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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 557 |
| AciI | CCGC | 1 cut(s) | 31 |
| AclWI | GGATC | 3 cut(s) | 337, 452, 635 |
| AcoI | YGGCCR | 2 cut(s) | 28, 171 |
| AcsI | RAATTY | 2 cut(s) | 196, 473 |
| AcuI | CTGAAG | 1 cut(s) | 650 |
| AfaI | GTAC | 3 cut(s) | 506, 588, 662 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 105, 514, 655 |
| AgeI | ACCGGT | 1 cut(s) | 182 |
| AgsI | TTSAA | 4 cut(s) | 8, 151, 201, 673 |
| AjnI | CCWGG | 1 cut(s) | 345 |
| AluBI | AGCT | 4 cut(s) | 280, 402, 410, 601 |
| AluI | AGCT | 4 cut(s) | 280, 402, 410, 601 |
| Alw21I | GWGCWC | 1 cut(s) | 288 |
| Alw44I | GTGCAC | 1 cut(s) | 284 |
| AlwI | GGATC | 3 cut(s) | 337, 452, 635 |
| Ama87I | CYCGRG | 1 cut(s) | 377 |
| AoxI | GGCC | 4 cut(s) | 28, 171, 423, 432 |
| ApaLI | GTGCAC | 1 cut(s) | 284 |
| ApeKI | GCWGC | 1 cut(s) | 245 |
| ApoI | RAATTY | 2 cut(s) | 196, 473 |
| AsiGI | ACCGGT | 1 cut(s) | 182 |
| AspS9I | GGNCC | 2 cut(s) | 424, 433 |
| AsuHPI | GGTGA | 3 cut(s) | 172, 345, 553 |
| AvaI | CYCGRG | 1 cut(s) | 377 |
| BaeGI | GKGCMC | 1 cut(s) | 288 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 488, 521 |
| BanII | GRGCYC | 1 cut(s) | 258 |
| BauI | CACGAG | 1 cut(s) | 281 |
| BbsI | GAAGAC | 1 cut(s) | 680 |
| Bbv12I | GWGCWC | 1 cut(s) | 288 |
| BbvI | GCAGC | 1 cut(s) | 232 |
| BccI | CCATC | 3 cut(s) | 376, 445, 598 |
| BceAI | ACGGC | 2 cut(s) | 186, 375 |
| BciT130I | CCWGG | 1 cut(s) | 347 |
| BfaI | CTAG | 2 cut(s) | 407, 645 |
| BfmI | CTRYAG | 1 cut(s) | 249 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 431 |
| BisI | GCNGC | 2 cut(s) | 31, 246 |
| BlsI | GCNGC | 2 cut(s) | 32, 247 |
| Bme1390I | CCNGG | 1 cut(s) | 347 |
| BmeT110I | CYCGRG | 1 cut(s) | 377 |
| BmgT120I | GGNCC | 2 cut(s) | 424, 433 |
| BmrFI | CCNGG | 1 cut(s) | 347 |
| BmsI | GCATC | 1 cut(s) | 307 |
| BpiI | GAAGAC | 1 cut(s) | 680 |
| BpuEI | CTTGAG | 1 cut(s) | 521 |
| BsaWI | WCCGGW | 1 cut(s) | 182 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 105, 514, 655 |
| Bse118I | RCCGGY | 1 cut(s) | 182 |
| Bse1I | ACTGG | 1 cut(s) | 222 |
| Bse3DI | GCAATG | 1 cut(s) | 326 |
| BseBI | CCWGG | 1 cut(s) | 347 |
| BseGI | GGATG | 3 cut(s) | 49, 298, 460 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 105, 514, 655 |
| BseMI | GCAATG | 1 cut(s) | 326 |
| BseMII | CTCAG | 3 cut(s) | 45, 456, 504 |
| BseNI | ACTGG | 1 cut(s) | 222 |
| BseSI | GKGCMC | 1 cut(s) | 288 |
| BseXI | GCAGC | 1 cut(s) | 232 |
| BseYI | CCCAGC | 2 cut(s) | 398, 654 |
| BshFI | GGCC | 4 cut(s) | 30, 173, 425, 434 |
| BshTI | ACCGGT | 1 cut(s) | 182 |
| BsiHKAI | GWGCWC | 1 cut(s) | 288 |
| BsiHKCI | CYCGRG | 1 cut(s) | 377 |
| BsiSI | CCGG | 1 cut(s) | 183 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 105, 514, 655 |
| BsmI | GAATGC | 1 cut(s) | 240 |
| BsnI | GGCC | 4 cut(s) | 30, 173, 425, 434 |
| BsoBI | CYCGRG | 1 cut(s) | 377 |
| Bsp1286I | GDGCHC | 2 cut(s) | 258, 288 |
| Bsp143I | GATC | 3 cut(s) | 342, 457, 640 |
| BspACI | CCGC | 1 cut(s) | 31 |
| BspANI | GGCC | 4 cut(s) | 30, 173, 425, 434 |
| BspCNI | CTCAG | 3 cut(s) | 46, 455, 503 |
| BspPI | GGATC | 3 cut(s) | 337, 452, 635 |
| BsrDI | GCAATG | 1 cut(s) | 326 |
| BsrFI | RCCGGY | 1 cut(s) | 182 |
| BsrI | ACTGG | 1 cut(s) | 222 |
| BssAI | RCCGGY | 1 cut(s) | 182 |
| BssMI | GATC | 3 cut(s) | 342, 457, 640 |
| BssSI | CACGAG | 1 cut(s) | 281 |
| Bst2BI | CACGAG | 1 cut(s) | 281 |
| Bst2UI | CCWGG | 1 cut(s) | 347 |
| Bst4CI | ACNGT | 4 cut(s) | 360, 512, 559, 690 |
| BstDEI | CTNAG | 3 cut(s) | 54, 442, 490 |
| BstEII | GGTNACC | 1 cut(s) | 265 |
| BstF5I | GGATG | 3 cut(s) | 49, 298, 460 |
| BstKTI | GATC | 3 cut(s) | 345, 460, 643 |
| BstMBI | GATC | 3 cut(s) | 342, 457, 640 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 431, 542 |
| BstNI | CCWGG | 1 cut(s) | 347 |
| BstPI | GGTNACC | 1 cut(s) | 265 |
| BstSCI | CCNGG | 1 cut(s) | 345 |
| BstSFI | CTRYAG | 1 cut(s) | 249 |
| BstSLI | GKGCMC | 1 cut(s) | 288 |
| BstV1I | GCAGC | 1 cut(s) | 232 |
| BstV2I | GAAGAC | 1 cut(s) | 680 |
| BsuRI | GGCC | 4 cut(s) | 30, 173, 425, 434 |
| BtsCI | GGATG | 3 cut(s) | 49, 298, 460 |
| BtsIMutI | CAGTG | 3 cut(s) | 215, 356, 555 |
| Cfr10I | RCCGGY | 1 cut(s) | 182 |
| Cfr13I | GGNCC | 2 cut(s) | 424, 433 |
| Csp6I | GTAC | 3 cut(s) | 505, 587, 661 |
| CspAI | ACCGGT | 1 cut(s) | 182 |
| CviAII | CATG | 4 cut(s) | 72, 428, 437, 470 |
| CviQI | GTAC | 3 cut(s) | 505, 587, 661 |
| DdeI | CTNAG | 3 cut(s) | 54, 442, 490 |
| DpnI | GATC | 3 cut(s) | 344, 459, 642 |
| DpnII | GATC | 3 cut(s) | 342, 457, 640 |
| DraI | TTTAAA | 1 cut(s) | 136 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 557 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 557 |
| EaeI | YGGCCR | 2 cut(s) | 28, 171 |
| Eco24I | GRGCYC | 1 cut(s) | 258 |
| Eco57I | CTGAAG | 1 cut(s) | 650 |
| Eco88I | CYCGRG | 1 cut(s) | 377 |
| Eco91I | GGTNACC | 1 cut(s) | 265 |
| EcoO65I | GGTNACC | 1 cut(s) | 265 |
| EcoRII | CCWGG | 1 cut(s) | 345 |
| EcoT38I | GRGCYC | 1 cut(s) | 258 |
| FaeI | CATG | 4 cut(s) | 75, 431, 440, 473 |
| FatI | CATG | 4 cut(s) | 71, 427, 436, 469 |
| Fnu4HI | GCNGC | 2 cut(s) | 31, 246 |
| FokI | GGATG | 3 cut(s) | 56, 285, 467 |
| FriOI | GRGCYC | 1 cut(s) | 258 |
| Fsp4HI | GCNGC | 2 cut(s) | 31, 246 |
| FspBI | CTAG | 2 cut(s) | 407, 645 |
| GluI | GCNGC | 2 cut(s) | 31, 246 |
| GsaI | CCCAGC | 2 cut(s) | 402, 658 |
| HaeIII | GGCC | 4 cut(s) | 30, 173, 425, 434 |
| HapII | CCGG | 1 cut(s) | 183 |
| Hin1II | CATG | 4 cut(s) | 75, 431, 440, 473 |
| HinfI | GANTC | 4 cut(s) | 116, 350, 440, 488 |
| HpaII | CCGG | 1 cut(s) | 183 |
| HphI | GGTGA | 3 cut(s) | 172, 345, 553 |
| Hpy166II | GTNNAC | 2 cut(s) | 168, 286 |
| Hpy188I | TCNGA | 3 cut(s) | 342, 421, 493 |
| Hpy188III | TCNNGA | 3 cut(s) | 302, 377, 379 |
| Hpy8I | GTNNAC | 2 cut(s) | 168, 286 |
| HpyAV | CCTTC | 1 cut(s) | 674 |
| HpyCH4III | ACNGT | 4 cut(s) | 360, 512, 559, 690 |
| HpyCH4V | TGCA | 3 cut(s) | 238, 286, 298 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 431, 542 |
| HpyF3I | CTNAG | 3 cut(s) | 54, 442, 490 |
| Hsp92II | CATG | 4 cut(s) | 75, 431, 440, 473 |
| Kzo9I | GATC | 3 cut(s) | 342, 457, 640 |
| LpnPI | CCDG | 8 cut(s) | 66, 196, 203, 315, 332, 359, 412, 640 |
| Lsp1109I | GCAGC | 1 cut(s) | 232 |
| LweI | GCATC | 1 cut(s) | 307 |
| MaeI | CTAG | 2 cut(s) | 407, 645 |
| MaeIII | GTNAC | 3 cut(s) | 178, 265, 559 |
| MalI | GATC | 3 cut(s) | 344, 459, 642 |
| MboI | GATC | 3 cut(s) | 342, 457, 640 |
| MboII | GAAGA | 1 cut(s) | 685 |
| MfeI | CAATTG | 2 cut(s) | 289, 312 |
| MhlI | GDGCHC | 2 cut(s) | 258, 288 |
| MluCI | AATT | 4 cut(s) | 196, 289, 312, 473 |
| MlyI | GAGTC | 3 cut(s) | 125, 434, 482 |
| MmeI | TCCRAC | 2 cut(s) | 21, 485 |
| MnlI | CCTC | 5 cut(s) | 205, 256, 415, 424, 621 |
| MseI | TTAA | 3 cut(s) | 135, 321, 617 |
| MslI | CAYNNNNRTG | 1 cut(s) | 361 |
| MspI | CCGG | 1 cut(s) | 183 |
| MspR9I | CCNGG | 1 cut(s) | 347 |
| MunI | CAATTG | 2 cut(s) | 289, 312 |
| Mva1269I | GAATGC | 1 cut(s) | 240 |
| MvaI | CCWGG | 1 cut(s) | 347 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 431, 542 |
| NdeII | GATC | 3 cut(s) | 342, 457, 640 |
| NlaIII | CATG | 4 cut(s) | 75, 431, 440, 473 |
| NmuCI | GTSAC | 1 cut(s) | 559 |
| PaeR7I | CTCGAG | 1 cut(s) | 377 |
| PctI | GAATGC | 1 cut(s) | 240 |
| PfeI | GAWTC | 1 cut(s) | 350 |
| PfoI | TCCNGGA | 1 cut(s) | 345 |
| PinAI | ACCGGT | 1 cut(s) | 182 |
| PkrI | GCNGC | 2 cut(s) | 32, 247 |
| PleI | GAGTC | 3 cut(s) | 124, 434, 482 |
| PpsI | GAGTC | 3 cut(s) | 124, 434, 482 |
| Psp6I | CCWGG | 1 cut(s) | 345 |
| PspEI | GGTNACC | 1 cut(s) | 265 |
| PspFI | CCCAGC | 2 cut(s) | 398, 654 |
| PspGI | CCWGG | 1 cut(s) | 345 |
| PspPI | GGNCC | 2 cut(s) | 424, 433 |
| RsaI | GTAC | 3 cut(s) | 506, 588, 662 |
| RsaNI | GTAC | 3 cut(s) | 505, 587, 661 |
| RseI | CAYNNNNRTG | 1 cut(s) | 361 |
| SaqAI | TTAA | 3 cut(s) | 135, 321, 617 |
| SatI | GCNGC | 2 cut(s) | 31, 246 |
| Sau3AI | GATC | 3 cut(s) | 342, 457, 640 |
| Sau96I | GGNCC | 2 cut(s) | 424, 433 |
| SchI | GAGTC | 3 cut(s) | 125, 434, 482 |
| ScrFI | CCNGG | 1 cut(s) | 347 |
| SduI | GDGCHC | 2 cut(s) | 258, 288 |
| SetI | ASST | 9 cut(s) | 39, 244, 267, 272, 282, 404, 412, 603, 666 |
| SfaNI | GCATC | 1 cut(s) | 307 |
| SfcI | CTRYAG | 1 cut(s) | 249 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 431 |
| Sfr274I | CTCGAG | 1 cut(s) | 377 |
| SlaI | CTCGAG | 1 cut(s) | 377 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 361 |
| SmlI | CTYRAG | 2 cut(s) | 377, 500 |
| SmoI | CTYRAG | 2 cut(s) | 377, 500 |
| Sse9I | AATT | 4 cut(s) | 196, 289, 312, 473 |
| SsiI | CCGC | 1 cut(s) | 31 |
| SspMI | CTAG | 2 cut(s) | 407, 645 |
| StyD4I | CCNGG | 1 cut(s) | 345 |
| TaaI | ACNGT | 4 cut(s) | 360, 512, 559, 690 |
| TaqI | TCGA | 4 cut(s) | 206, 258, 378, 466 |
| TasI | AATT | 4 cut(s) | 196, 289, 312, 473 |
| TauI | GCSGC | 1 cut(s) | 33 |
| TfiI | GAWTC | 1 cut(s) | 350 |
| Tru1I | TTAA | 3 cut(s) | 135, 321, 617 |
| Tru9I | TTAA | 3 cut(s) | 135, 321, 617 |
| TscAI | CASTG | 3 cut(s) | 222, 363, 562 |
| TseFI | GTSAC | 1 cut(s) | 559 |
| TseI | GCWGC | 1 cut(s) | 245 |
| Tsp45I | GTSAC | 1 cut(s) | 559 |
| TspDTI | ATGAA | 3 cut(s) | 60, 60, 486 |
| TspRI | CASTG | 3 cut(s) | 222, 363, 562 |
| VneI | GTGCAC | 1 cut(s) | 284 |
| XapI | RAATTY | 2 cut(s) | 196, 473 |
| XhoI | CTCGAG | 1 cut(s) | 377 |
| XspI | CTAG | 2 cut(s) | 407, 645 |