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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 845 |
| AccIII | TCCGGA | 1 cut(s) | 703 |
| AciI | CCGC | 1 cut(s) | 398 |
| AclWI | GGATC | 2 cut(s) | 12, 764 |
| AcsI | RAATTY | 2 cut(s) | 699, 739 |
| AcuI | CTGAAG | 2 cut(s) | 366, 534 |
| AcvI | CACGTG | 2 cut(s) | 782, 800 |
| AdeI | CACNNNGTG | 1 cut(s) | 800 |
| AfaI | GTAC | 1 cut(s) | 56 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 64 |
| AflII | CTTAAG | 1 cut(s) | 182 |
| AgsI | TTSAA | 7 cut(s) | 37, 154, 283, 451, 613, 667, 745 |
| AjiI | CACGTC | 3 cut(s) | 311, 479, 764 |
| AjnI | CCWGG | 1 cut(s) | 220 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 216, 248 |
| AlwI | GGATC | 2 cut(s) | 12, 764 |
| Aor13HI | TCCGGA | 1 cut(s) | 703 |
| AoxI | GGCC | 1 cut(s) | 680 |
| ApoI | RAATTY | 2 cut(s) | 699, 739 |
| AspLEI | GCGC | 2 cut(s) | 300, 468 |
| AspS9I | GGNCC | 1 cut(s) | 681 |
| AsuNHI | GCTAGC | 2 cut(s) | 394, 562 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 38, 71 |
| BanI | GGYRCC | 1 cut(s) | 845 |
| BbrPI | CACGTG | 2 cut(s) | 782, 800 |
| BbsI | GAAGAC | 1 cut(s) | 161 |
| BccI | CCATC | 1 cut(s) | 66 |
| BciT130I | CCWGG | 1 cut(s) | 222 |
| BclI | TGATCA | 1 cut(s) | 621 |
| BfaI | CTAG | 3 cut(s) | 395, 563, 678 |
| BfrI | CTTAAG | 1 cut(s) | 182 |
| Bme1390I | CCNGG | 1 cut(s) | 222 |
| BmgBI | CACGTC | 3 cut(s) | 311, 479, 764 |
| BmgT120I | GGNCC | 1 cut(s) | 681 |
| BmiI | GGNNCC | 1 cut(s) | 847 |
| BmrFI | CCNGG | 1 cut(s) | 222 |
| BmrI | ACTGGG | 1 cut(s) | 696 |
| BmtI | GCTAGC | 2 cut(s) | 398, 566 |
| BmuI | ACTGGG | 1 cut(s) | 696 |
| BpiI | GAAGAC | 1 cut(s) | 161 |
| BpmI | CTGGAG | 2 cut(s) | 434, 602 |
| BpuEI | CTTGAG | 1 cut(s) | 71 |
| BsaAI | YACGTR | 3 cut(s) | 782, 800, 816 |
| BsaJI | CCNNGG | 1 cut(s) | 220 |
| BsaWI | WCCGGW | 1 cut(s) | 703 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 64 |
| Bse1I | ACTGG | 1 cut(s) | 691 |
| BseAI | TCCGGA | 1 cut(s) | 703 |
| BseBI | CCWGG | 1 cut(s) | 222 |
| BseDI | CCNNGG | 1 cut(s) | 220 |
| BseGI | GGATG | 3 cut(s) | 7, 181, 825 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 64 |
| BseMII | CTCAG | 2 cut(s) | 35, 54 |
| BseNI | ACTGG | 1 cut(s) | 691 |
| BshFI | GGCC | 1 cut(s) | 682 |
| BshNI | GGYRCC | 1 cut(s) | 845 |
| BsiSI | CCGG | 1 cut(s) | 704 |
| BslFI | GGGAC | 3 cut(s) | 201, 703, 822 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 64 |
| BsmFI | GGGAC | 3 cut(s) | 201, 703, 822 |
| BsnI | GGCC | 1 cut(s) | 682 |
| Bsp13I | TCCGGA | 1 cut(s) | 703 |
| Bsp143I | GATC | 3 cut(s) | 4, 621, 769 |
| BspACI | CCGC | 1 cut(s) | 398 |
| BspANI | GGCC | 1 cut(s) | 682 |
| BspCNI | CTCAG | 2 cut(s) | 34, 53 |
| BspEI | TCCGGA | 1 cut(s) | 703 |
| BspLI | GGNNCC | 1 cut(s) | 847 |
| BspOI | GCTAGC | 2 cut(s) | 398, 566 |
| BspPI | GGATC | 2 cut(s) | 12, 764 |
| BspT107I | GGYRCC | 1 cut(s) | 845 |
| BspTI | CTTAAG | 1 cut(s) | 182 |
| BsrI | ACTGG | 1 cut(s) | 691 |
| BssECI | CCNNGG | 1 cut(s) | 220 |
| BssMI | GATC | 3 cut(s) | 4, 621, 769 |
| Bst2UI | CCWGG | 1 cut(s) | 222 |
| Bst4CI | ACNGT | 2 cut(s) | 85, 232 |
| Bst6I | CTCTTC | 2 cut(s) | 322, 490 |
| BstAFI | CTTAAG | 1 cut(s) | 182 |
| BstBAI | YACGTR | 3 cut(s) | 782, 800, 816 |
| BstC8I | GCNNGC | 2 cut(s) | 396, 564 |
| BstDEI | CTNAG | 2 cut(s) | 21, 40 |
| BstF5I | GGATG | 3 cut(s) | 7, 181, 825 |
| BstHHI | GCGC | 2 cut(s) | 300, 468 |
| BstKTI | GATC | 3 cut(s) | 7, 624, 772 |
| BstMBI | GATC | 3 cut(s) | 4, 621, 769 |
| BstNI | CCWGG | 1 cut(s) | 222 |
| BstSCI | CCNGG | 1 cut(s) | 220 |
| BstV2I | GAAGAC | 1 cut(s) | 161 |
| BsuRI | GGCC | 1 cut(s) | 682 |
| BtrI | CACGTC | 3 cut(s) | 311, 479, 764 |
| BtsCI | GGATG | 3 cut(s) | 7, 181, 825 |
| BtsI | GCAGTG | 1 cut(s) | 105 |
| BtsIMutI | CAGTG | 3 cut(s) | 105, 242, 684 |
| Cac8I | GCNNGC | 2 cut(s) | 396, 564 |
| CfoI | GCGC | 2 cut(s) | 300, 468 |
| Cfr13I | GGNCC | 1 cut(s) | 681 |
| Csp6I | GTAC | 1 cut(s) | 55 |
| CviJI | RGCY | 5 cut(s) | 412, 580, 627, 682, 710 |
| CviKI_1 | RGCY | 5 cut(s) | 412, 580, 627, 682, 710 |
| CviQI | GTAC | 1 cut(s) | 55 |
| DdeI | CTNAG | 2 cut(s) | 21, 40 |
| DpnI | GATC | 3 cut(s) | 6, 623, 771 |
| DpnII | GATC | 3 cut(s) | 4, 621, 769 |
| DraIII | CACNNNGTG | 1 cut(s) | 800 |
| Eam1104I | CTCTTC | 2 cut(s) | 322, 490 |
| EarI | CTCTTC | 2 cut(s) | 322, 490 |
| Eco57I | CTGAAG | 2 cut(s) | 366, 534 |
| Eco72I | CACGTG | 2 cut(s) | 782, 800 |
| EcoRII | CCWGG | 1 cut(s) | 220 |
| FaqI | GGGAC | 3 cut(s) | 201, 703, 822 |
| FbaI | TGATCA | 1 cut(s) | 621 |
| FokI | GGATG | 2 cut(s) | 188, 832 |
| FspBI | CTAG | 3 cut(s) | 395, 563, 678 |
| GlaI | GCGC | 2 cut(s) | 299, 467 |
| GsuI | CTGGAG | 2 cut(s) | 434, 602 |
| HaeIII | GGCC | 1 cut(s) | 682 |
| HapII | CCGG | 1 cut(s) | 704 |
| HhaI | GCGC | 2 cut(s) | 300, 468 |
| Hin6I | GCGC | 2 cut(s) | 298, 466 |
| HinP1I | GCGC | 2 cut(s) | 298, 466 |
| HinfI | GANTC | 5 cut(s) | 246, 361, 432, 529, 600 |
| HpaII | CCGG | 1 cut(s) | 704 |
| Hpy188I | TCNGA | 2 cut(s) | 43, 73 |
| Hpy188III | TCNNGA | 4 cut(s) | 34, 206, 664, 704 |
| HpyAV | CCTTC | 3 cut(s) | 38, 451, 619 |
| HpyCH4III | ACNGT | 2 cut(s) | 85, 232 |
| HpyCH4IV | ACGT | 6 cut(s) | 310, 478, 763, 781, 799, 815 |
| HpyCH4V | TGCA | 3 cut(s) | 634, 794, 839 |
| HpyF3I | CTNAG | 2 cut(s) | 21, 40 |
| HpySE526I | ACGT | 6 cut(s) | 310, 478, 763, 781, 799, 815 |
| HspAI | GCGC | 2 cut(s) | 298, 466 |
| Kpn2I | TCCGGA | 1 cut(s) | 703 |
| Ksp22I | TGATCA | 1 cut(s) | 621 |
| Kzo9I | GATC | 3 cut(s) | 4, 621, 769 |
| LmnI | GCTCC | 1 cut(s) | 222 |
| LpnPI | CCDG | 6 cut(s) | 207, 234, 398, 566, 672, 717 |
| MaeI | CTAG | 3 cut(s) | 395, 563, 678 |
| MaeII | ACGT | 6 cut(s) | 310, 478, 763, 781, 799, 815 |
| MalI | GATC | 3 cut(s) | 6, 623, 771 |
| MboI | GATC | 3 cut(s) | 4, 621, 769 |
| MboII | GAAGA | 4 cut(s) | 166, 339, 507, 521 |
| MluCI | AATT | 7 cut(s) | 167, 277, 316, 484, 699, 712, 739 |
| MlyI | GAGTC | 1 cut(s) | 523 |
| MmeI | TCCRAC | 1 cut(s) | 35 |
| MnlI | CCTC | 4 cut(s) | 30, 639, 649, 700 |
| MroI | TCCGGA | 1 cut(s) | 703 |
| MseI | TTAA | 5 cut(s) | 183, 302, 315, 470, 483 |
| MspCI | CTTAAG | 1 cut(s) | 182 |
| MspI | CCGG | 1 cut(s) | 704 |
| MspR9I | CCNGG | 1 cut(s) | 222 |
| MvaI | CCWGG | 1 cut(s) | 222 |
| NdeII | GATC | 3 cut(s) | 4, 621, 769 |
| NheI | GCTAGC | 2 cut(s) | 394, 562 |
| NlaIV | GGNNCC | 1 cut(s) | 847 |
| PfeI | GAWTC | 4 cut(s) | 246, 361, 432, 600 |
| PleI | GAGTC | 1 cut(s) | 523 |
| PmaCI | CACGTG | 2 cut(s) | 782, 800 |
| PmlI | CACGTG | 2 cut(s) | 782, 800 |
| PpsI | GAGTC | 1 cut(s) | 523 |
| Ppu21I | YACGTR | 3 cut(s) | 782, 800, 816 |
| Psp6I | CCWGG | 1 cut(s) | 220 |
| PspCI | CACGTG | 2 cut(s) | 782, 800 |
| PspGI | CCWGG | 1 cut(s) | 220 |
| PspN4I | GGNNCC | 1 cut(s) | 847 |
| PspPI | GGNCC | 1 cut(s) | 681 |
| RsaI | GTAC | 1 cut(s) | 56 |
| RsaNI | GTAC | 1 cut(s) | 55 |
| SaqAI | TTAA | 5 cut(s) | 183, 302, 315, 470, 483 |
| Sau3AI | GATC | 3 cut(s) | 4, 621, 769 |
| Sau96I | GGNCC | 1 cut(s) | 681 |
| SchI | GAGTC | 1 cut(s) | 523 |
| ScrFI | CCNGG | 1 cut(s) | 222 |
| SmlI | CTYRAG | 2 cut(s) | 50, 182 |
| SmoI | CTYRAG | 2 cut(s) | 50, 182 |
| Sse9I | AATT | 7 cut(s) | 167, 277, 316, 484, 699, 712, 739 |
| SsiI | CCGC | 1 cut(s) | 398 |
| SspMI | CTAG | 3 cut(s) | 395, 563, 678 |
| StyD4I | CCNGG | 1 cut(s) | 220 |
| TaaI | ACNGT | 2 cut(s) | 85, 232 |
| TaiI | ACGT | 6 cut(s) | 313, 481, 766, 784, 802, 818 |
| TaqI | TCGA | 2 cut(s) | 16, 444 |
| TasI | AATT | 7 cut(s) | 167, 277, 316, 484, 699, 712, 739 |
| TfiI | GAWTC | 4 cut(s) | 246, 361, 432, 600 |
| Tru1I | TTAA | 5 cut(s) | 183, 302, 315, 470, 483 |
| Tru9I | TTAA | 5 cut(s) | 183, 302, 315, 470, 483 |
| TscAI | CASTG | 3 cut(s) | 112, 242, 691 |
| TspDTI | ATGAA | 1 cut(s) | 150 |
| TspRI | CASTG | 3 cut(s) | 112, 242, 691 |
| Vha464I | CTTAAG | 1 cut(s) | 182 |
| XapI | RAATTY | 2 cut(s) | 699, 739 |
| XspI | CTAG | 3 cut(s) | 395, 563, 678 |