC | 3 cut(s) | 57, 425, 625 |
| SfcI | CTRYAG | 1 cut(s) | 6 |
| SinI | GGWCC | 1 cut(s) | 243 |
| SmlI | CTYRAG | 1 cut(s) | 509 |
| SmoI | CTYRAG | 1 cut(s) | 509 |
| Sse9I | AATT | 2 cut(s) | 261, 749 |
| SsiI | CCGC | 8 cut(s) | 53, 77, 113, 140, 143, 174, 360, 709 |
| SspMI | CTAG | 1 cut(s) | 45 |
| StyD4I | CCNGG | 3 cut(s) | 122, 180, 679 |
| StyI | CCWWGG | 1 cut(s) | 450 |
| TaaI | ACNGT | 1 cut(s) | 630 |
| TaiI | ACGT | 2 cut(s) | 399, 652 |
| TaqI | TCGA | 4 cut(s) | 273, 393, 433, 475 |
| TaqII | GACCGA | 2 cut(s) | 231, 390 |
| TasI | AATT | 2 cut(s) | 261, 749 |
| TauI | GCSGC | 5 cut(s) | 116, 143, 146, 176, 363 |
| TfiI | GAWTC | 2 cut(s) | 378, 705 |
| Tru1I | TTAA | 2 cut(s) | 642, 735 |
| Tru9I | TTAA | 2 cut(s) | 642, 735 |
| TscAI | CASTG | 3 cut(s) | 451, 571, 701 |
| TseI | GCWGC | 3 cut(s) | 11, 438, 441 |
| TspDTI | ATGAA | 2 cut(s) | 609, 653 |
| TspRI | CASTG | 3 cut(s) | 451, 571, 701 |
| VpaK11BI | GGWCC | 1 cut(s) | 243 |
| XceI | RCATGY | 1 cut(s) | 728 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 457 |
| XspI | CTAG | 1 cut(s) | 45 |