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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 3 cut(s) | 2, 608, 669 |
| AcoI | YGGCCR | 1 cut(s) | 240 |
| AcsI | RAATTY | 2 cut(s) | 258, 543 |
| AcuI | CTGAAG | 2 cut(s) | 143, 378 |
| AfaI | GTAC | 2 cut(s) | 56, 155 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 64, 238, 249, 594 |
| AflII | CTTAAG | 2 cut(s) | 194, 314 |
| AflIII | ACRYGT | 1 cut(s) | 303 |
| AgsI | TTSAA | 4 cut(s) | 166, 295, 457, 511 |
| AjiI | CACGTC | 1 cut(s) | 608 |
| AjnI | CCWGG | 1 cut(s) | 521 |
| Alw26I | GTCTC | 1 cut(s) | 484 |
| AlwI | GGATC | 3 cut(s) | 2, 608, 669 |
| Ama87I | CYCGRG | 1 cut(s) | 548 |
| AoxI | GGCC | 2 cut(s) | 240, 524 |
| ApoI | RAATTY | 2 cut(s) | 258, 543 |
| AseI | ATTAAT | 1 cut(s) | 464 |
| AspLEI | GCGC | 1 cut(s) | 312 |
| AspS9I | GGNCC | 1 cut(s) | 525 |
| AsuHPI | GGTGA | 1 cut(s) | 143 |
| AvaI | CYCGRG | 1 cut(s) | 548 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 38, 71 |
| BbsI | GAAGAC | 1 cut(s) | 173 |
| BccI | CCATC | 1 cut(s) | 66 |
| BceAI | ACGGC | 1 cut(s) | 227 |
| BciT130I | CCWGG | 1 cut(s) | 523 |
| BcoDI | GTCTC | 1 cut(s) | 484 |
| BfaI | CTAG | 1 cut(s) | 407 |
| BfrI | CTTAAG | 2 cut(s) | 194, 314 |
| Bme1390I | CCNGG | 1 cut(s) | 523 |
| BmeT110I | CYCGRG | 1 cut(s) | 548 |
| BmgBI | CACGTC | 1 cut(s) | 608 |
| BmgT120I | GGNCC | 1 cut(s) | 525 |
| BmrFI | CCNGG | 1 cut(s) | 523 |
| BmrI | ACTGGG | 1 cut(s) | 540 |
| BmsI | GCATC | 2 cut(s) | 178, 666 |
| BmuI | ACTGGG | 1 cut(s) | 540 |
| BpiI | GAAGAC | 1 cut(s) | 173 |
| BpuEI | CTTGAG | 1 cut(s) | 71 |
| BsaAI | YACGTR | 1 cut(s) | 626 |
| BsaJI | CCNNGG | 1 cut(s) | 549 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 64, 238, 249, 594 |
| Bse1I | ACTGG | 3 cut(s) | 243, 415, 535 |
| BseBI | CCWGG | 1 cut(s) | 523 |
| BseDI | CCNNGG | 1 cut(s) | 549 |
| BseGI | GGATG | 1 cut(s) | 193 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 64, 238, 249, 594 |
| BseMII | CTCAG | 3 cut(s) | 12, 54, 477 |
| BseNI | ACTGG | 3 cut(s) | 243, 415, 535 |
| BshFI | GGCC | 2 cut(s) | 242, 526 |
| BsiHKCI | CYCGRG | 1 cut(s) | 548 |
| BslFI | GGGAC | 2 cut(s) | 213, 547 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 64, 238, 249, 594 |
| BsmAI | GTCTC | 1 cut(s) | 484 |
| BsmFI | GGGAC | 2 cut(s) | 213, 547 |
| BsnI | GGCC | 2 cut(s) | 242, 526 |
| BsoBI | CYCGRG | 1 cut(s) | 548 |
| Bsp143I | GATC | 4 cut(s) | 7, 363, 613, 661 |
| BspANI | GGCC | 2 cut(s) | 242, 526 |
| BspCNI | CTCAG | 3 cut(s) | 13, 53, 478 |
| BspHI | TCATGA | 1 cut(s) | 217 |
| BspPI | GGATC | 3 cut(s) | 2, 608, 669 |
| BspTI | CTTAAG | 2 cut(s) | 194, 314 |
| BsrI | ACTGG | 3 cut(s) | 243, 415, 535 |
| BssECI | CCNNGG | 1 cut(s) | 549 |
| BssMI | GATC | 4 cut(s) | 7, 363, 613, 661 |
| Bst2UI | CCWGG | 1 cut(s) | 523 |
| Bst4CI | ACNGT | 1 cut(s) | 183 |
| BstAFI | CTTAAG | 2 cut(s) | 194, 314 |
| BstBAI | YACGTR | 1 cut(s) | 626 |
| BstC8I | GCNNGC | 1 cut(s) | 266 |
| BstDEI | CTNAG | 3 cut(s) | 21, 40, 486 |
| BstF5I | GGATG | 1 cut(s) | 193 |
| BstHHI | GCGC | 1 cut(s) | 312 |
| BstKTI | GATC | 4 cut(s) | 10, 366, 616, 664 |
| BstMAI | GTCTC | 1 cut(s) | 484 |
| BstMBI | GATC | 4 cut(s) | 7, 363, 613, 661 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 92 |
| BstNI | CCWGG | 1 cut(s) | 523 |
| BstNSI | RCATGY | 1 cut(s) | 307 |
| BstSCI | CCNGG | 1 cut(s) | 521 |
| BstV2I | GAAGAC | 1 cut(s) | 173 |
| BsuRI | GGCC | 2 cut(s) | 242, 526 |
| BtrI | CACGTC | 1 cut(s) | 608 |
| BtsCI | GGATG | 1 cut(s) | 193 |
| BtsI | GCAGTG | 1 cut(s) | 105 |
| BtsIMutI | CAGTG | 3 cut(s) | 105, 254, 528 |
| Cac8I | GCNNGC | 1 cut(s) | 266 |
| CciI | TCATGA | 1 cut(s) | 217 |
| CfoI | GCGC | 1 cut(s) | 312 |
| Cfr13I | GGNCC | 1 cut(s) | 525 |
| Csp6I | GTAC | 2 cut(s) | 55, 154 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 316, 351 |
| CviAII | CATG | 6 cut(s) | 218, 304, 635, 644, 656, 705 |
| CviJI | RGCY | 6 cut(s) | 5, 242, 471, 485, 526, 554 |
| CviKI_1 | RGCY | 6 cut(s) | 5, 242, 471, 485, 526, 554 |
| CviQI | GTAC | 2 cut(s) | 55, 154 |
| DdeI | CTNAG | 3 cut(s) | 21, 40, 486 |
| DpnI | GATC | 4 cut(s) | 9, 365, 615, 663 |
| DpnII | GATC | 4 cut(s) | 7, 363, 613, 661 |
| EaeI | YGGCCR | 1 cut(s) | 240 |
| Eco57I | CTGAAG | 2 cut(s) | 143, 378 |
| Eco88I | CYCGRG | 1 cut(s) | 548 |
| EcoRI | GAATTC | 1 cut(s) | 258 |
| EcoRII | CCWGG | 1 cut(s) | 521 |
| FaeI | CATG | 6 cut(s) | 221, 307, 638, 647, 659, 708 |
| FaqI | GGGAC | 2 cut(s) | 213, 547 |
| FatI | CATG | 6 cut(s) | 217, 303, 634, 643, 655, 704 |
| FokI | GGATG | 1 cut(s) | 200 |
| FspBI | CTAG | 1 cut(s) | 407 |
| GlaI | GCGC | 1 cut(s) | 311 |
| HaeIII | GGCC | 2 cut(s) | 242, 526 |
| HhaI | GCGC | 1 cut(s) | 312 |
| Hin1II | CATG | 6 cut(s) | 221, 307, 638, 647, 659, 708 |
| Hin6I | GCGC | 1 cut(s) | 310 |
| HinP1I | GCGC | 1 cut(s) | 310 |
| HincII | GTYRAC | 1 cut(s) | 694 |
| HindII | GTYRAC | 1 cut(s) | 694 |
| HinfI | GANTC | 3 cut(s) | 38, 373, 444 |
| HphI | GGTGA | 1 cut(s) | 143 |
| Hpy166II | GTNNAC | 1 cut(s) | 694 |
| Hpy188I | TCNGA | 1 cut(s) | 43 |
| Hpy188III | TCNNGA | 3 cut(s) | 218, 508, 548 |
| Hpy8I | GTNNAC | 1 cut(s) | 694 |
| HpyAV | CCTTC | 4 cut(s) | 38, 167, 333, 463 |
| HpyCH4III | ACNGT | 1 cut(s) | 183 |
| HpyCH4IV | ACGT | 3 cut(s) | 202, 607, 625 |
| HpyCH4V | TGCA | 4 cut(s) | 478, 593, 638, 679 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 92 |
| HpyF3I | CTNAG | 3 cut(s) | 21, 40, 486 |
| HpySE526I | ACGT | 3 cut(s) | 202, 607, 625 |
| Hsp92II | CATG | 6 cut(s) | 221, 307, 638, 647, 659, 708 |
| HspAI | GCGC | 1 cut(s) | 310 |
| Kzo9I | GATC | 4 cut(s) | 7, 363, 613, 661 |
| LmnI | GCTCC | 1 cut(s) | 234 |
| LpnPI | CCDG | 7 cut(s) | 33, 224, 246, 428, 508, 516, 535 |
| LweI | GCATC | 2 cut(s) | 178, 666 |
| MaeI | CTAG | 1 cut(s) | 407 |
| MaeII | ACGT | 3 cut(s) | 202, 607, 625 |
| MalI | GATC | 4 cut(s) | 9, 365, 615, 663 |
| MboI | GATC | 4 cut(s) | 7, 363, 613, 661 |
| MboII | GAAGA | 2 cut(s) | 178, 365 |
| MluCI | AATT | 5 cut(s) | 258, 328, 461, 543, 556 |
| MlyI | GAGTC | 2 cut(s) | 32, 367 |
| MmeI | TCCRAC | 2 cut(s) | 35, 405 |
| MnlI | CCTC | 1 cut(s) | 544 |
| MseI | TTAA | 3 cut(s) | 195, 315, 464 |
| MslI | CAYNNNNRTG | 1 cut(s) | 302 |
| MspCI | CTTAAG | 2 cut(s) | 194, 314 |
| MspR9I | CCNGG | 1 cut(s) | 523 |
| MvaI | CCWGG | 1 cut(s) | 523 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 92 |
| NdeII | GATC | 4 cut(s) | 7, 363, 613, 661 |
| NlaIII | CATG | 6 cut(s) | 221, 307, 638, 647, 659, 708 |
| NspI | RCATGY | 1 cut(s) | 307 |
| PagI | TCATGA | 1 cut(s) | 217 |
| PciI | ACATGT | 1 cut(s) | 303 |
| PfeI | GAWTC | 1 cut(s) | 444 |
| PleI | GAGTC | 2 cut(s) | 32, 367 |
| PpsI | GAGTC | 2 cut(s) | 32, 367 |
| Ppu21I | YACGTR | 1 cut(s) | 626 |
| PscI | ACATGT | 1 cut(s) | 303 |
| PshBI | ATTAAT | 1 cut(s) | 464 |
| Psp6I | CCWGG | 1 cut(s) | 521 |
| PspGI | CCWGG | 1 cut(s) | 521 |
| PspPI | GGNCC | 1 cut(s) | 525 |
| RsaI | GTAC | 2 cut(s) | 56, 155 |
| RsaNI | GTAC | 2 cut(s) | 55, 154 |
| RseI | CAYNNNNRTG | 1 cut(s) | 302 |
| SaqAI | TTAA | 3 cut(s) | 195, 315, 464 |
| Sau3AI | GATC | 4 cut(s) | 7, 363, 613, 661 |
| Sau96I | GGNCC | 1 cut(s) | 525 |
| SchI | GAGTC | 2 cut(s) | 32, 367 |
| ScrFI | CCNGG | 1 cut(s) | 523 |
| SfaNI | GCATC | 2 cut(s) | 178, 666 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 302 |
| SmlI | CTYRAG | 3 cut(s) | 50, 194, 314 |
| SmoI | CTYRAG | 3 cut(s) | 50, 194, 314 |
| Sse9I | AATT | 5 cut(s) | 258, 328, 461, 543, 556 |
| SspMI | CTAG | 1 cut(s) | 407 |
| StyD4I | CCNGG | 1 cut(s) | 521 |
| TaaI | ACNGT | 1 cut(s) | 183 |
| TaiI | ACGT | 3 cut(s) | 205, 610, 628 |
| TaqI | TCGA | 1 cut(s) | 16 |
| TasI | AATT | 5 cut(s) | 258, 328, 461, 543, 556 |
| TfiI | GAWTC | 1 cut(s) | 444 |
| Tru1I | TTAA | 3 cut(s) | 195, 315, 464 |
| Tru9I | TTAA | 3 cut(s) | 195, 315, 464 |
| TscAI | CASTG | 3 cut(s) | 112, 254, 535 |
| TspDTI | ATGAA | 2 cut(s) | 150, 206 |
| TspGWI | ACGGA | 1 cut(s) | 314 |
| TspRI | CASTG | 3 cut(s) | 112, 254, 535 |
| Vha464I | CTTAAG | 2 cut(s) | 194, 314 |
| VspI | ATTAAT | 1 cut(s) | 464 |
| XapI | RAATTY | 2 cut(s) | 258, 543 |
| XceI | RCATGY | 1 cut(s) | 307 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 641 |
| XspI | CTAG | 1 cut(s) | 407 |