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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 699, 896 |
| AatII | GACGTC | 1 cut(s) | 900 |
| AccB1I | GGYRCC | 1 cut(s) | 778 |
| AciI | CCGC | 1 cut(s) | 319 |
| AclWI | GGATC | 3 cut(s) | 2, 185, 665 |
| AcsI | RAATTY | 4 cut(s) | 23, 385, 600, 961 |
| AcuI | CTGAAG | 3 cut(s) | 200, 435, 777 |
| AcvI | CACGTG | 1 cut(s) | 683 |
| AcyI | GRCGYC | 1 cut(s) | 897 |
| AfaI | GTAC | 3 cut(s) | 56, 212, 402 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 64, 205, 306 |
| AflII | CTTAAG | 1 cut(s) | 251 |
| AflIII | ACRYGT | 2 cut(s) | 30, 664 |
| AgsI | TTSAA | 5 cut(s) | 223, 352, 514, 922, 960 |
| AjiI | CACGTC | 2 cut(s) | 665, 695 |
| AluBI | AGCT | 1 cut(s) | 520 |
| AluI | AGCT | 1 cut(s) | 520 |
| AlwI | GGATC | 3 cut(s) | 2, 185, 665 |
| AoxI | GGCC | 3 cut(s) | 709, 745, 883 |
| ApeKI | GCWGC | 1 cut(s) | 821 |
| ApoI | RAATTY | 4 cut(s) | 23, 385, 600, 961 |
| AspLEI | GCGC | 1 cut(s) | 369 |
| AspS9I | GGNCC | 2 cut(s) | 710, 746 |
| AsuHPI | GGTGA | 1 cut(s) | 163 |
| AxyI | CCTNAGG | 1 cut(s) | 606 |
| BaeGI | GKGCMC | 1 cut(s) | 781 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 38, 71 |
| BanI | GGYRCC | 1 cut(s) | 778 |
| BbrPI | CACGTG | 1 cut(s) | 683 |
| BbsI | GAAGAC | 2 cut(s) | 230, 434 |
| BbvI | GCAGC | 1 cut(s) | 833 |
| BccI | CCATC | 3 cut(s) | 66, 148, 728 |
| BclI | TGATCA | 2 cut(s) | 420, 522 |
| BfaI | CTAG | 2 cut(s) | 464, 750 |
| BfrI | CTTAAG | 1 cut(s) | 251 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 92 |
| BisI | GCNGC | 1 cut(s) | 822 |
| BlsI | GCNGC | 1 cut(s) | 823 |
| BmgBI | CACGTC | 2 cut(s) | 665, 695 |
| BmgT120I | GGNCC | 2 cut(s) | 710, 746 |
| BmiI | GGNNCC | 1 cut(s) | 780 |
| BmsI | GCATC | 2 cut(s) | 235, 943 |
| BpiI | GAAGAC | 2 cut(s) | 230, 434 |
| BpuEI | CTTGAG | 1 cut(s) | 71 |
| BsaAI | YACGTR | 1 cut(s) | 683 |
| BsaHI | GRCGYC | 1 cut(s) | 897 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 64, 205, 306 |
| Bse1I | ACTGG | 1 cut(s) | 472 |
| Bse21I | CCTNAGG | 1 cut(s) | 606 |
| BseGI | GGATG | 2 cut(s) | 250, 958 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 64, 205, 306 |
| BseMII | CTCAG | 5 cut(s) | 54, 167, 534, 597, 956 |
| BseNI | ACTGG | 1 cut(s) | 472 |
| BseSI | GKGCMC | 1 cut(s) | 781 |
| BseXI | GCAGC | 1 cut(s) | 833 |
| BshFI | GGCC | 3 cut(s) | 711, 747, 885 |
| BshNI | GGYRCC | 1 cut(s) | 778 |
| BslFI | GGGAC | 2 cut(s) | 270, 705 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 64, 205, 306 |
| BsmFI | GGGAC | 2 cut(s) | 270, 705 |
| BsnI | GGCC | 3 cut(s) | 711, 747, 885 |
| Bsp1286I | GDGCHC | 1 cut(s) | 781 |
| Bsp143I | GATC | 5 cut(s) | 7, 190, 420, 522, 670 |
| BspACI | CCGC | 1 cut(s) | 319 |
| BspANI | GGCC | 3 cut(s) | 711, 747, 885 |
| BspCNI | CTCAG | 5 cut(s) | 53, 168, 535, 598, 955 |
| BspHI | TCATGA | 1 cut(s) | 274 |
| BspLI | GGNNCC | 1 cut(s) | 780 |
| BspPI | GGATC | 3 cut(s) | 2, 185, 665 |
| BspT107I | GGYRCC | 1 cut(s) | 778 |
| BspTI | CTTAAG | 1 cut(s) | 251 |
| BsrI | ACTGG | 1 cut(s) | 472 |
| BssMI | GATC | 5 cut(s) | 7, 190, 420, 522, 670 |
| BssNI | GRCGYC | 1 cut(s) | 897 |
| Bst4CI | ACNGT | 2 cut(s) | 240, 301 |
| BstACI | GRCGYC | 1 cut(s) | 897 |
| BstAFI | CTTAAG | 1 cut(s) | 251 |
| BstBAI | YACGTR | 1 cut(s) | 683 |
| BstC8I | GCNNGC | 4 cut(s) | 323, 745, 808, 883 |
| BstDEI | CTNAG | 6 cut(s) | 40, 176, 543, 606, 783, 942 |
| BstF5I | GGATG | 2 cut(s) | 250, 958 |
| BstHHI | GCGC | 1 cut(s) | 369 |
| BstKTI | GATC | 5 cut(s) | 10, 193, 423, 525, 673 |
| BstMBI | GATC | 5 cut(s) | 7, 190, 420, 522, 670 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 92 |
| BstNSI | RCATGY | 1 cut(s) | 34 |
| BstSLI | GKGCMC | 1 cut(s) | 781 |
| BstV1I | GCAGC | 1 cut(s) | 833 |
| BstV2I | GAAGAC | 2 cut(s) | 230, 434 |
| Bsu36I | CCTNAGG | 1 cut(s) | 606 |
| BsuRI | GGCC | 3 cut(s) | 711, 747, 885 |
| BtrI | CACGTC | 2 cut(s) | 665, 695 |
| BtsCI | GGATG | 2 cut(s) | 250, 958 |
| BtsI | GCAGTG | 1 cut(s) | 105 |
| BtsIMutI | CAGTG | 2 cut(s) | 105, 311 |
| Cac8I | GCNNGC | 4 cut(s) | 323, 745, 808, 883 |
| CciI | TCATGA | 1 cut(s) | 274 |
| CfoI | GCGC | 1 cut(s) | 369 |
| Cfr13I | GGNCC | 2 cut(s) | 710, 746 |
| Csp6I | GTAC | 3 cut(s) | 55, 211, 401 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 676, 711 |
| CviAII | CATG | 5 cut(s) | 31, 275, 355, 758, 887 |
| CviJI | RGCY | 8 cut(s) | 520, 542, 611, 711, 747, 824, 863, 885 |
| CviKI_1 | RGCY | 8 cut(s) | 520, 542, 611, 711, 747, 824, 863, 885 |
| CviQI | GTAC | 3 cut(s) | 55, 211, 401 |
| DdeI | CTNAG | 6 cut(s) | 40, 176, 543, 606, 783, 942 |
| DpnI | GATC | 5 cut(s) | 9, 192, 422, 524, 672 |
| DpnII | GATC | 5 cut(s) | 7, 190, 420, 522, 670 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 699, 896 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 699, 896 |
| Eco57I | CTGAAG | 3 cut(s) | 200, 435, 777 |
| Eco72I | CACGTG | 1 cut(s) | 683 |
| Eco81I | CCTNAGG | 1 cut(s) | 606 |
| EcoO109I | RGGNCCY | 1 cut(s) | 710 |
| FaeI | CATG | 5 cut(s) | 34, 278, 358, 761, 890 |
| FaqI | GGGAC | 2 cut(s) | 270, 705 |
| FatI | CATG | 5 cut(s) | 30, 274, 354, 757, 886 |
| FbaI | TGATCA | 2 cut(s) | 420, 522 |
| Fnu4HI | GCNGC | 1 cut(s) | 822 |
| FokI | GGATG | 2 cut(s) | 257, 965 |
| Fsp4HI | GCNGC | 1 cut(s) | 822 |
| FspBI | CTAG | 2 cut(s) | 464, 750 |
| GlaI | GCGC | 1 cut(s) | 368 |
| GluI | GCNGC | 1 cut(s) | 822 |
| HaeIII | GGCC | 3 cut(s) | 711, 747, 885 |
| HhaI | GCGC | 1 cut(s) | 369 |
| Hin1I | GRCGYC | 1 cut(s) | 897 |
| Hin1II | CATG | 5 cut(s) | 34, 278, 358, 761, 890 |
| Hin6I | GCGC | 1 cut(s) | 367 |
| HinP1I | GCGC | 1 cut(s) | 367 |
| HincII | GTYRAC | 1 cut(s) | 901 |
| HindII | GTYRAC | 1 cut(s) | 901 |
| HinfI | GANTC | 4 cut(s) | 38, 430, 501, 845 |
| HphI | GGTGA | 1 cut(s) | 163 |
| Hpy166II | GTNNAC | 1 cut(s) | 901 |
| Hpy188I | TCNGA | 4 cut(s) | 43, 73, 177, 581 |
| Hpy188III | TCNNGA | 3 cut(s) | 275, 424, 605 |
| Hpy8I | GTNNAC | 1 cut(s) | 901 |
| HpyAV | CCTTC | 4 cut(s) | 38, 224, 520, 801 |
| HpyCH4III | ACNGT | 2 cut(s) | 240, 301 |
| HpyCH4IV | ACGT | 6 cut(s) | 202, 259, 664, 682, 694, 897 |
| HpyCH4V | TGCA | 4 cut(s) | 535, 650, 772, 914 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 92 |
| HpyF3I | CTNAG | 6 cut(s) | 40, 176, 543, 606, 783, 942 |
| HpySE526I | ACGT | 6 cut(s) | 202, 259, 664, 682, 694, 897 |
| Hsp92I | GRCGYC | 1 cut(s) | 897 |
| Hsp92II | CATG | 5 cut(s) | 34, 278, 358, 761, 890 |
| HspAI | GCGC | 1 cut(s) | 367 |
| Ksp22I | TGATCA | 2 cut(s) | 420, 522 |
| Kzo9I | GATC | 5 cut(s) | 7, 190, 420, 522, 670 |
| LmnI | GCTCC | 1 cut(s) | 291 |
| LpnPI | CCDG | 8 cut(s) | 33, 303, 485, 618, 729, 788, 867, 906 |
| Lsp1109I | GCAGC | 1 cut(s) | 833 |
| LweI | GCATC | 2 cut(s) | 235, 943 |
| MaeI | CTAG | 2 cut(s) | 464, 750 |
| MaeII | ACGT | 6 cut(s) | 202, 259, 664, 682, 694, 897 |
| MalI | GATC | 5 cut(s) | 9, 192, 422, 524, 672 |
| MboI | GATC | 5 cut(s) | 7, 190, 420, 522, 670 |
| MboII | GAAGA | 4 cut(s) | 235, 422, 439, 887 |
| MfeI | CAATTG | 1 cut(s) | 909 |
| MhlI | GDGCHC | 1 cut(s) | 781 |
| MluCI | AATT | 8 cut(s) | 23, 385, 456, 600, 613, 826, 909, 961 |
| MlyI | GAGTC | 3 cut(s) | 32, 424, 854 |
| MmeI | TCCRAC | 4 cut(s) | 15, 35, 462, 640 |
| MseI | TTAA | 3 cut(s) | 167, 252, 947 |
| MslI | CAYNNNNRTG | 1 cut(s) | 359 |
| MspCI | CTTAAG | 1 cut(s) | 251 |
| MunI | CAATTG | 1 cut(s) | 909 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 92 |
| NdeII | GATC | 5 cut(s) | 7, 190, 420, 522, 670 |
| NlaIII | CATG | 5 cut(s) | 34, 278, 358, 761, 890 |
| NlaIV | GGNNCC | 1 cut(s) | 780 |
| NspI | RCATGY | 1 cut(s) | 34 |
| PagI | TCATGA | 1 cut(s) | 274 |
| PciI | ACATGT | 1 cut(s) | 30 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 700 |
| PfeI | GAWTC | 1 cut(s) | 501 |
| PkrI | GCNGC | 1 cut(s) | 823 |
| PleI | GAGTC | 3 cut(s) | 32, 424, 853 |
| PmaCI | CACGTG | 1 cut(s) | 683 |
| PmlI | CACGTG | 1 cut(s) | 683 |
| PpsI | GAGTC | 3 cut(s) | 32, 424, 853 |
| Ppu21I | YACGTR | 1 cut(s) | 683 |
| PscI | ACATGT | 1 cut(s) | 30 |
| PspCI | CACGTG | 1 cut(s) | 683 |
| PspN4I | GGNNCC | 1 cut(s) | 780 |
| PspPI | GGNCC | 2 cut(s) | 710, 746 |
| RsaI | GTAC | 3 cut(s) | 56, 212, 402 |
| RsaNI | GTAC | 3 cut(s) | 55, 211, 401 |
| RseI | CAYNNNNRTG | 1 cut(s) | 359 |
| SaqAI | TTAA | 3 cut(s) | 167, 252, 947 |
| SatI | GCNGC | 1 cut(s) | 822 |
| Sau3AI | GATC | 5 cut(s) | 7, 190, 420, 522, 670 |
| Sau96I | GGNCC | 2 cut(s) | 710, 746 |
| SchI | GAGTC | 3 cut(s) | 32, 424, 854 |
| SduI | GDGCHC | 1 cut(s) | 781 |
| SfaNI | GCATC | 2 cut(s) | 235, 943 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 359 |
| SmlI | CTYRAG | 2 cut(s) | 50, 251 |
| SmoI | CTYRAG | 2 cut(s) | 50, 251 |
| Sse9I | AATT | 8 cut(s) | 23, 385, 456, 600, 613, 826, 909, 961 |
| SsiI | CCGC | 1 cut(s) | 319 |
| SspMI | CTAG | 2 cut(s) | 464, 750 |
| TaaI | ACNGT | 2 cut(s) | 240, 301 |
| TaiI | ACGT | 6 cut(s) | 205, 262, 667, 685, 697, 900 |
| TasI | AATT | 8 cut(s) | 23, 385, 456, 600, 613, 826, 909, 961 |
| TfiI | GAWTC | 1 cut(s) | 501 |
| Tru1I | TTAA | 3 cut(s) | 167, 252, 947 |
| Tru9I | TTAA | 3 cut(s) | 167, 252, 947 |
| TscAI | CASTG | 2 cut(s) | 112, 311 |
| TseI | GCWGC | 1 cut(s) | 821 |
| TspDTI | ATGAA | 3 cut(s) | 150, 263, 327 |
| TspRI | CASTG | 2 cut(s) | 112, 311 |
| Vha464I | CTTAAG | 1 cut(s) | 251 |
| XapI | RAATTY | 4 cut(s) | 23, 385, 600, 961 |
| XceI | RCATGY | 1 cut(s) | 34 |
| XspI | CTAG | 2 cut(s) | 464, 750 |
| ZraI | GACGTC | 1 cut(s) | 898 |