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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 285 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 258 |
| AciI | CCGC | 2 cut(s) | 271, 485 |
| AclWI | GGATC | 2 cut(s) | 2, 617 |
| AcoI | YGGCCR | 1 cut(s) | 249 |
| AcsI | RAATTY | 2 cut(s) | 23, 552 |
| AcuI | CTGAAG | 2 cut(s) | 152, 387 |
| AcvI | CACGTG | 1 cut(s) | 635 |
| AfaI | GTAC | 2 cut(s) | 56, 164 |
| AfeI | AGCGCT | 1 cut(s) | 408 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 64, 247, 258 |
| AflII | CTTAAG | 1 cut(s) | 203 |
| AflIII | ACRYGT | 1 cut(s) | 312 |
| AgsI | TTSAA | 4 cut(s) | 175, 304, 466, 520 |
| AjiI | CACGTC | 1 cut(s) | 332 |
| Alw26I | GTCTC | 1 cut(s) | 338 |
| AlwI | GGATC | 2 cut(s) | 2, 617 |
| Ama87I | CYCGRG | 1 cut(s) | 557 |
| Aor51HI | AGCGCT | 1 cut(s) | 408 |
| AoxI | GGCC | 2 cut(s) | 249, 533 |
| ApoI | RAATTY | 2 cut(s) | 23, 552 |
| AspLEI | GCGC | 2 cut(s) | 321, 409 |
| AspS9I | GGNCC | 1 cut(s) | 534 |
| AvaI | CYCGRG | 1 cut(s) | 557 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 38, 71 |
| BalI | TGGCCA | 1 cut(s) | 251 |
| BbrPI | CACGTG | 1 cut(s) | 635 |
| BbsI | GAAGAC | 1 cut(s) | 182 |
| BccI | CCATC | 3 cut(s) | 66, 122, 137 |
| BcoDI | GTCTC | 1 cut(s) | 338 |
| BfmI | CTRYAG | 1 cut(s) | 343 |
| BfoI | RGCGCY | 1 cut(s) | 410 |
| BfrI | CTTAAG | 1 cut(s) | 203 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 92 |
| BmeT110I | CYCGRG | 1 cut(s) | 557 |
| BmgBI | CACGTC | 1 cut(s) | 332 |
| BmgT120I | GGNCC | 1 cut(s) | 534 |
| BmsI | GCATC | 1 cut(s) | 187 |
| BpiI | GAAGAC | 1 cut(s) | 182 |
| BpmI | CTGGAG | 1 cut(s) | 455 |
| BpuEI | CTTGAG | 1 cut(s) | 71 |
| BsaAI | YACGTR | 1 cut(s) | 635 |
| BsaJI | CCNNGG | 1 cut(s) | 558 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 64, 247, 258 |
| Bse1I | ACTGG | 1 cut(s) | 252 |
| BseDI | CCNNGG | 1 cut(s) | 558 |
| BseGI | GGATG | 3 cut(s) | 202, 477, 620 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 64, 247, 258 |
| BseMII | CTCAG | 2 cut(s) | 54, 486 |
| BseNI | ACTGG | 1 cut(s) | 252 |
| BshFI | GGCC | 2 cut(s) | 251, 535 |
| BsiHKCI | CYCGRG | 1 cut(s) | 557 |
| BslFI | GGGAC | 1 cut(s) | 556 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 64, 247, 258 |
| BsmAI | GTCTC | 1 cut(s) | 338 |
| BsmBI | CGTCTC | 1 cut(s) | 338 |
| BsmFI | GGGAC | 1 cut(s) | 556 |
| BsnI | GGCC | 2 cut(s) | 251, 535 |
| BsoBI | CYCGRG | 1 cut(s) | 557 |
| Bsp143I | GATC | 3 cut(s) | 7, 372, 622 |
| BspACI | CCGC | 2 cut(s) | 271, 485 |
| BspANI | GGCC | 2 cut(s) | 251, 535 |
| BspCNI | CTCAG | 2 cut(s) | 53, 487 |
| BspHI | TCATGA | 1 cut(s) | 226 |
| BspPI | GGATC | 2 cut(s) | 2, 617 |
| BspTI | CTTAAG | 1 cut(s) | 203 |
| BsrI | ACTGG | 1 cut(s) | 252 |
| BssECI | CCNNGG | 1 cut(s) | 558 |
| BssMI | GATC | 3 cut(s) | 7, 372, 622 |
| Bst4CI | ACNGT | 2 cut(s) | 150, 192 |
| BstAFI | CTTAAG | 1 cut(s) | 203 |
| BstBAI | YACGTR | 1 cut(s) | 635 |
| BstC8I | GCNNGC | 1 cut(s) | 275 |
| BstDEI | CTNAG | 2 cut(s) | 40, 495 |
| BstF5I | GGATG | 3 cut(s) | 202, 477, 620 |
| BstH2I | RGCGCY | 1 cut(s) | 410 |
| BstHHI | GCGC | 2 cut(s) | 321, 409 |
| BstKTI | GATC | 3 cut(s) | 10, 375, 625 |
| BstMAI | GTCTC | 1 cut(s) | 338 |
| BstMBI | GATC | 3 cut(s) | 7, 372, 622 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 92 |
| BstNSI | RCATGY | 1 cut(s) | 316 |
| BstSFI | CTRYAG | 1 cut(s) | 343 |
| BstV2I | GAAGAC | 1 cut(s) | 182 |
| BsuRI | GGCC | 2 cut(s) | 251, 535 |
| BtrI | CACGTC | 1 cut(s) | 332 |
| BtsCI | GGATG | 3 cut(s) | 202, 477, 620 |
| BtsI | GCAGTG | 1 cut(s) | 105 |
| BtsIMutI | CAGTG | 3 cut(s) | 105, 126, 263 |
| Cac8I | GCNNGC | 1 cut(s) | 275 |
| CciI | TCATGA | 1 cut(s) | 226 |
| CfoI | GCGC | 2 cut(s) | 321, 409 |
| Cfr13I | GGNCC | 1 cut(s) | 534 |
| Csp6I | GTAC | 2 cut(s) | 55, 163 |
| CviAII | CATG | 2 cut(s) | 227, 313 |
| CviJI | RGCY | 5 cut(s) | 251, 433, 494, 535, 563 |
| CviKI_1 | RGCY | 5 cut(s) | 251, 433, 494, 535, 563 |
| CviQI | GTAC | 2 cut(s) | 55, 163 |
| DdeI | CTNAG | 2 cut(s) | 40, 495 |
| DpnI | GATC | 3 cut(s) | 9, 374, 624 |
| DpnII | GATC | 3 cut(s) | 7, 372, 622 |
| EaeI | YGGCCR | 1 cut(s) | 249 |
| Eco47III | AGCGCT | 1 cut(s) | 408 |
| Eco57I | CTGAAG | 2 cut(s) | 152, 387 |
| Eco72I | CACGTG | 1 cut(s) | 635 |
| Eco88I | CYCGRG | 1 cut(s) | 557 |
| Esp3I | CGTCTC | 1 cut(s) | 338 |
| FaeI | CATG | 2 cut(s) | 230, 316 |
| FaiI | YATR | 9 cut(s) | 228, 285, 314, 371, 378, 429, 441, 504, 570 |
| FaqI | GGGAC | 1 cut(s) | 556 |
| FatI | CATG | 2 cut(s) | 226, 312 |
| FokI | GGATG | 3 cut(s) | 209, 464, 627 |
| GlaI | GCGC | 2 cut(s) | 320, 408 |
| GsuI | CTGGAG | 1 cut(s) | 455 |
| HaeII | RGCGCY | 1 cut(s) | 410 |
| HaeIII | GGCC | 2 cut(s) | 251, 535 |
| HhaI | GCGC | 2 cut(s) | 321, 409 |
| Hin1II | CATG | 2 cut(s) | 230, 316 |
| Hin6I | GCGC | 2 cut(s) | 319, 407 |
| HinP1I | GCGC | 2 cut(s) | 319, 407 |
| HinfI | GANTC | 4 cut(s) | 38, 267, 382, 453 |
| Hpy188I | TCNGA | 3 cut(s) | 43, 73, 154 |
| Hpy188III | TCNNGA | 3 cut(s) | 227, 517, 557 |
| HpyAV | CCTTC | 4 cut(s) | 38, 176, 342, 472 |
| HpyCH4III | ACNGT | 2 cut(s) | 150, 192 |
| HpyCH4IV | ACGT | 4 cut(s) | 331, 583, 634, 652 |
| HpyCH4V | TGCA | 1 cut(s) | 647 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 92 |
| HpyF3I | CTNAG | 2 cut(s) | 40, 495 |
| HpySE526I | ACGT | 4 cut(s) | 331, 583, 634, 652 |
| Hsp92II | CATG | 2 cut(s) | 230, 316 |
| HspAI | GCGC | 2 cut(s) | 319, 407 |
| Kzo9I | GATC | 3 cut(s) | 7, 372, 622 |
| LmnI | GCTCC | 1 cut(s) | 243 |
| LpnPI | CCDG | 6 cut(s) | 33, 233, 255, 274, 419, 517 |
| LweI | GCATC | 1 cut(s) | 187 |
| MaeII | ACGT | 4 cut(s) | 331, 583, 634, 652 |
| MalI | GATC | 3 cut(s) | 9, 374, 624 |
| MboI | GATC | 3 cut(s) | 7, 372, 622 |
| MboII | GAAGA | 2 cut(s) | 187, 374 |
| MlsI | TGGCCA | 1 cut(s) | 251 |
| MluCI | AATT | 3 cut(s) | 23, 337, 552 |
| MluNI | TGGCCA | 1 cut(s) | 251 |
| MlyI | GAGTC | 2 cut(s) | 32, 376 |
| MmeI | TCCRAC | 1 cut(s) | 35 |
| MnlI | CCTC | 6 cut(s) | 143, 203, 492, 502, 553, 598 |
| Mox20I | TGGCCA | 1 cut(s) | 251 |
| MscI | TGGCCA | 1 cut(s) | 251 |
| MseI | TTAA | 2 cut(s) | 204, 323 |
| Msp20I | TGGCCA | 1 cut(s) | 251 |
| MspCI | CTTAAG | 1 cut(s) | 203 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 92 |
| NdeII | GATC | 3 cut(s) | 7, 372, 622 |
| NlaIII | CATG | 2 cut(s) | 230, 316 |
| NspI | RCATGY | 1 cut(s) | 316 |
| PagI | TCATGA | 1 cut(s) | 226 |
| PciI | ACATGT | 1 cut(s) | 312 |
| PfeI | GAWTC | 2 cut(s) | 267, 453 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 258 |
| PleI | GAGTC | 2 cut(s) | 32, 376 |
| PmaCI | CACGTG | 1 cut(s) | 635 |
| PmlI | CACGTG | 1 cut(s) | 635 |
| PpsI | GAGTC | 2 cut(s) | 32, 376 |
| Ppu21I | YACGTR | 1 cut(s) | 635 |
| PscI | ACATGT | 1 cut(s) | 312 |
| PsiI | TTATAA | 1 cut(s) | 285 |
| PspCI | CACGTG | 1 cut(s) | 635 |
| PspPI | GGNCC | 1 cut(s) | 534 |
| RsaI | GTAC | 2 cut(s) | 56, 164 |
| RsaNI | GTAC | 2 cut(s) | 55, 163 |
| SaqAI | TTAA | 2 cut(s) | 204, 323 |
| Sau3AI | GATC | 3 cut(s) | 7, 372, 622 |
| Sau96I | GGNCC | 1 cut(s) | 534 |
| SchI | GAGTC | 2 cut(s) | 32, 376 |
| SfaNI | GCATC | 1 cut(s) | 187 |
| SfcI | CTRYAG | 1 cut(s) | 343 |
| SmlI | CTYRAG | 2 cut(s) | 50, 203 |
| SmoI | CTYRAG | 2 cut(s) | 50, 203 |
| Sse9I | AATT | 3 cut(s) | 23, 337, 552 |
| SsiI | CCGC | 2 cut(s) | 271, 485 |
| TaaI | ACNGT | 2 cut(s) | 150, 192 |
| TaiI | ACGT | 4 cut(s) | 334, 586, 637, 655 |
| TaqI | TCGA | 1 cut(s) | 16 |
| TasI | AATT | 3 cut(s) | 23, 337, 552 |
| TfiI | GAWTC | 2 cut(s) | 267, 453 |
| Tru1I | TTAA | 2 cut(s) | 204, 323 |
| Tru9I | TTAA | 2 cut(s) | 204, 323 |
| TscAI | CASTG | 3 cut(s) | 112, 133, 263 |
| TspDTI | ATGAA | 2 cut(s) | 215, 593 |
| TspRI | CASTG | 3 cut(s) | 112, 133, 263 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 258 |
| Vha464I | CTTAAG | 1 cut(s) | 203 |
| XapI | RAATTY | 2 cut(s) | 23, 552 |
| XceI | RCATGY | 1 cut(s) | 316 |