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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 3 cut(s) | 305, 320, 454 |
| Acc16I | TGCGCA | 1 cut(s) | 301 |
| Acc36I | ACCTGC | 3 cut(s) | 305, 320, 454 |
| AccI | GTMKAC | 1 cut(s) | 285 |
| AccII | CGCG | 2 cut(s) | 484, 498 |
| AccIII | TCCGGA | 1 cut(s) | 409 |
| AciI | CCGC | 1 cut(s) | 757 |
| AclWI | GGATC | 6 cut(s) | 14, 299, 407, 420, 623, 853 |
| AcoI | YGGCCR | 2 cut(s) | 349, 399 |
| AcsI | RAATTY | 2 cut(s) | 823, 1038 |
| AcuI | CTGAAG | 1 cut(s) | 65 |
| AfaI | GTAC | 4 cut(s) | 94, 113, 227, 554 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 422, 562, 744 |
| AflII | CTTAAG | 1 cut(s) | 689 |
| AflIII | ACRYGT | 1 cut(s) | 798 |
| AgeI | ACCGGT | 1 cut(s) | 374 |
| AgsI | TTSAA | 4 cut(s) | 661, 743, 952, 1006 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1106 |
| AjiI | CACGTC | 1 cut(s) | 1103 |
| AjnI | CCWGG | 2 cut(s) | 176, 1016 |
| AleI | CACNNNNGTG | 1 cut(s) | 191 |
| AluBI | AGCT | 4 cut(s) | 119, 164, 278, 958 |
| AluI | AGCT | 4 cut(s) | 119, 164, 278, 958 |
| Alw21I | GWGCWC | 2 cut(s) | 176, 341 |
| Alw26I | GTCTC | 1 cut(s) | 383 |
| AlwI | GGATC | 6 cut(s) | 14, 299, 407, 420, 623, 853 |
| Ama87I | CYCGRG | 2 cut(s) | 279, 1043 |
| Aor13HI | TCCGGA | 1 cut(s) | 409 |
| AoxI | GGCC | 7 cut(s) | 167, 179, 260, 349, 362, 399, 1019 |
| ApeKI | GCWGC | 2 cut(s) | 275, 315 |
| ApoI | RAATTY | 2 cut(s) | 823, 1038 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 128, 160 |
| AsiGI | ACCGGT | 1 cut(s) | 374 |
| AspLEI | GCGC | 4 cut(s) | 104, 212, 302, 320 |
| AspS9I | GGNCC | 1 cut(s) | 362 |
| AsuHPI | GGTGA | 2 cut(s) | 359, 364 |
| AvaI | CYCGRG | 2 cut(s) | 279, 1043 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 536, 569 |
| BamHI | GGATCC | 1 cut(s) | 412 |
| BbsI | GAAGAC | 2 cut(s) | 668, 872 |
| Bbv12I | GWGCWC | 2 cut(s) | 176, 341 |
| BbvI | GCAGC | 2 cut(s) | 287, 327 |
| BccI | CCATC | 2 cut(s) | 620, 635 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 14, 48 |
| BciT130I | CCWGG | 2 cut(s) | 178, 1018 |
| BclI | TGATCA | 1 cut(s) | 960 |
| BcoDI | GTCTC | 1 cut(s) | 383 |
| BfaI | CTAG | 6 cut(s) | 68, 165, 198, 264, 393, 902 |
| BfmI | CTRYAG | 1 cut(s) | 313 |
| BfrI | CTTAAG | 1 cut(s) | 689 |
| BfuAI | ACCTGC | 3 cut(s) | 305, 320, 454 |
| BisI | GCNGC | 2 cut(s) | 276, 316 |
| BlsI | GCNGC | 2 cut(s) | 277, 317 |
| Bme1390I | CCNGG | 2 cut(s) | 178, 1018 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1106 |
| BmeT110I | CYCGRG | 2 cut(s) | 279, 1043 |
| BmgBI | CACGTC | 1 cut(s) | 1103 |
| BmgT120I | GGNCC | 1 cut(s) | 362 |
| BmiI | GGNNCC | 1 cut(s) | 414 |
| BmrFI | CCNGG | 2 cut(s) | 178, 1018 |
| BmrI | ACTGGG | 1 cut(s) | 217 |
| BmsI | GCATC | 4 cut(s) | 22, 276, 340, 673 |
| BmuI | ACTGGG | 1 cut(s) | 217 |
| BpiI | GAAGAC | 2 cut(s) | 668, 872 |
| BpuEI | CTTGAG | 2 cut(s) | 109, 569 |
| BsaI | GGTCTC | 1 cut(s) | 383 |
| BsaJI | CCNNGG | 2 cut(s) | 358, 1044 |
| BsaWI | WCCGGW | 3 cut(s) | 232, 374, 409 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 422, 562, 744 |
| Bse118I | RCCGGY | 2 cut(s) | 347, 374 |
| Bse1I | ACTGG | 2 cut(s) | 223, 910 |
| BseAI | TCCGGA | 1 cut(s) | 409 |
| BseBI | CCWGG | 2 cut(s) | 178, 1018 |
| BseDI | CCNNGG | 2 cut(s) | 358, 1044 |
| BseGI | GGATG | 7 cut(s) | 37, 55, 267, 331, 650, 688, 701 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 422, 562, 744 |
| BseMII | CTCAG | 1 cut(s) | 972 |
| BseNI | ACTGG | 2 cut(s) | 223, 910 |
| BseXI | GCAGC | 2 cut(s) | 287, 327 |
| Bsh1236I | CGCG | 2 cut(s) | 484, 498 |
| BshFI | GGCC | 7 cut(s) | 169, 181, 262, 351, 364, 401, 1021 |
| BshTI | ACCGGT | 1 cut(s) | 374 |
| BsiHKAI | GWGCWC | 2 cut(s) | 176, 341 |
| BsiHKCI | CYCGRG | 2 cut(s) | 279, 1043 |
| BsiSI | CCGG | 5 cut(s) | 233, 348, 375, 410, 423 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 422, 562, 744 |
| BsmAI | GTCTC | 1 cut(s) | 383 |
| BsnI | GGCC | 7 cut(s) | 169, 181, 262, 351, 364, 401, 1021 |
| Bso31I | GGTCTC | 1 cut(s) | 383 |
| BsoBI | CYCGRG | 2 cut(s) | 279, 1043 |
| Bsp1286I | GDGCHC | 2 cut(s) | 176, 341 |
| Bsp13I | TCCGGA | 1 cut(s) | 409 |
| Bsp143I | GATC | 9 cut(s) | 3, 19, 131, 304, 395, 412, 628, 858, 960 |
| Bsp19I | CCATGG | 1 cut(s) | 358 |
| Bsp68I | TCGCGA | 1 cut(s) | 484 |
| BspACI | CCGC | 1 cut(s) | 757 |
| BspANI | GGCC | 7 cut(s) | 169, 181, 262, 351, 364, 401, 1021 |
| BspCNI | CTCAG | 1 cut(s) | 973 |
| BspEI | TCCGGA | 1 cut(s) | 409 |
| BspFNI | CGCG | 2 cut(s) | 484, 498 |
| BspLI | GGNNCC | 1 cut(s) | 414 |
| BspMAI | CTGCAG | 1 cut(s) | 317 |
| BspMI | ACCTGC | 3 cut(s) | 305, 320, 454 |
| BspPI | GGATC | 6 cut(s) | 14, 299, 407, 420, 623, 853 |
| BspQI | GCTCTTC | 1 cut(s) | 42 |
| BspTI | CTTAAG | 1 cut(s) | 689 |
| BspTNI | GGTCTC | 1 cut(s) | 383 |
| BsrFI | RCCGGY | 2 cut(s) | 347, 374 |
| BsrI | ACTGG | 2 cut(s) | 223, 910 |
| BssAI | RCCGGY | 2 cut(s) | 347, 374 |
| BssECI | CCNNGG | 2 cut(s) | 358, 1044 |
| BssMI | GATC | 9 cut(s) | 3, 19, 131, 304, 395, 412, 628, 858, 960 |
| BssT1I | CCWWGG | 1 cut(s) | 358 |
| Bst2UI | CCWGG | 2 cut(s) | 178, 1018 |
| Bst4CI | ACNGT | 4 cut(s) | 193, 560, 678, 739 |
| Bst6I | CTCTTC | 2 cut(s) | 42, 501 |
| BstAFI | CTTAAG | 1 cut(s) | 689 |
| BstC8I | GCNNGC | 1 cut(s) | 761 |
| BstDEI | CTNAG | 3 cut(s) | 11, 115, 981 |
| BstDSI | CCRYGG | 1 cut(s) | 358 |
| BstF5I | GGATG | 7 cut(s) | 37, 55, 267, 331, 650, 688, 701 |
| BstFNI | CGCG | 2 cut(s) | 484, 498 |
| BstHHI | GCGC | 4 cut(s) | 104, 212, 302, 320 |
| BstKTI | GATC | 9 cut(s) | 6, 22, 134, 307, 398, 415, 631, 861, 963 |
| BstMAI | GTCTC | 1 cut(s) | 383 |
| BstMBI | GATC | 9 cut(s) | 3, 19, 131, 304, 395, 412, 628, 858, 960 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 207 |
| BstNI | CCWGG | 2 cut(s) | 178, 1018 |
| BstNSI | RCATGY | 1 cut(s) | 802 |
| BstSCI | CCNGG | 2 cut(s) | 176, 1016 |
| BstSFI | CTRYAG | 1 cut(s) | 313 |
| BstUI | CGCG | 2 cut(s) | 484, 498 |
| BstV1I | GCAGC | 2 cut(s) | 287, 327 |
| BstV2I | GAAGAC | 2 cut(s) | 668, 872 |
| BstX2I | RGATCY | 2 cut(s) | 304, 412 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 359 |
| BstYI | RGATCY | 2 cut(s) | 304, 412 |
| BsuRI | GGCC | 7 cut(s) | 169, 181, 262, 351, 364, 401, 1021 |
| BtgI | CCRYGG | 1 cut(s) | 358 |
| BtrI | CACGTC | 1 cut(s) | 1103 |
| BtsCI | GGATG | 7 cut(s) | 37, 55, 267, 331, 650, 688, 701 |
| BtsI | GCAGTG | 2 cut(s) | 156, 603 |
| BtsIMutI | CAGTG | 3 cut(s) | 156, 198, 603 |
| BtuMI | TCGCGA | 1 cut(s) | 484 |
| BveI | ACCTGC | 3 cut(s) | 305, 320, 454 |
| Cac8I | GCNNGC | 1 cut(s) | 761 |
| CfoI | GCGC | 4 cut(s) | 104, 212, 302, 320 |
| Cfr10I | RCCGGY | 2 cut(s) | 347, 374 |
| Cfr13I | GGNCC | 1 cut(s) | 362 |
| Csp6I | GTAC | 4 cut(s) | 93, 112, 226, 553 |
| CspAI | ACCGGT | 1 cut(s) | 374 |
| CviAII | CATG | 3 cut(s) | 291, 359, 799 |
| CviQI | GTAC | 4 cut(s) | 93, 112, 226, 553 |
| DdeI | CTNAG | 3 cut(s) | 11, 115, 981 |
| DpnI | GATC | 9 cut(s) | 5, 21, 133, 306, 397, 414, 630, 860, 962 |
| DpnII | GATC | 9 cut(s) | 3, 19, 131, 304, 395, 412, 628, 858, 960 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1106 |
| EaeI | YGGCCR | 2 cut(s) | 349, 399 |
| Eam1104I | CTCTTC | 2 cut(s) | 42, 501 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1106 |
| EarI | CTCTTC | 2 cut(s) | 42, 501 |
| Eco130I | CCWWGG | 1 cut(s) | 358 |
| Eco147I | AGGCCT | 2 cut(s) | 262, 1021 |
| Eco31I | GGTCTC | 1 cut(s) | 383 |
| Eco57I | CTGAAG | 1 cut(s) | 65 |
| Eco88I | CYCGRG | 2 cut(s) | 279, 1043 |
| EcoRII | CCWGG | 2 cut(s) | 176, 1016 |
| EcoT14I | CCWWGG | 1 cut(s) | 358 |
| ErhI | CCWWGG | 1 cut(s) | 358 |
| FaeI | CATG | 3 cut(s) | 294, 362, 802 |
| FatI | CATG | 3 cut(s) | 290, 358, 798 |
| FbaI | TGATCA | 1 cut(s) | 960 |
| FblI | GTMKAC | 1 cut(s) | 285 |
| Fnu4HI | GCNGC | 2 cut(s) | 276, 316 |
| FokI | GGATG | 7 cut(s) | 44, 62, 254, 318, 657, 695, 708 |
| Fsp4HI | GCNGC | 2 cut(s) | 276, 316 |
| FspBI | CTAG | 6 cut(s) | 68, 165, 198, 264, 393, 902 |
| FspI | TGCGCA | 1 cut(s) | 301 |
| GlaI | GCGC | 4 cut(s) | 103, 211, 301, 319 |
| GluI | GCNGC | 2 cut(s) | 276, 316 |
| HaeIII | GGCC | 7 cut(s) | 169, 181, 262, 351, 364, 401, 1021 |
| HapII | CCGG | 5 cut(s) | 233, 348, 375, 410, 423 |
| HhaI | GCGC | 4 cut(s) | 104, 212, 302, 320 |
| Hin1II | CATG | 3 cut(s) | 294, 362, 802 |
| Hin6I | GCGC | 4 cut(s) | 102, 210, 300, 318 |
| HinP1I | GCGC | 4 cut(s) | 102, 210, 300, 318 |
| HinfI | GANTC | 4 cut(s) | 236, 282, 324, 868 |
| HpaII | CCGG | 5 cut(s) | 233, 348, 375, 410, 423 |
| HphI | GGTGA | 2 cut(s) | 359, 364 |
| Hpy166II | GTNNAC | 2 cut(s) | 154, 286 |
| Hpy188I | TCNGA | 7 cut(s) | 45, 136, 336, 571, 628, 652, 682 |
| Hpy188III | TCNNGA | 7 cut(s) | 17, 23, 393, 410, 483, 862, 1043 |
| Hpy8I | GTNNAC | 2 cut(s) | 154, 286 |
| HpyAV | CCTTC | 4 cut(s) | 40, 429, 444, 536 |
| HpyCH4III | ACNGT | 4 cut(s) | 193, 560, 678, 739 |
| HpyCH4IV | ACGT | 1 cut(s) | 1102 |
| HpyCH4V | TGCA | 9 cut(s) | 126, 149, 275, 294, 315, 331, 789, 973, 1088 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 207 |
| HpyF3I | CTNAG | 3 cut(s) | 11, 115, 981 |
| HpySE526I | ACGT | 1 cut(s) | 1102 |
| Hsp92II | CATG | 3 cut(s) | 294, 362, 802 |
| HspAI | GCGC | 4 cut(s) | 102, 210, 300, 318 |
| Kpn2I | TCCGGA | 1 cut(s) | 409 |
| Ksp22I | TGATCA | 1 cut(s) | 960 |
| Kzo9I | GATC | 9 cut(s) | 3, 19, 131, 304, 395, 412, 628, 858, 960 |
| LguI | GCTCTTC | 1 cut(s) | 42 |
| Lsp1109I | GCAGC | 2 cut(s) | 287, 327 |
| LweI | GCATC | 4 cut(s) | 22, 276, 340, 673 |
| MaeI | CTAG | 6 cut(s) | 68, 165, 198, 264, 393, 902 |
| MaeII | ACGT | 1 cut(s) | 1102 |
| MaeIII | GTNAC | 1 cut(s) | 250 |
| MalI | GATC | 9 cut(s) | 5, 21, 133, 306, 397, 414, 630, 860, 962 |
| MboI | GATC | 9 cut(s) | 3, 19, 131, 304, 395, 412, 628, 858, 960 |
| MflI | RGATCY | 2 cut(s) | 304, 412 |
| MhlI | GDGCHC | 2 cut(s) | 176, 341 |
| MluCI | AATT | 5 cut(s) | 823, 894, 939, 1038, 1051 |
| MlyI | GAGTC | 3 cut(s) | 291, 318, 862 |
| MmeI | TCCRAC | 3 cut(s) | 660, 900, 1078 |
| MroI | TCCGGA | 1 cut(s) | 409 |
| MseI | TTAA | 1 cut(s) | 690 |
| MslI | CAYNNNNRTG | 1 cut(s) | 191 |
| MspCI | CTTAAG | 1 cut(s) | 689 |
| MspI | CCGG | 5 cut(s) | 233, 348, 375, 410, 423 |
| MspR9I | CCNGG | 2 cut(s) | 178, 1018 |
| MvaI | CCWGG | 2 cut(s) | 178, 1018 |
| MvnI | CGCG | 2 cut(s) | 484, 498 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 207 |
| NcoI | CCATGG | 1 cut(s) | 358 |
| NdeII | GATC | 9 cut(s) | 3, 19, 131, 304, 395, 412, 628, 858, 960 |
| NlaIII | CATG | 3 cut(s) | 294, 362, 802 |
| NlaIV | GGNNCC | 1 cut(s) | 414 |
| NmeAIII | GCCGAG | 1 cut(s) | 195 |
| NruI | TCGCGA | 1 cut(s) | 484 |
| NsbI | TGCGCA | 1 cut(s) | 301 |
| NspI | RCATGY | 1 cut(s) | 802 |
| OliI | CACNNNNGTG | 1 cut(s) | 191 |
| PaeR7I | CTCGAG | 1 cut(s) | 279 |
| PaqCI | CACCTGC | 3 cut(s) | 305, 320, 454 |
| PceI | AGGCCT | 2 cut(s) | 262, 1021 |
| PciI | ACATGT | 1 cut(s) | 798 |
| PciSI | GCTCTTC | 1 cut(s) | 42 |
| PfeI | GAWTC | 1 cut(s) | 236 |
| PinAI | ACCGGT | 1 cut(s) | 374 |
| PkrI | GCNGC | 2 cut(s) | 277, 317 |
| PleI | GAGTC | 3 cut(s) | 290, 318, 862 |
| PpsI | GAGTC | 3 cut(s) | 290, 318, 862 |
| PscI | ACATGT | 1 cut(s) | 798 |
| Psp6I | CCWGG | 2 cut(s) | 176, 1016 |
| PspGI | CCWGG | 2 cut(s) | 176, 1016 |
| PspN4I | GGNNCC | 1 cut(s) | 414 |
| PspPI | GGNCC | 1 cut(s) | 362 |
| PspXI | VCTCGAGB | 1 cut(s) | 279 |
| PstI | CTGCAG | 1 cut(s) | 317 |
| PsuI | RGATCY | 2 cut(s) | 304, 412 |
| RruI | TCGCGA | 1 cut(s) | 484 |
| RsaI | GTAC | 4 cut(s) | 94, 113, 227, 554 |
| RsaNI | GTAC | 4 cut(s) | 93, 112, 226, 553 |
| RseI | CAYNNNNRTG | 1 cut(s) | 191 |
| SapI | GCTCTTC | 1 cut(s) | 42 |
| SaqAI | TTAA | 1 cut(s) | 690 |
| SatI | GCNGC | 2 cut(s) | 276, 316 |
| Sau3AI | GATC | 9 cut(s) | 3, 19, 131, 304, 395, 412, 628, 858, 960 |
| Sau96I | GGNCC | 1 cut(s) | 362 |
| SchI | GAGTC | 3 cut(s) | 291, 318, 862 |
| ScrFI | CCNGG | 2 cut(s) | 178, 1018 |
| SduI | GDGCHC | 2 cut(s) | 176, 341 |
| SfaNI | GCATC | 4 cut(s) | 22, 276, 340, 673 |
| SfcI | CTRYAG | 1 cut(s) | 313 |
| Sfr274I | CTCGAG | 1 cut(s) | 279 |
| SlaI | CTCGAG | 1 cut(s) | 279 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 191 |
| SmlI | CTYRAG | 4 cut(s) | 88, 279, 548, 689 |
| SmoI | CTYRAG | 4 cut(s) | 88, 279, 548, 689 |
| Sse9I | AATT | 5 cut(s) | 823, 894, 939, 1038, 1051 |
| SseBI | AGGCCT | 2 cut(s) | 262, 1021 |
| SsiI | CCGC | 1 cut(s) | 757 |
| SspMI | CTAG | 6 cut(s) | 68, 165, 198, 264, 393, 902 |
| StuI | AGGCCT | 2 cut(s) | 262, 1021 |
| StyD4I | CCNGG | 2 cut(s) | 176, 1016 |
| StyI | CCWWGG | 1 cut(s) | 358 |
| TaaI | ACNGT | 4 cut(s) | 193, 560, 678, 739 |
| TaiI | ACGT | 1 cut(s) | 1105 |
| TaqI | TCGA | 1 cut(s) | 280 |
| TasI | AATT | 5 cut(s) | 823, 894, 939, 1038, 1051 |
| TatI | WGTACW | 3 cut(s) | 92, 111, 225 |
| TfiI | GAWTC | 1 cut(s) | 236 |
| Tru1I | TTAA | 1 cut(s) | 690 |
| Tru9I | TTAA | 1 cut(s) | 690 |
| TscAI | CASTG | 3 cut(s) | 156, 198, 610 |
| TseI | GCWGC | 2 cut(s) | 275, 315 |
| TspDTI | ATGAA | 3 cut(s) | 72, 701, 765 |
| TspRI | CASTG | 3 cut(s) | 156, 198, 610 |
| Vha464I | CTTAAG | 1 cut(s) | 689 |
| XapI | RAATTY | 2 cut(s) | 823, 1038 |
| XbaI | TCTAGA | 1 cut(s) | 392 |
| XceI | RCATGY | 1 cut(s) | 802 |
| XhoI | CTCGAG | 1 cut(s) | 279 |
| XmiI | GTMKAC | 1 cut(s) | 285 |
| XspI | CTAG | 6 cut(s) | 68, 165, 198, 264, 393, 902 |