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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 357 |
| AccB1I | GGYRCC | 1 cut(s) | 448 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 393 |
| AclWI | GGATC | 2 cut(s) | 55, 305 |
| AcsI | RAATTY | 1 cut(s) | 240 |
| AcuI | CTGAAG | 2 cut(s) | 75, 447 |
| AcvI | CACGTG | 1 cut(s) | 341 |
| AdeI | CACNNNGTG | 1 cut(s) | 341 |
| AfaI | GTAC | 1 cut(s) | 128 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 291, 393 |
| AgsI | TTSAA | 2 cut(s) | 154, 208 |
| AjiI | CACGTC | 1 cut(s) | 305 |
| AjnI | CCWGG | 1 cut(s) | 218 |
| AluBI | AGCT | 1 cut(s) | 160 |
| AluI | AGCT | 1 cut(s) | 160 |
| AlwI | GGATC | 2 cut(s) | 55, 305 |
| Ama87I | CYCGRG | 1 cut(s) | 245 |
| AoxI | GGCC | 3 cut(s) | 221, 379, 415 |
| ApoI | RAATTY | 1 cut(s) | 240 |
| AspLEI | GCGC | 3 cut(s) | 9, 399, 413 |
| AspS9I | GGNCC | 3 cut(s) | 222, 380, 416 |
| AvaI | CYCGRG | 1 cut(s) | 245 |
| BaeGI | GKGCMC | 1 cut(s) | 451 |
| BanI | GGYRCC | 1 cut(s) | 448 |
| BbrPI | CACGTG | 1 cut(s) | 341 |
| BbsI | GAAGAC | 1 cut(s) | 74 |
| BccI | CCATC | 1 cut(s) | 398 |
| BciT130I | CCWGG | 1 cut(s) | 220 |
| BclI | TGATCA | 1 cut(s) | 162 |
| BfaI | CTAG | 2 cut(s) | 104, 420 |
| BfoI | RGCGCY | 1 cut(s) | 414 |
| Bme1390I | CCNGG | 1 cut(s) | 220 |
| BmeT110I | CYCGRG | 1 cut(s) | 245 |
| BmgBI | CACGTC | 1 cut(s) | 305 |
| BmgT120I | GGNCC | 3 cut(s) | 222, 380, 416 |
| BmiI | GGNNCC | 2 cut(s) | 382, 450 |
| BmrFI | CCNGG | 1 cut(s) | 220 |
| BmrI | ACTGGG | 1 cut(s) | 237 |
| BmsI | GCATC | 1 cut(s) | 150 |
| BmuI | ACTGGG | 1 cut(s) | 237 |
| BpiI | GAAGAC | 1 cut(s) | 74 |
| BpmI | CTGGAG | 1 cut(s) | 143 |
| BsaAI | YACGTR | 2 cut(s) | 323, 341 |
| BsaJI | CCNNGG | 1 cut(s) | 246 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 291, 393 |
| Bse1I | ACTGG | 2 cut(s) | 112, 232 |
| BseBI | CCWGG | 1 cut(s) | 220 |
| BseDI | CCNNGG | 1 cut(s) | 246 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 291, 393 |
| BseMII | CTCAG | 1 cut(s) | 174 |
| BseNI | ACTGG | 2 cut(s) | 112, 232 |
| BseSI | GKGCMC | 1 cut(s) | 451 |
| BshFI | GGCC | 3 cut(s) | 223, 381, 417 |
| BshNI | GGYRCC | 1 cut(s) | 448 |
| BsiHKCI | CYCGRG | 1 cut(s) | 245 |
| BslFI | GGGAC | 2 cut(s) | 244, 363 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 291, 393 |
| BsmFI | GGGAC | 2 cut(s) | 244, 363 |
| BsnI | GGCC | 3 cut(s) | 223, 381, 417 |
| BsoBI | CYCGRG | 1 cut(s) | 245 |
| Bsp1286I | GDGCHC | 1 cut(s) | 451 |
| Bsp143I | GATC | 3 cut(s) | 60, 162, 310 |
| BspANI | GGCC | 3 cut(s) | 223, 381, 417 |
| BspCNI | CTCAG | 1 cut(s) | 175 |
| BspLI | GGNNCC | 2 cut(s) | 382, 450 |
| BspPI | GGATC | 2 cut(s) | 55, 305 |
| BspT107I | GGYRCC | 1 cut(s) | 448 |
| BsrI | ACTGG | 2 cut(s) | 112, 232 |
| BssECI | CCNNGG | 1 cut(s) | 246 |
| BssMI | GATC | 3 cut(s) | 60, 162, 310 |
| Bst2UI | CCWGG | 1 cut(s) | 220 |
| BstBAI | YACGTR | 2 cut(s) | 323, 341 |
| BstC8I | GCNNGC | 1 cut(s) | 415 |
| BstDEI | CTNAG | 2 cut(s) | 183, 453 |
| BstH2I | RGCGCY | 1 cut(s) | 414 |
| BstHHI | GCGC | 3 cut(s) | 9, 399, 413 |
| BstKTI | GATC | 3 cut(s) | 63, 165, 313 |
| BstMBI | GATC | 3 cut(s) | 60, 162, 310 |
| BstNI | CCWGG | 1 cut(s) | 220 |
| BstSCI | CCNGG | 1 cut(s) | 218 |
| BstSLI | GKGCMC | 1 cut(s) | 451 |
| BstV2I | GAAGAC | 1 cut(s) | 74 |
| BsuRI | GGCC | 3 cut(s) | 223, 381, 417 |
| BtrI | CACGTC | 1 cut(s) | 305 |
| BtsIMutI | CAGTG | 1 cut(s) | 225 |
| Cac8I | GCNNGC | 1 cut(s) | 415 |
| CfoI | GCGC | 3 cut(s) | 9, 399, 413 |
| Cfr13I | GGNCC | 3 cut(s) | 222, 380, 416 |
| Csp6I | GTAC | 1 cut(s) | 127 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 388, 423 |
| CviAII | CATG | 2 cut(s) | 332, 428 |
| CviJI | RGCY | 7 cut(s) | 121, 160, 182, 223, 251, 381, 417 |
| CviKI_1 | RGCY | 7 cut(s) | 121, 160, 182, 223, 251, 381, 417 |
| CviQI | GTAC | 1 cut(s) | 127 |
| DdeI | CTNAG | 2 cut(s) | 183, 453 |
| DpnI | GATC | 3 cut(s) | 62, 164, 312 |
| DpnII | GATC | 3 cut(s) | 60, 162, 310 |
| DraI | TTTAAA | 1 cut(s) | 24 |
| DraIII | CACNNNGTG | 1 cut(s) | 341 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 357 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 357 |
| Eco57I | CTGAAG | 2 cut(s) | 75, 447 |
| Eco72I | CACGTG | 1 cut(s) | 341 |
| Eco88I | CYCGRG | 1 cut(s) | 245 |
| EcoO109I | RGGNCCY | 1 cut(s) | 380 |
| EcoRII | CCWGG | 1 cut(s) | 218 |
| FaeI | CATG | 2 cut(s) | 335, 431 |
| FaqI | GGGAC | 2 cut(s) | 244, 363 |
| FatI | CATG | 2 cut(s) | 331, 427 |
| FbaI | TGATCA | 1 cut(s) | 162 |
| FspBI | CTAG | 2 cut(s) | 104, 420 |
| GlaI | GCGC | 3 cut(s) | 8, 398, 412 |
| GsuI | CTGGAG | 1 cut(s) | 143 |
| HaeII | RGCGCY | 1 cut(s) | 414 |
| HaeIII | GGCC | 3 cut(s) | 223, 381, 417 |
| HhaI | GCGC | 3 cut(s) | 9, 399, 413 |
| Hin1II | CATG | 2 cut(s) | 335, 431 |
| Hin6I | GCGC | 3 cut(s) | 7, 397, 411 |
| HinP1I | GCGC | 3 cut(s) | 7, 397, 411 |
| HinfI | GANTC | 2 cut(s) | 70, 457 |
| Hpy166II | GTNNAC | 1 cut(s) | 275 |
| Hpy188III | TCNNGA | 2 cut(s) | 64, 245 |
| Hpy8I | GTNNAC | 1 cut(s) | 275 |
| HpyAV | CCTTC | 2 cut(s) | 160, 471 |
| HpyCH4IV | ACGT | 4 cut(s) | 19, 304, 322, 340 |
| HpyCH4V | TGCA | 4 cut(s) | 175, 290, 335, 442 |
| HpyF3I | CTNAG | 2 cut(s) | 183, 453 |
| HpySE526I | ACGT | 4 cut(s) | 19, 304, 322, 340 |
| Hsp92II | CATG | 2 cut(s) | 335, 431 |
| HspAI | GCGC | 3 cut(s) | 7, 397, 411 |
| Ksp22I | TGATCA | 1 cut(s) | 162 |
| Kzo9I | GATC | 3 cut(s) | 60, 162, 310 |
| LpnPI | CCDG | 7 cut(s) | 77, 107, 125, 205, 213, 232, 399 |
| LweI | GCATC | 1 cut(s) | 150 |
| MaeI | CTAG | 2 cut(s) | 104, 420 |
| MaeII | ACGT | 4 cut(s) | 19, 304, 322, 340 |
| MalI | GATC | 3 cut(s) | 62, 164, 312 |
| MboI | GATC | 3 cut(s) | 60, 162, 310 |
| MboII | GAAGA | 2 cut(s) | 62, 79 |
| MhlI | GDGCHC | 1 cut(s) | 451 |
| MluCI | AATT | 3 cut(s) | 96, 240, 253 |
| MlyI | GAGTC | 1 cut(s) | 64 |
| MnlI | CCTC | 4 cut(s) | 180, 190, 241, 371 |
| MseI | TTAA | 1 cut(s) | 23 |
| MspR9I | CCNGG | 1 cut(s) | 220 |
| MssI | GTTTAAAC | 1 cut(s) | 24 |
| MvaI | CCWGG | 1 cut(s) | 220 |
| NdeII | GATC | 3 cut(s) | 60, 162, 310 |
| NlaIII | CATG | 2 cut(s) | 335, 431 |
| NlaIV | GGNNCC | 2 cut(s) | 382, 450 |
| PfeI | GAWTC | 1 cut(s) | 457 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 393 |
| PleI | GAGTC | 1 cut(s) | 64 |
| PmaCI | CACGTG | 1 cut(s) | 341 |
| PmeI | GTTTAAAC | 1 cut(s) | 24 |
| PmlI | CACGTG | 1 cut(s) | 341 |
| PpsI | GAGTC | 1 cut(s) | 64 |
| Ppu21I | YACGTR | 2 cut(s) | 323, 341 |
| Psp6I | CCWGG | 1 cut(s) | 218 |
| PspCI | CACGTG | 1 cut(s) | 341 |
| PspGI | CCWGG | 1 cut(s) | 218 |
| PspN4I | GGNNCC | 2 cut(s) | 382, 450 |
| PspPI | GGNCC | 3 cut(s) | 222, 380, 416 |
| RsaI | GTAC | 1 cut(s) | 128 |
| RsaNI | GTAC | 1 cut(s) | 127 |
| SaqAI | TTAA | 1 cut(s) | 23 |
| Sau3AI | GATC | 3 cut(s) | 60, 162, 310 |
| Sau96I | GGNCC | 3 cut(s) | 222, 380, 416 |
| SchI | GAGTC | 1 cut(s) | 64 |
| ScrFI | CCNGG | 1 cut(s) | 220 |
| SduI | GDGCHC | 1 cut(s) | 451 |
| SfaNI | GCATC | 1 cut(s) | 150 |
| Sse9I | AATT | 3 cut(s) | 96, 240, 253 |
| SspMI | CTAG | 2 cut(s) | 104, 420 |
| StyD4I | CCNGG | 1 cut(s) | 218 |
| TaiI | ACGT | 4 cut(s) | 22, 307, 325, 343 |
| TasI | AATT | 3 cut(s) | 96, 240, 253 |
| TfiI | GAWTC | 1 cut(s) | 457 |
| Tru1I | TTAA | 1 cut(s) | 23 |
| Tru9I | TTAA | 1 cut(s) | 23 |
| TscAI | CASTG | 1 cut(s) | 232 |
| TspDTI | ATGAA | 1 cut(s) | 281 |
| TspRI | CASTG | 1 cut(s) | 232 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 393 |
| XapI | RAATTY | 1 cut(s) | 240 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 338 |
| XspI | CTAG | 2 cut(s) | 104, 420 |