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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 259 |
| AclWI | GGATC | 4 cut(s) | 2, 355, 605, 658 |
| AcoI | YGGCCR | 1 cut(s) | 93 |
| AcsI | RAATTY | 3 cut(s) | 23, 325, 540 |
| AcuI | CTGAAG | 1 cut(s) | 375 |
| AcvI | CACGTG | 2 cut(s) | 623, 641 |
| AdeI | CACNNNGTG | 1 cut(s) | 641 |
| AfaI | GTAC | 1 cut(s) | 56 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 64, 246 |
| AflII | CTTAAG | 1 cut(s) | 191 |
| AflIII | ACRYGT | 1 cut(s) | 300 |
| AgsI | TTSAA | 3 cut(s) | 163, 292, 454 |
| AjiI | CACGTC | 2 cut(s) | 320, 605 |
| AjnI | CCWGG | 1 cut(s) | 518 |
| AluBI | AGCT | 1 cut(s) | 460 |
| AluI | AGCT | 1 cut(s) | 460 |
| AlwI | GGATC | 4 cut(s) | 2, 355, 605, 658 |
| AoxI | GGCC | 4 cut(s) | 93, 521, 670, 679 |
| ApoI | RAATTY | 3 cut(s) | 23, 325, 540 |
| AspLEI | GCGC | 2 cut(s) | 309, 699 |
| AspS9I | GGNCC | 3 cut(s) | 522, 670, 680 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 38, 71 |
| BalI | TGGCCA | 1 cut(s) | 95 |
| BbrPI | CACGTG | 2 cut(s) | 623, 641 |
| BbsI | GAAGAC | 1 cut(s) | 170 |
| BccI | CCATC | 3 cut(s) | 122, 137, 698 |
| BceAI | ACGGC | 1 cut(s) | 657 |
| BciT130I | CCWGG | 1 cut(s) | 520 |
| BclI | TGATCA | 1 cut(s) | 462 |
| BfaI | CTAG | 3 cut(s) | 404, 422, 720 |
| BfrI | CTTAAG | 1 cut(s) | 191 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 92, 678 |
| Bme1390I | CCNGG | 1 cut(s) | 520 |
| BmgBI | CACGTC | 2 cut(s) | 320, 605 |
| BmgT120I | GGNCC | 3 cut(s) | 522, 670, 680 |
| BmrFI | CCNGG | 1 cut(s) | 520 |
| BmsI | GCATC | 1 cut(s) | 175 |
| BpiI | GAAGAC | 1 cut(s) | 170 |
| BpuEI | CTTGAG | 1 cut(s) | 71 |
| BsaAI | YACGTR | 2 cut(s) | 623, 641 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 64, 246 |
| Bse1I | ACTGG | 1 cut(s) | 412 |
| BseBI | CCWGG | 1 cut(s) | 520 |
| BseGI | GGATG | 1 cut(s) | 190 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 64, 246 |
| BseMII | CTCAG | 2 cut(s) | 54, 474 |
| BseNI | ACTGG | 1 cut(s) | 412 |
| BsgI | GTGCAG | 1 cut(s) | 88 |
| BshFI | GGCC | 4 cut(s) | 95, 523, 672, 681 |
| BslFI | GGGAC | 2 cut(s) | 210, 544 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 64, 246 |
| BsmFI | GGGAC | 2 cut(s) | 210, 544 |
| BsnI | GGCC | 4 cut(s) | 95, 523, 672, 681 |
| Bsp143I | GATC | 5 cut(s) | 7, 360, 462, 610, 650 |
| BspACI | CCGC | 1 cut(s) | 259 |
| BspANI | GGCC | 4 cut(s) | 95, 523, 672, 681 |
| BspCNI | CTCAG | 2 cut(s) | 53, 475 |
| BspHI | TCATGA | 1 cut(s) | 214 |
| BspPI | GGATC | 4 cut(s) | 2, 355, 605, 658 |
| BspTI | CTTAAG | 1 cut(s) | 191 |
| BsrI | ACTGG | 1 cut(s) | 412 |
| BssMI | GATC | 5 cut(s) | 7, 360, 462, 610, 650 |
| Bst2UI | CCWGG | 1 cut(s) | 520 |
| Bst4CI | ACNGT | 4 cut(s) | 62, 150, 180, 241 |
| BstAFI | CTTAAG | 1 cut(s) | 191 |
| BstBAI | YACGTR | 2 cut(s) | 623, 641 |
| BstC8I | GCNNGC | 1 cut(s) | 263 |
| BstDEI | CTNAG | 2 cut(s) | 40, 483 |
| BstF5I | GGATG | 1 cut(s) | 190 |
| BstHHI | GCGC | 2 cut(s) | 309, 699 |
| BstKTI | GATC | 5 cut(s) | 10, 363, 465, 613, 653 |
| BstMBI | GATC | 5 cut(s) | 7, 360, 462, 610, 650 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 92, 678 |
| BstNI | CCWGG | 1 cut(s) | 520 |
| BstNSI | RCATGY | 1 cut(s) | 304 |
| BstSCI | CCNGG | 1 cut(s) | 518 |
| BstV2I | GAAGAC | 1 cut(s) | 170 |
| BstX2I | RGATCY | 1 cut(s) | 650 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 693 |
| BstYI | RGATCY | 1 cut(s) | 650 |
| BsuRI | GGCC | 4 cut(s) | 95, 523, 672, 681 |
| BtrI | CACGTC | 2 cut(s) | 320, 605 |
| BtsCI | GGATG | 1 cut(s) | 190 |
| BtsI | GCAGTG | 1 cut(s) | 105 |
| BtsIMutI | CAGTG | 2 cut(s) | 105, 251 |
| Cac8I | GCNNGC | 1 cut(s) | 263 |
| CciI | TCATGA | 1 cut(s) | 214 |
| CfoI | GCGC | 2 cut(s) | 309, 699 |
| Cfr13I | GGNCC | 3 cut(s) | 522, 670, 680 |
| Csp6I | GTAC | 1 cut(s) | 55 |
| CviAII | CATG | 3 cut(s) | 215, 301, 491 |
| CviQI | GTAC | 1 cut(s) | 55 |
| DdeI | CTNAG | 2 cut(s) | 40, 483 |
| DpnI | GATC | 5 cut(s) | 9, 362, 464, 612, 652 |
| DpnII | GATC | 5 cut(s) | 7, 360, 462, 610, 650 |
| DraIII | CACNNNGTG | 1 cut(s) | 641 |
| EaeI | YGGCCR | 1 cut(s) | 93 |
| Eco57I | CTGAAG | 1 cut(s) | 375 |
| Eco72I | CACGTG | 2 cut(s) | 623, 641 |
| EcoO109I | RGGNCCY | 1 cut(s) | 680 |
| EcoRII | CCWGG | 1 cut(s) | 518 |
| FaeI | CATG | 3 cut(s) | 218, 304, 494 |
| FaqI | GGGAC | 2 cut(s) | 210, 544 |
| FatI | CATG | 3 cut(s) | 214, 300, 490 |
| FauI | CCCGC | 1 cut(s) | 266 |
| FbaI | TGATCA | 1 cut(s) | 462 |
| FokI | GGATG | 1 cut(s) | 197 |
| FspBI | CTAG | 3 cut(s) | 404, 422, 720 |
| GlaI | GCGC | 2 cut(s) | 308, 698 |
| HaeIII | GGCC | 4 cut(s) | 95, 523, 672, 681 |
| HhaI | GCGC | 2 cut(s) | 309, 699 |
| Hin1II | CATG | 3 cut(s) | 218, 304, 494 |
| Hin6I | GCGC | 2 cut(s) | 307, 697 |
| HinP1I | GCGC | 2 cut(s) | 307, 697 |
| HinfI | GANTC | 2 cut(s) | 38, 370 |
| Hpy188I | TCNGA | 3 cut(s) | 43, 73, 569 |
| Hpy188III | TCNNGA | 1 cut(s) | 215 |
| HpyAV | CCTTC | 3 cut(s) | 38, 460, 671 |
| HpyCH4III | ACNGT | 4 cut(s) | 62, 150, 180, 241 |
| HpyCH4IV | ACGT | 5 cut(s) | 199, 319, 604, 622, 640 |
| HpyCH4V | TGCA | 4 cut(s) | 105, 475, 590, 635 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 92, 678 |
| HpyF3I | CTNAG | 2 cut(s) | 40, 483 |
| HpySE526I | ACGT | 5 cut(s) | 199, 319, 604, 622, 640 |
| Hsp92II | CATG | 3 cut(s) | 218, 304, 494 |
| HspAI | GCGC | 2 cut(s) | 307, 697 |
| Ksp22I | TGATCA | 1 cut(s) | 462 |
| Kzo9I | GATC | 5 cut(s) | 7, 360, 462, 610, 650 |
| LmnI | GCTCC | 1 cut(s) | 231 |
| LpnPI | CCDG | 7 cut(s) | 33, 243, 425, 505, 532, 558, 639 |
| LweI | GCATC | 1 cut(s) | 175 |
| MaeI | CTAG | 3 cut(s) | 404, 422, 720 |
| MaeII | ACGT | 5 cut(s) | 199, 319, 604, 622, 640 |
| MalI | GATC | 5 cut(s) | 9, 362, 464, 612, 652 |
| MboI | GATC | 5 cut(s) | 7, 360, 462, 610, 650 |
| MboII | GAAGA | 2 cut(s) | 175, 362 |
| MflI | RGATCY | 1 cut(s) | 650 |
| MlsI | TGGCCA | 1 cut(s) | 95 |
| MluCI | AATT | 5 cut(s) | 23, 325, 396, 540, 553 |
| MluNI | TGGCCA | 1 cut(s) | 95 |
| MlyI | GAGTC | 2 cut(s) | 32, 364 |
| MmeI | TCCRAC | 1 cut(s) | 35 |
| MnlI | CCTC | 4 cut(s) | 480, 490, 563, 693 |
| Mox20I | TGGCCA | 1 cut(s) | 95 |
| MscI | TGGCCA | 1 cut(s) | 95 |
| MseI | TTAA | 1 cut(s) | 192 |
| Msp20I | TGGCCA | 1 cut(s) | 95 |
| MspCI | CTTAAG | 1 cut(s) | 191 |
| MspR9I | CCNGG | 1 cut(s) | 520 |
| MvaI | CCWGG | 1 cut(s) | 520 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 92, 678 |
| NdeII | GATC | 5 cut(s) | 7, 360, 462, 610, 650 |
| NlaIII | CATG | 3 cut(s) | 218, 304, 494 |
| NspI | RCATGY | 1 cut(s) | 304 |
| PagI | TCATGA | 1 cut(s) | 214 |
| PciI | ACATGT | 1 cut(s) | 300 |
| PleI | GAGTC | 2 cut(s) | 32, 364 |
| PmaCI | CACGTG | 2 cut(s) | 623, 641 |
| PmlI | CACGTG | 2 cut(s) | 623, 641 |
| PpsI | GAGTC | 2 cut(s) | 32, 364 |
| Ppu21I | YACGTR | 2 cut(s) | 623, 641 |
| PscI | ACATGT | 1 cut(s) | 300 |
| Psp6I | CCWGG | 1 cut(s) | 518 |
| PspCI | CACGTG | 2 cut(s) | 623, 641 |
| PspGI | CCWGG | 1 cut(s) | 518 |
| PspPI | GGNCC | 3 cut(s) | 522, 670, 680 |
| PsuI | RGATCY | 1 cut(s) | 650 |
| RsaI | GTAC | 1 cut(s) | 56 |
| RsaNI | GTAC | 1 cut(s) | 55 |
| SaqAI | TTAA | 1 cut(s) | 192 |
| Sau3AI | GATC | 5 cut(s) | 7, 360, 462, 610, 650 |
| Sau96I | GGNCC | 3 cut(s) | 522, 670, 680 |
| SchI | GAGTC | 2 cut(s) | 32, 364 |
| ScrFI | CCNGG | 1 cut(s) | 520 |
| SfaNI | GCATC | 1 cut(s) | 175 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 678 |
| SmlI | CTYRAG | 2 cut(s) | 50, 191 |
| SmoI | CTYRAG | 2 cut(s) | 50, 191 |
| Sse9I | AATT | 5 cut(s) | 23, 325, 396, 540, 553 |
| SsiI | CCGC | 1 cut(s) | 259 |
| SspMI | CTAG | 3 cut(s) | 404, 422, 720 |
| StyD4I | CCNGG | 1 cut(s) | 518 |
| TaaI | ACNGT | 4 cut(s) | 62, 150, 180, 241 |
| TaiI | ACGT | 5 cut(s) | 202, 322, 607, 625, 643 |
| TaqI | TCGA | 1 cut(s) | 16 |
| TasI | AATT | 5 cut(s) | 23, 325, 396, 540, 553 |
| Tru1I | TTAA | 1 cut(s) | 192 |
| Tru9I | TTAA | 1 cut(s) | 192 |
| TscAI | CASTG | 2 cut(s) | 112, 251 |
| TspDTI | ATGAA | 2 cut(s) | 203, 267 |
| TspRI | CASTG | 2 cut(s) | 112, 251 |
| Vha464I | CTTAAG | 1 cut(s) | 191 |
| XapI | RAATTY | 3 cut(s) | 23, 325, 540 |
| XceI | RCATGY | 1 cut(s) | 304 |
| XspI | CTAG | 3 cut(s) | 404, 422, 720 |